Ingeniería Genómica
Este programa está dedicado a la comprensión de las fuerzas y mecanismos que han forjado la arquitectura genómica de proteobacterias asociadas a plantas (específicamente Rhizobium sp.), tanto en el corto plazo como con una perspectiva evolutiva.
El objetivo a largo plazo es utilizar este conocimiento para desarrollar nuevas estrategias en ingeniería genómica. Para ese fin, nuestras líneas de investigación inciden en los mecanismos y consecuencias evolutivas de la recombinación homóloga, recombinación sitio-específica durante la conjugación de plásmidos, regulación de la transferencia conjugativa, genómica funcional de plásmidos (incluyendo el análisis de funciones codificadas en plásmidos y el papel de factores sigma extracitoplásmicos en respuestas a estrés), así como sistemática molecular, microevolución y filogeografía. Parte de este conocimiento se está integrando en la generación de nuevos enfoques para la generación de deleciones programadas y mutagénesis global del genoma.
Nuestro trabajo combina el análisis bioinformático con enfoques genéticos y de biología molecular así como de análisis de genética de poblaciones.

Académicos del Grupo
Nombre | Puesto | Categoría | Correo | Teléfono |
---|---|---|---|---|
David René Romero Camarena | Investigador | Inv. Tit. C T.C. Definitivo | dromero@ccg.unam.mx | (777) 3175867 |
Susana Brom Klanner | Investigador | Inv. Tit. B T.C. Definitivo | sbrom@ccg.unam.mx | (777) 3291691 |
Alejandro García de los Santos | Investigador | Inv. Tit. A T.C. Interino | alex@ccg.unam.mx | (777) 3175867 |
Pablo Vinuesa Fleischmann | Investigador | Inv. Tit. B T.C. Definitivo | vinuesa@ccg.unam.mx | (777) 3175867 |
Araceli Elvira Dávalos Rodríguez | Técnico Académico | Tec. Acad. Tit. C T.C. Definitivo | davalos@ccg.unam.mx | (777) 3175867 |
Laura Cervantes de la Luz | Técnico Académico | Tec. Acad. Tit. B T.C. Definitivo | lcervant@ccg.unam.mx | (777) 3175867 |
Javier Rivera Campos | Técnico Académico | Tec. Acad. Tit. A T.C. Definitivo | javier@ccg.unam.mx | (777) 3175867 |
María del Carmen Guadarrama Román | Posdoctoral | DGAPA | carmengr@ccg.unam.mx | (777 ) 3175867 |
Publicaciones del Grupo
Año | Publicación | PMID |
---|---|---|
2020 | Carballo-Ontiveros, M, Cazares, A, Vinuesa, P, Kameyama, L, Guarneros, G. (2020). "The Concerted Action of Two B3-Like Prophage Genes Excludes Superinfecting Bacteriophages by Blocking DNA Entry into pseudomonas Aeruginosa". J VIROL. 94(15):e00953-20-. [doi:10.1128/JVI.00953-20] | 32461312 |
2020 | Bañuelos-Vazquez, L, Cazares, D, Rodríguez, S, Cervantes-De la Luz, L, Sánchez-López, R, Castellani, L, Tejerizo, G, Brom, S. (2020). "Transfer of the Symbiotic Plasmid of Rhizobium etli CFN42 to Endophytic Bacteria Inside Nodules.". Frontiers in Microbiology. 11():-. [doi:10.3389/fmicb.2020.01752] | 32849381 |
2020 | Giner-Lamia J, Vinuesa P, Betancor L, Silva C, Bisio J, Soleto L, Chabalgoity JA, Puente JL, Salmonella CYTED Network, García-Del Portillo F. (2020). "Correction to: Genome analysis of Salmonella enterica subsp. diarizonae isolates from invasive human infections reveals enrichment of virulence-related functions in lineage ST1256.". Bmc Genomics. 21(1):373-373. [doi:10.1186/s12864-020-06781-x] | 32456693 |
2020 | Cabañas, N, Becerra, A, Romero, D, Govezensky, T, Espinosa-Aguirre, J, Camacho-Carranza, R. (2020). "Repetitive DNA profile of the amphibian mitogenome.". Bmc Bioinformatics. 21(1):-. [doi:10.1186/s12859-020-3532-8] | 32429835 |
