Pablo's research and teaching areas Anaga mountains in Tenerife, Canary Islands

Publications (Google Scholar)

wordle.net

2021

78. Daniel Cazares*, Adrian Cazares, Wendy Figueroa, Gabriel Guarneros, Robert A. Edwards, Pablo Vinuesa* (2021). A novel group of promiscuous podophages infecting diverse Gammaproteobacteria from river communities exhibits dynamic inter genus host adaptation. mSystems 2021 Feb 2;6(1):e00773-20. DOI:10.1128/mSystems.00773-20, PMID: 33531404

2020

77. Alejandro Pereira-Santana, Samuel David Gamboa-Tuz, Tao Zhao, M. Eric Schranz, Pablo Vinuesa, Andrea Bayona, Luis C. Rodríguez-Zapata, and Enrique Castano (2020). Fibrillarin evolution through the Tree of life: Comparative genomics and microsynteny network analyses provide new insights into the evolutionary history of Fibrillarin. Plos Computational Biology. Oct 19;16(10):e1008318. doi: 10.1371/journal.pcbi.1008318. PMID: 33075080

76. Miranda-Sánchez, F. y Vinuesa, P. 2020. Diversidad de rizobios simbióticos en leguminosas de la Reserva de la Biosfera Sierra de Huautla. En: La biodiversidad en Morelos. Estudio de Estado 2. Vol. ii. conabio, México, pp. 402-407.

75. Marco Antonio Carballo-Ontiveros, Adrián Cazares, Pablo Vinuesa, Luis Kameyama, and Gabriel Guarneros (2020). The concerted action of two B3-like prophage genes exclude superinfecting bacteriophages by blocking DNA entry into Pseudomonas aeruginosa. Journal of Virology 94(15):e00953-20. doi: 10.1128/jvi.00953-20. Print 2020 Jul 16. PMID: 32461312

74. Guzmán-Trampe SM, Ikeda H, Vinuesa P, Macías-Rubalcava ML, Esquivel B, Centeno-Leija S, Tapia-Cabrera SM, Mora-Herrera SI, Ruiz-Villafán B, Rodríguez-Sanoja R, Sanchez S. (2020). Production of distinct labdane-type diterpenoids using a novel cryptic labdane-like cluster from Streptomyces thermocarboxydus K155. Appl Microbiol Biotechnol. 104(2):741-750. doi: 10.1007/s00253-019-10240-3. PubMed PMID: 31807886.

2019

73. Claudia Silva, Edmundo Calva, Marcos Fernández-Mora, José L. Puente, and Pablo Vinuesa (2019). Population analysis of D6-like plasmid prophage variants associated with specific IncC plasmid types in the emerging Salmonella Typhimurium ST213 genotype. PLoS ONE. 2019 Oct 18;14(10):e0223975.|doi: 10.1371/journal.pone.0223975. eCollection 2019|PMID: 31626639.

72. Edwards RA, Vega AA, Norman HM, Ohaeri M, Levi K, Dinsdale EA, Cinek O, Aziz RK, McNair K, Barr JJ, Bibby K, Brouns SJJ, Cazares A, de Jonge PA, Desnues C,Díaz Muñoz SL, Fineran PC, Kurilshikov A, Lavigne R, Mazankova K, McCarthy DT,Nobrega FL, Reyes Muñoz A, Tapia G, Trefault N, Tyakht AV, Vinuesa P, Wagemans J, Zhernakova A, Aarestrup FM, Ahmadov G, Alassaf A, Anton J, Asangba A, Billings EK, Cantu VA, Carlton JM, Cazares D, Cho GS, Condeff T, Cortés P, Cranfield M, Cuevas DA, De la Iglesia R, Decewicz P, Doane MP, Dominy NJ, Dziewit L, Elwasila BM, Eren AM, Franz C, Fu J, Garcia-Aljaro C, Ghedin E, Gulino KM, Haggerty JM, Head SR, Hendriksen RS, Hill C, Hyöty H, Ilina EN, Irwin MT, Jeffries TC, Jofre J, Junge RE, Kelley ST, Khan Mirzaei M, Kowalewski M, Kumaresan D, Leigh SR, Lipson D, Lisitsyna ES, Llagostera M, Maritz JM, Marr LC, McCann A, Molshanski-Mor S, Monteiro S, Moreira-Grez B, Morris M, Mugisha L, Muniesa M, Neve H, Nguyen NP, Nigro OD, Nilsson AS, O'Connell T, Odeh R, Oliver A, Piuri M, Prussin Ii AJ, Qimron U, Quan ZX, Rainetova P, Ramírez-Rojas A, Raya R, Reasor K, Rice GAO, Rossi A, Santos R, Shimashita J, Stachler EN, Stene LC, Strain R, Stumpf R, Torres PJ, Twaddle A, Ugochi Ibekwe M, Villagra N, Wandro S, White B, Whiteley A, Whiteson KL, Wijmenga C, Zambrano MM, Zschach H, Dutilh BE (2019). Global phylogeography and ancient evolution of the widespread human gut virus crAssphage. Nat Microbiol. (10):1727-1736. doi: 10.1038/s41564-019-0494-6]|PMID: 31285584.