2020 | Guzmán-Trampe, S, Ikeda, H, Vinuesa, P, Macías-Rubalcava, M, Esquivel, B, Centeno-Leija, S, Tapia-Cabrera, S, Mora-Herrera, S, Ruiz-Villafán, B, Rodríguez-Sanoja, R, Sanchez, S. (2020). "Production of distinct labdane-type diterpenoids using a novel cryptic labdane-like cluster from Streptomyces thermocarboxydus K155.". Applied Microbiology And Biotechnology. 104(2):741-750. [doi:10.1007/s00253-019-10240-3] | 31807886 |
2020 | López-Sámano, M, Beltrán, L, Sánchez-Thomas, R, Dávalos, A, Villaseñor, T, García-García, J, García-de los Santos, A. (2020). "A novel way to synthesize pantothenate in bacteria involves ß-alanine synthase present in uracil degradation pathway". MICROBIOLOGYOPEN. ():-. [doi:10.1002/mbo3.1006] | 32112625 |
2020 | Bañuelos-Vazquez, L, Castellani, L, Luchetti, A, Romero, D, Torres Tejerizo, G, Brom, S. (2020). "Role of plant compounds in the modulation of the conjugative transfer of pRet42a". Plos One. 15(8):238218-238218. [doi:10.1371/journal.pone.0238218] | 32845909 |
2019 | Cervantes, L, Miranda-Sánchez, F, Torres Tejerizo, G, Romero, D, Brom, S. (2019). "Plasmid pSfr64a and the symbiotic plasmid pSfr64b of Sinorhizobium fredii GR64 control each other's conjugative transfer through quorum-sensing elements.". Plasmid. 106():-. [doi:10.1016/j.plasmid.2019.102443] | 31689451 |
2019 | Silva C, Calva E, Fernández-Mora M, Puente JL, Vinuesa P. (2019). "Population analysis of D6-like plasmid prophage variants associated with specific IncC plasmid types in the emerging Salmonella Typhimurium ST213 genotype.". Plos One. 14(10):e0223975-. [doi:10.1371/journal.pone.0223975] | 31626639 |
2019 | de Lajudie, P, Andrews, M, Ardley, J, Eardly, B, Jumas-Bilak, E, Kuzmanovic, N, Lassalle, R, Lindstrom, K, Mhamdi, R, Martinez-Romero, E, Moulin, L, Mousavi, S, Nesme, X, Peix, A, Pulawska, J, Steenkamp, E, Stepkowski, T, Tian, C, Vinuesa, P, Wei, G, Willems, A, Zili, J, Young, P. (2019). "Minimal standards for the description of new genera and species of Rhizobia and agrobacteria". International Journal Of Systematic And Evolutionary Microbiology. 69(7):1852-1863. [doi:10.1099/ijsem.0.003426] | 31140963 |
2019 | Elizalde-Díaz JP, Hernández-Lucas I, Medina-Aparicio L, Dávalos A, Leija A, Alvarado-Affantranger X, García-García JD, Hernández G, Garcia-de Los Santos A. (2019). "Rhizobium tropici CIAT 899 copA gene plays a fundamental role in copper tolerance in both free life and symbiosis with Phaseolus vulgaris.". MICROBIOLOGY-UK. 165(6):651-661. [doi:10.1099/mic.0.000803] | 31081746 |
2019 | Castellani, L, Nilsson, J, Wibberg, D, Schlueter, A, Puehler, A, Brom, S, Pistorio, M, Tejerizo, G. (2019). "Insight into the structure, function and conjugative transfer of pLPU83a, an accessory plasmid of Rhizobium Favelukesii LPU83". Plasmid. 103():9-16. [doi:10.1016/j.plasmid.2019.03.004] | 30928704 |
2019 | Gonzalez, V, Isela Santamaria, R, Bustos, P, Maria Perez-Carrascal, O, Vinuesa, P, Juarez, S, Martinez-Flores, I, Angel Cevallos, M, Brom, S, Martinez-Romero, E, Romero, D. (2019). "Phylogenomic Rhizobium Species Are Structured by a Continuum of Diversity and Genomic Clusters". Frontiers in Microbiology. 10():910-. [doi:10.3389/fmicb.2019.00910] | 31114559 |
2019 | Vicens, A, Vinuesa, P, Arenas, M, Treviño, C. (2019). "Analyzing the functional divergence of Slo1 and Slo3 channel subfamilies". Molecular Phylogenetics And Evolution. 133():33-41. [doi:10.1016/j.ympev.2018.12.026] | 30586650 |
2019 | Giner-Lamia, J, Vinuesa, P, Betancor, L, Silva, C, Bisio, J, Soleto, L, Chabalgoity, J, Puente, J, Soncini, F, García-Vescovi, E, Flores, G, Pedraza, J, Yim, L, García, C, Astocondor, L, Ochoa, T, Hinostroza, N, Graciela Pucciarelli, M, Hernández-Alvarez, A, Del Moral, V, García-Del Portillo, F. (2019). "Genome analysis of Salmonella enterica subsp. diarizonae isolates from invasive human infections reveals enrichment of virulence-related functions in lineage ST1256". Bmc Genomics. 20(1):99-99. [doi:10.1186/s12864-018-5352-z] | 30704413 |
2019 | Bañuelos-Vazquez, L, Torres Tejerizo, G, Cervantes-De La Luz, L, Girard, L, Romero, D, Brom, S. (2019). "Conjugative transfer between Rhizobium etli endosymbionts inside the root nodule". Environmental Microbiology. ():-. [doi:10.1111/1462-2920.14645] | |
2019 | Edwards, R, Vega, A, Norman, H, Ohaeri, M, Levi, K, Dinsdale, E, Cinek, O, Aziz, R, McNair, K, Barr, J, Bibby, K, Brouns, S, Cazares, A, de Jonge, P, Desnues, C, Díaz Muñoz, S, Fineran, P, Kurilshikov, A, Lavigne, R, Mazankova, K, McCarthy, D, Nobrega, F, Reyes Muñoz, A, Tapia, G, Trefault, N, Tyakht, A, Vinuesa, P, Wagemans, J, Zhernakova, A, Aarestrup, F, Ahmadov, G, Alassaf, A, Anton, J, Asangba, A, Billings, E, Cantu, V, Carlton, J, Cazares, D, Cho, G, Condeff, T, Cortés, P, Cranfield, M, Cuevas, D, De la Iglesia, R, Decewicz, P, Doane, M, Dominy, N, Dziewit, L, Elwasila, B, Eren, A, Franz, C, Fu, J, Garcia-Aljaro, C, Ghedin, E, Gulino, K, Haggerty, J, Head, S, Hendriksen, R, Hill, C, Hyöty, H, Ilina, E, Irwin, M, Jeffries, T, Jofre, J, Junge, R, Kelley, S, Khan Mirzaei, M, Kowalewski, M, Kumaresan, D, Leigh, S, Lipson, D, Lisitsyna, E, Llagostera, M, Maritz, J, Marr, L, McCann, A, Molshanski-Mor, S, Monteiro, S, Moreira-Grez, B, Morris, M, Mugisha, L, Muniesa, M, Neve, H, Nguyen, N, Nigro, O, Nilsson, A, O’Connell, T, Odeh, R, Oliver, A, Piuri, M, Prussin, A, Qimron, U, Quan, Z, Rainetova, P, Ramírez-Rojas, A, Raya, R, Reasor, K, Rice, G, Rossi, A, Santos, R. (2019). "Global phylogeography and ancient evolution of the widespread human gut virus crAssphage.". Nature microbiology. 4(10):-. [doi:10.1038/s41564-019-0494-6] | 31285584 |
2018 | Aguilar A, Mora Y, Dávalos A, Girard L, Mora J, Peralta H. (2018). "Analysis of genome sequence and symbiotic ability of rhizobial strains isolated from seeds of common bean (Phaseolus vulgaris).". Bmc Genomics. 19(1):645-645. [doi:10.1186/s12864-018-5023-0] | 30165827 |
2018 | González-Sánchez A, Cubillas CA, Miranda F, Dávalos A, García-de Los Santos A. (2018). "The ropAe gene encodes a porin-like protein involved in copper transit in Rhizobium etli CFN42". MICROBIOLOGYOPEN. 7(3):e00573-. [doi:10.1002/mbo3.573] | 29280343 |
2018 | Sandner-Miranda, L, Vinuesa, P, Cravioto, A, Morales-Espinosa, R. (2018). "The genomic basis of intrinsic and acquired antibiotic resistance in the genus Serratia". Frontiers in Microbiology. 9(MAY):828-828. [doi:10.3389/fmicb.2018.00828] | 29867787 |
2018 | Vinuesa, P, Ochoa-Sánchez, L, Contreras-Moreira, B. (2018). "GET_PHYLOMARKERS, a software package to select optimal orthologous clusters for phylogenomics and inferring pan-genome phylogenies, used for a critical geno-taxonomic revision of the genus Stenotrophomonas". Frontiers in Microbiology. 9(MAY):771-771. [doi:10.3389/fmicb.2018.00771] | 29765358 |