71. Philippe M. de LAJUDIE, Ph.D; Mitchell Andrews; Julie Ardley; Bertrand Eardly; Estelle Jumas-Bilak; Nemanja Kuzmanović; Florent Lassalle; Kristina Lindström; Ridha Mhamdi; Esperanza Martínez-Romero; Lionel Moulin; Seyed Abdollah Mousavi; Xavier Nesme; Alvaro Peix; Joanna Puławska; Emma Steenkamp; Tomasz Stępkowski; Chang-Fu Tian; Pablo Vinuesa; Gehong Wei; Anne Willems; Jerri Zilli; Peter Young (2019). Minimal Standards for the Description of New Genera and Species of Rhizobia and Agrobacteria. Int J Syst Evol Microbiol. Jul;69(7):1852-1863. doi: 10.1099/ijsem.0.003426. Epub 2019 May 29|PMID:31140963|DOI: 10.1099/ijsem.0.003426|PDF.

70. Víctor González, Rosa I Santamaría, Patricia Bustos, Olga M Pérez-Carrascal, Pablo Vinuesa, Soledad Juárez, Irma Martínez, Miguel Angel Cevallos, Susana Brom, Esperanza Martínez-Romero and David Romero (2019). Phylogenomic Rhizobium species are structured by a continuum of diversity and genomic clusters. Front Microbiol. Apr 30;10:910. doi: 10.3389/fmicb.2019.00910. eCollection 2019.|PMID:31114559|DOI:10.3389/fmicb.2019.00910|PDF.

69. Alberto Vicens, Pablo Vinuesa, Miguel Arenas and Claudia Treviño (2019). Analyzing the functional divergence of Slo1 and Slo3 channel subfamilies. Mol Phylogenet Evol. 2019 Apr;133:33-41. doi: 10.1016/j.ympev.2018.12.026|DOI: 10.1016/j.ympev.2018.12.026 | PubMed PMID: 30586650.

68. Joaquín Giner-Lamia, Pablo Vinuesa, Laura Betancor, Claudia Silva, Julieta Bisio, Lorena Soleto, José A. Chabalgoity, José Luis Puente, The SalmoIber CYTED Network, Francisco García-del Portillo (2019). Genome analysis of Salmonella enterica subsp. diarizonae isolates from invasive human infections reveals enrichment of virulence-related functions in lineage ST1256. BMC Genomics. 20:99|PubMed PMID: 30704413.

2018

67. Pablo Vinuesa 2018. Un peligroso experimento a escala global: selección de bacterias multi-resistentes a antibióticos. Biotecnología en Movimiento. no. 15:10-13. PDF del número especial sobre resistencia antibióticos. Reproducido en el portal de "Investigación y Desarrollo", y disponible aquí

66. Luisa Sandner Miranda, Pablo Vinuesa, Alejandro Cravioto and Rosario Morales-Espinosa (2018).The Genomic Basis of Intrinsic and Acquired Antibiotic Resistance in the Genus Serratia. Frontiers in Microbiology 9:828. doi: 10.3389/fmicb.2018.00828|PubMed PMID: 29867787.

65. Pablo Vinuesa*, Luz Edith Ochoa-Sánchez and Bruno Contreras-Moreira (2018). GET_PHYLOMARKERS, a software package to select optimal orthologous clusters for phylogenomics and inferring pan-genome phylogenies, used for a critical geno-taxonomic revision of the genus Stenotrophomonas. Front. Microbiol. 9:771 | doi: 10.3389/fmicb.2018.00771. | PubMed PMID: 29765358 | Part of the Research Topic: Microbial Taxonomy, Phylogeny and Biodiversity.
Software code freely available on GitHub

2017

64. Luz Edith Ochoa-Sanchez and Pablo Vinuesa* (2017). Evolutionary genetic analysis uncovers multiple species with distinct habitat preferences and antibiotic resistance phenotypes in the Stenotrophomonas maltophilia complex. Front. Microbiol. 8: 1548. https://doi.org/10.3389/fmicb.2017.01548 | PubMed PMID: 28861062 | latest manuscript version on bioRxiv.