2017 | Silva, C, Betancor, L, Garcia, C, Astocondor, L, Hinostroza, N, Bisio, J, Rivera, J, Perezgasga, L, Perez Escanda, V, Yim, L, Jacobs, J, Garcia-del Portillo, F, Chabalgoity, J, Puente, J, SalmoIber CYTED Network. (2017). "Characterization of Salmonella enterica isolates causing bacteremia in Lima, Peru, using multiple typing methods". Plos One. 12(12):e0189946-. [doi:10.1371/journal.pone.0189946] | 29267322 |
2017 | Romero, D, Torres-Irineo, E, Kern, S, Orellana, R, Hernandez-Cerda, M. (2017). "Determination of the soil moisture recession constant from satellite data: A case study of the yucatan peninsula". INT J REMOTE SENS. 38(20):5793-5813. [doi:10.1080/01431161.2017.1346844] | |
2017 | Cubillas, C, Miranda-Sánchez, F, González-Sánchez, A, Elizalde, J, Vinuesa, P, Brom, S, García-de los Santos, A. (2017). "A comprehensive phylogenetic analysis of copper transporting P1BATPases from bacteria of the Rhizobiales order uncovers multiplicity, diversity and novel taxonomic subtypes". MICROBIOLOGYOPEN. 6(4):e00452-. [doi:10.1002/mbo3.452] | 28217917 |
2017 | Martínez-Flores, W, Palma-García, J, Caballero-Ortega, H, Del Viento-Camacho, A, López-Escamilla, E, Martínez-Hernández, F, Vinuesa, P, Correa, D, Maravilla, P. (2017). "Genotyping Toxoplasma Gondii with the B1 Gene in Naturally Infected Sheep from an Endemic Region in the Pacific Coast of Mexico". VECTOR-BORNE AND ZOONOTIC DISEASES. 17(7):495-502. [doi:10.1089/vbz.2016.2085] | 28530509 |
2017 | Santamaría, R, Bustos, P, Pérez-Carrascal, O, Miranda-Sánchez, F, Vinuesa, P, Martínez-Flores, I, Juárez, S, Lozano, L, Martínez-Romero, E, Cevallos, M, Romero, D, Dávila, G, Ormeño-Orrillo, E, González, V. (2017). "Complete Genome Sequences of Eight Rhizobium Symbionts Associated with Common Bean ( Phaseolus vulgaris ).". Genome Announcements. 5(30):-. [doi:10.1128/genomeA.00645-17] | 28751391 |
2017 | Alfredo Banuelos-Vazquez, L, Torres Tejerizo, G, Brom, S. (2017). "Regulation of conjugative transfer of plasmids and integrative conjugative elements". Plasmid. 91():82-89. [doi:10.1016/j.plasmid.2017.04.002] | 28438469 |
2017 | Bustos, P, Santamaría, R, Pérez-Carrascal, O, Acosta, J, Lozano, L, Juárez, S, Martínez-Flores, I, Martínez-Romero, E, Cevallos, M, Romero, D, Dávila, G, Vinuesa, P, Miranda, F, Ormeño, E, González, V. (2017). "Complete Genome Sequences of Three Rhizobium gallicum Symbionts Associated with Common Bean ( Phaseolus vulgaris ).". Genome Announcements. 5(11):-. [doi:10.1128/genomeA.00030-17] | 28302777 |
2016 | Calvillo, G, Romero, D. (2016). "On the closest point to the origin in transportation polytopes". DISCRETE APPLIED MATHEMATICS. 210():88-102. [doi:10.1016/j.dam.2015.01.027] | |
2016 | Miranda-Sanchez, F, Rivera, J, Vinuesa, P. (2016). "Diversity patterns of Rhizobiaceae communities inhabiting soils, root surfaces and nodules reveal a strong selection of rhizobial partners by legumes". Environmental Microbiology. 18(8):2375-2391. [doi:10.1111/1462-2920.13061] | 26395550 |
2016 | Perez Carrascal, O, VanInsberghe, D, Juarez, S, Polz, M, Vinuesa, P, Gonzalez, V. (2016). "Population genomics of the symbiotic plasmids of sympatric nitrogen-fixing Rhizobium species associated with Phaseolus vulgaris". Environmental Microbiology. 18(8):2660-2676. [doi:10.1111/1462-2920.13415] | 27312778 |