63. Santamaría RI, Bustos P, Pérez-Carrascal OM, Miranda-Sánchez F, Vinuesa P, Martínez-Flores I, Juárez S, Lozano L, Martínez-Romero E, Cevallos Má, Romero D, Dávila G, Ormeño-Orrillo E, González V (2017). Complete Genome Sequences of Eight Rhizobium Symbionts Associated with Common Bean (Phaseolus vulgaris). Genome Announc. 5(30). pii: e00645-17. doi: 10.1128/genomeA.00645-17. PubMed PMID: 28751391.

62. Williams Arony Martínez-Flores, Manuel Palma-García, Heriberto Caballero-Ortega, Alejandra Del Viento-Camacho, Eduardo López-Escamilla, Fernando Martínez-Hernández, Pablo Vinuesa, Dolores Correa and Pablo Maravilla. (2017). Genotyping Toxoplasma gondii with the B1 gene in naturally infected sheep from an endemic region in the Pacific coast of Mexico. Vector-Borne and Zoonotic Diseases. Vector Borne Zoonotic Dis. 17(7):495-502. Online Article, doi: 10.1089/vbz.2016.2085|PMID: 28530509.

61. Bruno Contreras-Moreira, Carlos Pérez Cantalapiedra, María Jesús García Pereira, Sean Gordon, John P Vogel, Ernesto Igartua, Ana M Casas and Pablo Vinuesa (2017). Analysis of plant pan-genomes and transcriptomes with GET_HOMOLOGUES-EST, a clustering solution for sequences of the same species. Front. in Plant Sci. 8:184. Online Article, doi: 10.3389/fpls.2017.00184|PMID:28261241
Software code freely available on GitHub

60. Patricia Bustos, Rosa Santamaría, Olga Pérez-Carrascal, Jose Luis Acosta, Luis Lozano, Soledad Juárez, Irma Martinez-Flores, Esperanza Martínez-Romero, Miguel Cevallos, David Romero, Guillermo Davila, Pablo Vinuesa, Fabiola Miranda, Ernesto Ormeño, and Víctor González (2017). Complete genome sequences of three Rhizobium gallicum symbionts associated to common bean (Phaseolus vulgaris). Genome Announc. 2017 Mar 16;5(11). pii: e00030-17. doi: 10.1128/genomeA.00030-17. PMID 28302777|PDF.

59. Ciro Cubillas, Fabiola Miranda-Sánchez, Antonio González, José Pedro Elizalde, Pablo Vinuesa, Susana Brom and Alejandro García-De Los Santos. (2017). A comprehensive phylogenetic analysis of copper transporting P1B ATPases from bacteria of the Rhizobiales order uncovers multiplicity, diversity and novel taxonomic subtypes. MicrobiologyOpen 2017 Feb 20. doi: 10.1002/mbo3.452. [Epub ahead of print] PMID:28217917|PDF.

2016

58. Fabiola Miranda-Sánchez, Javier Rivera and Pablo Vinuesa* 2016. Diversity patterns of Rhizobiaceae communities inhabiting soils, root-surfaces and nodules reveal a strong selection of rhizobial partners by legumes. Environ. Microbiol. 18(8): 2375-2391. doi: 10.1111/1462-2920.13061. Epub 2015 Dec 2. PMID:26395550|PDF

57. Olga M. Pérez Carrascal, David VanInsberghe, Soledad Juárez, Martin F. Polz, Pablo Vinuesa and Víctor González (2016). Population Genomics of the Symbiotic Plasmids of Sympatric Nitrogen-Fixing Rhizobium Species Associated with Phaseolus vulgaris. Environmental Microbiology. 18(8): 2660-2676. doi: 10.1111/1462-2920.13415. Epub 2016 Jul 12. PMID:27312778|PDF

56. Pablo Vinuesa*, Jose Puente, Edmundo Calva, Mussaret Zaidi, and Claudia Silva*. 2016. Complete genome sequence of Salmonella enterica serovar Typhimurium strain SO3 (sequence type 302) isolated from a baby with meningitis in Mexico. 4(2):e00285-16. doi:10.1128/genomeA.00285-16. PMID:27103717|PDF

55. Claudia Silva*, Edmundo Calva, Jose Puente, Mussaret Zaidi, and Pablo Vinuesa*. 2016. Complete genome sequence of Salmonella enterica serovar Typhimurium strain SO2 (sequence type 302) isolated from an asymptomatic child in Mexico. Genome Annoucements. Apr 14;4(2). pii: e00253-16. doi: 10.1128/genomeA.00253-16. PubMed PMID:27081133|PDF

54. Claudia Silva*, Edmundo Calva, Jose Puente, Mussaret Zaidi, and Pablo Vinuesa*. 2016. Complete genome sequence of Salmonella enterica serovar Typhimurium strain YU15 (sequence type 19) harboring the Salmonella genomic island 1 (SGI1) and the virulence plasmid (pSTV). Apr 14;4(2). pii: e00252-16. doi: 10.1128/genomeA.00252-16. Genome Annoucements. PubMed PMID:27081132|PDF

53. Sara Centeno-Leija, Pablo Vinuesa, Karol Rodríguez-Peña, Miriam Trenado-Uribe, Yair Cárdenas-Conejo, Hugo Serrano-Posada, Romina Rodríguez-Sanoja, and Sergio Sanchez. 2016. Draft Genome Sequence of an Endophytic Actinoplanes Species, Encoding Uncommon trans-AT Polyketide Synthases. Genome Annoucements. Mar 24;4(2). pii: e00164-16. doi: 10.1128/genomeA.00164-16. PubMed PMID:27013046|PDF

52. Luisa Sandner-Miranda, Pablo Vinuesa, Gloria Soberón and Rosario Morales-Espinosa. 2016. Complete genome sequence of Serratia marcescens SmUNAM836, a non-pigmented multidrug resistant strain isolated from a Mexican patient with obstructive pulmonary disease. Genome Annoucements. January/February 2016 4:e01417-15; doi:10.1128/genomeA.01417-15. Note: LSM and PV contributed equally to this work. Assembly GCA_001294565.1 , BioSample: SAMN03733572, BioProject acc. PRJNA284857. PubMed PMID:26798087|PDF

2015

51. Pablo Vinuesa* and Luz E. Ochoa-Sánchez 2015. Complete Genome Sequencing of Stenotrophomonas acidaminiphila ZAC14D2_NAIMI4_2, a Multidrug-Resistant Strain Isolated from Sediments of a Polluted River in Mexico, Uncovers New Antibiotic Resistance Genes and a Novel Class-II Lasso Peptide Biosynthesis Gene Cluster. Genome Annoucements. Accepted on Oct. 17th, 2015. PubMed PMID:26659678, PubMed PMID:26659678, GenBank acc. no. CP012900.1, Assembly GCA_001314305.1, BioSample acc. SAMN04099006, BioProject acc. PRJNA296415 | PDF.

50. Claudia Silva*, Edmundo Calva, Juan J. Calva, Magdalena Wiesnera, Marcos Fernández-Mora, José L. Puente and Pablo Vinuesa*. 2015. Complete genome sequence of a human-invasive Salmonella Typhimurium strain of the emerging sequence type 213 harboring a multidrug resistance IncA/C plasmid and a blaCMY-2-carrying IncF plasmid. Genome Announcements. November/December 2015 vol. 3 no. 6 e01323-15 PubMed PMID:26564044.

49. Edmundo Calva, Claudia Silva*, Mussaret B. Zaidi, Alejandro Sánchez-Flores, Karel Estrada, Genivaldo G. Z. Silva, Luz M. Soto-Jiménez, Magdalena Wiesner, Marcos Fernández-Moraa, Robert A. Edwards and Pablo Vinuesa* (2015). Complete genome sequencing of a multidrug-resistant and human-invasive Salmonella enterica serovar Typhimurium strain of the emerging ST213 genotype. Genome Announcements 2015 Jun 18;3(3). pii: e00663-15. doi: 10.1128/genomeA.00663-15. PubMed PMID:26089426

48. Pablo Vinuesa* and Bruno Contreras-Moreira 2015. Chapter 27. Pangenomic analysis of the Rhizobiales using the GET_HOMOLOGUES software package. Pages 271-280 in Biological Nitrogen Fixation 7, Vol. I.. Frans J. de Bruijn Editor. Wiley/Blackwell

47. Vinuesa, P.*, and B. Contreras-Moreira. 2015. Robust identification of orthologues and paralogues for microbial pan-genomics using GET_HOMOLOGUES: a case study of pIncA/C plasmids. Methods Mol. Biol. 1231:203-232. PubMed PMID: 25343868 | PDF

46. Cristina Riquelme, Sandra P. Camara, Maria de Lurdes Nunes Enes Dapkevicius, Pablo Vinuesa, Célia Costa G Silva, Xavier Malcata, Oldemiro A Rego. 2015. Characterization of the bacterial biodiversity in Pico Cheese (an artisanal Azorean food). Int. J. Food Microbiol. 192:86-94. ScienceDirect

2014

45. Ciro Cubillas, Pablo Vinuesa, Maria Luisa Tabche, Araceli Davalos, Vázquez A., Ismael Hernandez-Lucas, David Romero and Alejandro García-de los Santos. 2014. The cation diffusion facilitator protein EmfA of Rhizobium etli belongs to a novel subfamily of Mn2+/ Fe2+ transporters conserved in alpha-proteobacteria. Metallomics. Metallomics. 6(10):1808-1815. PubMed PMID: 25054342

44. Chang FM, Coyne HJ, Ramirez CA, Vinuesa P, Fang X, Ma Z, Ma D, Helmann JD, García-de Los Santos A, Wang YX, Dann CE 3rd, Giedroc DP (2014). Cu(I)-mediated allosteric switching in a copper-sensing operon repressor (CsoR). J. Biol. Chem. 2014, Jul 4;289(27):19204-17. doi: 10.1074/jbc.M114.556704. PubMed PMID: 24831014

2013

43. Bruno Contreras-Moreira* and Pablo Vinuesa* (2013). GET_HOMOLOGUES, a versatile software package for scalable and robust microbial pan-genome analysis. Appl. Env. Microbiol. 79(24):7696-7701. PubMed PMID: 24096415 | PDF Software code freely available on GitHub

42. Ciro Cubillas, Pablo Vinuesa, María Luisa Tabche and Alejandro García-de los Santos (2013). Phylogenomic analysis of Cation Diffusion Facilitator proteins uncovers Ni2+/Co2+ transporters. Metallomics 5(12):1634-1643. PubMED PMID: 24077251

41. Paulina Estrada de los Santos, Pablo Vinuesa, Lourdes Martínez Aguilar, Ann Hirsch, Jesús Caballero Mellado (2013). Phylogenetic Analysis of Burkholderia species by Multilocus Sequence Analysis. Current Microbiology 67(1):51-60. PubMed PMID: 23404651.

2012

40. Marina Escalera-Zamudio, Georgina Cobián-G>üemes, María de los Dolores Soto-del Río, Pavel Isa, Iván Sánchez-Betancourt, Aurora Parissi-Crivelli, María Teresa Martínez-Cázares, Pedro Romero, Lauro Velázquez-Salinas, Belem Huerta-Lozano, Martha Nelson, Hilda Montero, Pablo Vinuesa, Susana López, and Carlos F. Arias (2012). Characterization of an Influenza A Virus in Mexican Swine that is Related to the A/HN/009 Pandemic Clade. Virology 433(1): 176-182. PubMed PMID: 22921315.

39. Antonia I. Castillo-Rodal, Marisa Mazari-Hiriart, Lourdes Lloret-Sánchez, Bernardo Sachman-Ruiz, Pablo Vinuesa and Yolanda López-Vidal (2012). Potentially Pathogenic Nontuberculous Mycobacteria found in Aquatic Systems. Analysis from a reclaimed water and water distribution system in Mexico City. European Journal of Clinical Microbiology & Infectious Diseases 31(5):683-689. PubMed PMID: 21805195

2011

38. José L Acosta, Luis Eguiarte, Rosa I Santamaría, Patricia Bustos, Pablo Vinuesa, Esperanza Martínez-Romero, Guillermo Dávila and Víctor González (2011). Genomic Lineages of Rhizobium etli Revealed by the Extent of Nucleotide Polymorphisms and Low Recombination. BMC Evolutionary Biology 2011 Oct 17;11(1):305. Open access; PubMed PMID: 22004448

37. Cervantes L, Bustos P, Girard L, Santamaria RI, Davila G, Vinuesa P, Romero D, Brom S. (2011). The conjugative plasmid of a bean-nodulating Sinorhizobium fredii strain is assembled from sequences of two Rhizobium plasmids and the chromosome of a Sinorhizobium strain. BMC Microbiology 2011, 11:149 (25 June 2011). Open access; PubMed PMID: 21702991

36. Jesús Silva, Jesús Ulises Garza-Ramos, Fernando Reyna-Flores, Alejandro Sánchez-Pérez, Teresa Rojas-Moreno, Julieta Ivone Castro Romero, Pablo Vinuesa, Humberto Barrios. 2011. Extended-spectrum β-lactamase (ESBLs) producing Enterobacteriaceae causing nosocomial infections in Mexico, a retrospective and multicenter study. Arch Med Res. 2011 Feb;42(2):156-62. Open Access; PubMed PMID: 21565630

35. Bernardo Sachman-Ruíz, Bruno Contreras-Moreira, Enrique Zozaya, Cristina Martínez-Garza and Vinuesa, P*. 2011. Chapter 51. Primers4clades, a web server to design lineage-specific PCR primers for gene-targeted metagenomics. Pages 441-452 in Frans J. de Bruijn (ed.), Handbook of Molecular Microbial Ecology vol.I: Metagenomics and Complementary Approaches. Wiley/Blackwell. ISBN: 978-0-470-64479-9. (PDF)


2010

34. Vinuesa, P*. 2010. Multilocus Sequence Analysis and Bacterial Species Phylogeny Estimation.Chapter 3, pg. 41-64, in A. Oren and R. T. Papke (ed.), Molecular Phylogeny of Microorganisms. Caister Academic Press, Norfolk, UK. Abstract. ISBN: 978-1-904455-67-7 |PDF


2009

33. Stephen P. Cummings, Prasad Gyaneshwar, Pablo Vinuesa, Mitchell Andrews, David Humphry, Geoffrey N. Elliott, Andrew Nelson, Caroline Orr, Deborah Pettitt, Gopit R. Shah, Scott Santos, Hari. B. Krishnan, David Odee, Fatima M. Moreira, Janet I. Sprent, J. Peter W. Young and Euan K. James* (2009). Nodulation of Sesbania species by Rhizobium (Agrobacterium) strain IRBG74 and other rhizobia. (2009). Environ. Microbiol. 11(10):2510-2525. PubMed PMID: 19555380 (PDF)

32. Contreras-Moreira, B., Sachman-Ruiz, B., Figueroa-Palacios, I., and Vinuesa, P*. (2009). primers4clades: a web server that uses phylogenetic trees to design lineage-specific PCR primers for metagenomic and diversity studies. Nucl. Acids Res. 37(Web Server issue):W95-W100. Epub 2009 May 21. (Advance Access published on May 21, 2009;) doi:10.1093/nar/gkp377.; PubMed PMID: 19465390

Ormeño-Orrillo, E., M.a. Rogel, L. Lloret, A. López, J. Martínez, P. Vinuesa and E. Martínez Romero (2009). Rhizobial diversity in different land use systems in the rain forest of Los Tuxtlas, Mexico. In: Below-Ground biodiversity in the Sierra de Santa Marta, Los Tuxtlas, Veracruz, Mexico. INSTITUTO DE ECOLOGíA, A.C. ISBN: 978-607-7579-14-4.


2008

31. Vinuesa, P*., K. Rojas-Jiménez, B. Contreras-Moreira, S. K. Mahna, B. N. Prasad, H. Moe, S. B. Selvaraju, H. Thierfelder, and D. Werner. 2008. Multilocus Sequence Analysis for Assessment of the Biogeography and Evolutionary Genetics of Four Bradyrhizobium Species That Nodulate Soybeans on the Asiatic Continent.  Appl. Environ. Microbiol. 74(22):6987-6996. PubMed PMID: 18791003 doi:10.1128/AEM.00875-08 (PDF)

30. Miguel E. Rentería, Neha S. Gandhi, Pablo Vinuesa, Erik Helmerhorst, Ricardo L. Mancera (2008). A Comparative Structural Bioinformatics Analysis of the Insulin Receptor Family Ectodomain Based on Phylogenetic Information. PLoS ONE 3(11):e3667. doi:10.1371/journal.pone.0003667 (Open Access); PubMed PMID: 18989367

29. Cerritos René, Pablo Vinuesa, Luis Eguiarte, Luis Herrera-Estrella, Luis D. Alcaraz-Peraza, Jackeline L. Arvizu-Gómez, Gabriela Olmedo, Janet Siefert and Valeria Souza (2008). Bacillus coahuilensis sp. nov., a moderately halophilic species from a desiccation lagoon in the Cuatro Ciénegas Valley in Coahuila, Mexico. Int. J. Syst.  Evol. Microbiol. 58: 919-923. PubMed PMID: 18398195 (PDF)

2007

28. C. Silva y P. Vinuesa (2007).  Ecología evolutiva de bacterias y el concepto de especie: el caso de los rizobios. Capítulo 11, En Ecología Molecular. L.E. Eguiarte, V. Souza y X. Aguirre (compiladores). Secretaría de Medio Ambiente y Recursos Naturales, Instituto Nacional de Ecología, Universidad Nacional Autónoma de México, Comisión Nacional para el Conocimiento y Uso de la Biodiversidad. pp. 351-392.

27. C. Sohlenkamp, K. A. Galindo-Lagunas, Z. Guan, P. Vinuesa, S. Robinson, J. Thomas-Oates, C. R. H. Raetz, and O. Geiger. (2007). The lipid lysyl-phosphatidylglycerol is present in membranes of Rhizobium tropici CIAT899 and confers increased resistance to polymyxin B under acidic growth conditions. Molec. Plant-Microbe Interact. 20(11):1421-1430. PubMed PMID: 17977153(PDF)

26. Sebastian Poggio, Cei Abreu-Goodger, Salvador Fabela, Aurora Osorio, Georges Dreyfus, Pablo Vinuesa and Laura Camarena. A complete set of flagellar genes acquired by horizontal transfer coexists with the endogenous flagellar system in Rhodobacter sphaeroides.  J. Bacteriol. 189(8): 3208-3216. PubMed PMID: 17293429(PDF)


2006

25. Albino, U. B., Saridakis, D. P., Ferreira, M. C., Hungria, M., Vinuesa, P., Andrade, G. (2006). High diversity of diazotrophic bacteria associated with the carnivorous plant Drosera villosa var. villosa growing in oligotrop hic habitats of Brazil. Plant  Soil 287:199-207.  (PDF)

24. Ormeño-Orrillo, E, Vinuesa P, Zúñiga-Dávila, D., Martínez-Romero E (2006). Molecular diversity of native bradyrhizobia isolated from Lima bean (Phaseolus lunatus L.) in Peru. Syst. Appl. Microbiol. 29:253-262. (PDF)

23. Silva, C, Vinuesa P,  Martínez-Romero E (2006).  Species deilineation and  biogeography of rhizobia: two case studies.  In Biology of Plant-Microbe Interactions vol. 5.  Sánchez F,  Quinto  C,  López-Lara I and Geiger O  eds. Int. Soc.  for  Molecular  Plant-Microbe  Interactions.  pp.  319-324.


2005

22. Martínez-Romero, E., Lloret, L., Ormeño-Orrillo, E., Vinuesa, P., Rosenblueth, M., Rincón, R., Rogel, M.A., Silva, C., Martínez-Romero, J., Toledo, I. , López, A. (2005). Diversidad genética de bacterias mutualistas de plantas. Agrociencia IX: 293-297. (PDF)

21. Silva, C, Vinuesa P,Eguiarte LE, Souza V, and Esperanza Martínez-Romero E (2005). Evolutionary genetics and biogeographic structure of Rhizobium gallicum sensu lato, a widely distributed bacterial symbiont of diverse legumes. Mol. Ecol. 14:4033-4050. PubMed PMID: 16262857(PDF)

20. Rademaker, H. J. M. Aarts and Vinuesa P. (2005). Molecular typing of environmental isolates. Chapter 4 in Molecular Microbial Ecology. Mark Osborn and Cindy Smith (eds).
NY, Taylor & Francis. (PDF)

19. Rojas-Jiménez K, Sohlenkamp C, Geiger O, Martínez-Romero E, Werner D and Vinuesa P* (2005). A ClC chloride channel homolog and ornithine-containing membrane lipids of Rhizobium tropici CIAT899 are involved in symbiotic efficiency and acid tolerance. Mol. Plant-Microbe Interact. 18:1175-1185.PubMed PMID: 16353552 (PDF)

18. Vinuesa P* , Silva C, Werner D, Martínez-Romero E (2005). Population genetics and phylogenetic inference in bacterial molecular systematics: the roles of migration and recombination in Bradyrhizobium species cohesion and delineation. Mol. Phylogenet. Evol. 34(1):29-54.PubMed PMID: 15579380 (PDF) NOTE: F1000Prime article recommendation

17. Vinuesa P*, Silva C, Lorite, M J, Izaguirre-Mayoral, M L, Bedmar, E J, Martínez-Romero E (2005) Molecular systematics of rhizobia based on maximum likelihood and Bayesian phylogenies inferred from rrs, atpD, recA and nifH sequences, and their use in the classification of Sesbania microsymbionts from Venezuelan wetlands. Syst. Appl. Microbiol. 28:702-716. PubMed PMID: 16564961(PDF)

16. Vinuesa P* , León-Barrios M, Silva C, Willems A, Jarabo-Lorenzo A, Pérez-Galdona R, Werner D, Martínez-Romero E (2005). Bradyrhizobium canariense sp. nov., an acid-tolerant endosymbiont that nodulates endemic genistoid legumes (Papilionoideae:Genisteae) from the Canary Islands, along with Bradyrhizobium japonicum bv. genistearum, Bradyrhizobium genospecies a and Bradyrhizobiumgenospecies b. Int. J. Syst. Evol. Microbiol. 55:569-575. PubMed PMID: 15774626(PDF)

15. Yousef Shamseldin A A, Vinuesa, P, Thierfelder H, Werner, D (2005). Rhizobium etli and Rhizobium gallicum nodulate Phaseolus vulgaris in Egyptian soils and display cultivar-dependent symbiotic efficiency. Symbiosis 38(2): 145-162. (PDF)


2004

14. Medrano-Soto A, Moreno-Hagelsieb G, Vinuesa P, Chisten A, Collado-Vidés J (2004). Successful lateral transfer requires codon usage compatibility between foreign genes and recipient genomes. Mol. Biol. Evol. 21(10) 1-11 PubMed PMID: 15240837(PDF)

13. Vinuesa P*. and C. Silva (2004).  Species delineation and biogeography of symbiotic bacteria associated with cultivated and wild legumes.  In Biological Resources and Migration. Ed. Dietrich Werner.  Springer. (PDF)

 

2003

12. Silva C, Vinuesa P, Eguiarte LE, Martinez-Romero E, Souza V (2003). Rhizobium etli and Rhizobium gallicum nodulate common bean (Phaseolus vulgaris) in a traditionally managed milpa plot in Mexico: population genetics and biogeographic implications. Appl. Environ. Microbiol. 69:884-893. PubMed PMID: 12571008(PDF)

11. Steele HL, P. Vinuesa P, Werner D (2003). A leucine biosynthesis mutant of Rhizobium tropici CIAT899 which survives at pH 3.5. Biol. Fertil. Soils 38:84-88.  (PDF)

10. Vinuesa P *, Neumann-Silkow F, Pacios-Bras C, Spaink HP, Martinez-Romero E, Werner D (2003). Genetic analysis of a pH-regulated operon from Rhizobium tropici CIAT899 involved in acid tolerance and nodulation competitiveness. Mol. Plant-Microbe Interact. 16:159-168. PubMed PMID: 12575750(PDF)

9. Werner D, Neumann-Silkow F, Prasad BN, Steele H, Redecker D, Vinuesa P, Mueller P (2003). Biotechnology and biodiversity of plant-microbe interactions. In: Prasad BN (ed) Biotechnology in Sustainable Biodiversity and Food Security, Chapter 3. SCIENCE PUBLISHERS, Inc. Enfield, New Hampshire, USA.


2002

8. Pacios-Bras C, van der Burgt YE, Deelder AM, Vinuesa P, Werner D, Spaink HP (2002). Novel lipochitin oligosaccharide structures produced by Rhizobium etli KIM5s. Carbohydr. Res. 337:1191-200. PubMed PMID: 12110194(PDF)


2001

7. Tan Z, Hurek T, Vinuesa P, Muller P, Ladha JK, Reinhold-Hurek B (2001). Specific detection of Bradyrhizobium and Rhizobium srains colonizing rice (Oryza sativa) roots by 16S-23S ribosomal DNA intergenic spacer-targeted PCR. Appl. Environ. Microbiol. 67:3655-3664. PubMed PMID: 11472944(PDF)


2000

6. Jarabo-Lorenzo A, Velazquez E, Perez-Galdona R, Vega-Hernandez MC, Martinez-Molina E, Mateos PE, Vinuesa P, Martinez-Romero E, Leon-Barrios M (2000). Restriction fragment length polymorphism analysis of 16S rDNA and low molecular weight RNA profiling of rhizobial isolates from shrubby legumes endemic to the Canary islands. Syst. Appl. Microbiol. 23:418-425. PubMed PMID: 11108022


1999

5. Redecker D, Feder IS, Vinuesa P, Batinic T, Schulz U, Kosch K, Werner D (1999). Biocontrol strain Pseudomonas sp. W34: specific detection and quantification in the rhizosphere of Cucumis sativus with a DNA probe and genotypic characterization by DNA fingerprinting. Z Naturforsch [C] 54:359-370. PubMed PMID: 10431388(PDF)

4. Vinuesa P* , Reuhs BL, Breton C, Werner D (1999). Identification of a plasmid-borne locus in Rhizobium etli KIM5s involved in lipopolysaccharide O-chain biosynthesis and nodulation of Phaseolus vulgaris. J. Bacteriol. 181:5606-5614. PubMed PMID: 10482500(PDF)

3. Vinuesa P*, Rademaker JLW, de Bruijn FJ, Werner D (1999) Characterization of Bradyrhizobium spp. strains by RFLP analysis of amplified 16S rDNA and rDNA intergenic spacer regions. In: Martínez E, Hernández G (eds) Highlights on Nitrogen Fixation. Plenum Publishing Corporation, New York, p 275-279. (PDF)


1998

2. Vinuesa P* , Rademaker JLW, de Bruijn FJ, Werner D (1998). Genotypic characterization of Bradyrhizobium strains nodulating endemic woody legumes of the Canary Islands by PCR-restriction fragment length polymorphism analysis of genes encoding 16S rRNA (16S rDNA) and 16S-23S rDNA intergenic spacers, repetitive extragenic palindromic PCR genomic fingerprinting and partial 16S rDNA sequencing. Appl. Environ. Microbiol. 64:2096-2104. PubMed PMID: 9603820 (PDF)

1. Rademaker JLW, Louws, F. J., Rossbach, U., Vinuesa, P., and de Bruijn, F. J. 1998. Computer-assisted pattern analysis of molecular fingerprints and database construction. In: Akkermans ADL, van Elsas JE, de Bruijn FJ (eds) Molecular ecology manual. Kluwer Academic Publishers, Dordrecht, section (7.1.3), pp 1-33.

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