2016 | Hernández-Tamayo, R, Torres-Tejerizo, G, Brom, S, Romero, D. (2016). "Site-specific bacterial chromosome engineering mediated by IntA integrase from Rhizobium etli". Bmc Microbiology. 16(1):133-133. [doi:10.1186/s12866-016-0755-y] | 27357704 |
2016 | Silva, C, Calva, E, Puente, J, Zaidi, M, Vinuesa, P. (2016). "Complete genome sequence of Salmonella enterica serovar Typhimurium strain YU15 (sequence type 19) harboring the Salmonella genomic island 1 and virulence plasmid pSTV". Microbiology Resource Announcements. 4(2):e00252-16-. [doi:10.1128/genomeA.00252-16] | 27081132 |
2016 | Sandner-Miranda, L, Vinuesa, P, Sober�n-Ch�vez, G, Morales-Espinosa, R. (2016). "Complete genome sequence of Serratia marcescens SmUNAM836, a nonpigmented multidrug-resistant strain isolated from a Mexican patient with obstructive pulmonary disease". Microbiology Resource Announcements. 4(1):e01417-15-. [doi:10.1128/genomeA.01417-15] | 26798087 |
2016 | Centeno-Leija, S, Vinuesa, P, Karol Rodr�guez-Pe�a, , Trenado-Uribe, M, Yair C�rdenas-Conejo, , Serrano-Posada, H, Romina Rodr�guez-Sanoja, , S�ncheza, S. (2016). "Draft genome Sequence of an endophytic actinoplanes species, encoding uncommon trans-Acyltransferase polyketide synthases". Microbiology Resource Announcements. 4(2):e00164-16-. [doi:10.1128/genomeA.00164-16] | 27013046 |
2016 | Vinuesa, P, Puente, J, Calva, E, Zaidi, M, Silva, C. (2016). "Complete genome sequence of Salmonella enterica serovar Typhimurium strain SO3 (sequence type 302) isolated from a baby with meningitis in Mexico". Microbiology Resource Announcements. 4(2):e00285-16-. [doi:10.1128/genomeA.00285-16] | 27103717 |
2016 | Silva, C, Calva, E, Puente, J, Zaidi, M, Vinuesa, P. (2016). "Complete genome sequence of Salmonella enterica serovar Typhimurium strain SO2 (sequence type 302) isolated from an asymptomatic child in Mexico". Microbiology Resource Announcements. 4(2):e00253-16-. [doi:10.1128/genomeA.00253-16] | 27081133 |
2015 | Torres Tejerizo, G, Bañuelos, L, Cervantes, L, Gaytán, P, Pistorio, M, Romero, D, Brom, S. (2015). "Development of molecular tools to monitor conjugative transfer in Rhizobia". JOURNAL OF MICROBIOLOGICAL METHODS. 117():155-163. [doi:10.1016/j.mimet.2015.08.005] | 26272377 |
2015 | López-Fuentes E, Torres-Tejerizo G, Cervantes L, Brom S. (2015). "Genes encoding conserved hypothetical proteins localized in the conjugative transfer region of plasmid pRet42a from Rhizobium etli CFN42 participate in modulating transfer and affect conjugation from different donors". Frontiers in Microbiology. 5():793-793. [doi:10.3389/fmicb.2014.00793] | 25642223 |
2015 | Riquelme, C, Camara, S, Enes Dapkevicius, M, Vinuesa, P, Gomes da Silva, C, Xavier Malcata, F, Rego, O. (2015). "Characterization of the bacterial biodiversity in Pico cheese (an artisanal Azorean food)". International Journal Of Food Microbiology. 192():86-94. [doi:10.1016/j.ijfoodmicro.2014.09.031] | 25440551 |
2015 | Pablo Vinuesa, Contreras-Moreira, B. (2015). "Robust Identification of Orthologues and Paralogues for Microbial Pan-Genomics Using GET_HOMOLOGUES: A Case Study of pIncA/C plasmids". Bacterial Pangenomics: Methods And Protocols. 1231():203-232. [doi:10.1007/978-1-4939-1720-4_14] | |
2015 | Yáñez-Cuna, F, Castellanos, M, Romero, D. (2015). "Biased gene conversion in Rhizobium etli is caused by preferential double-strand breaks on one of the recombining homologs". Journal Of Bacteriology. 198(3):591-599. [doi:10.1128/JB.00768-15] | 26598365 |
2015 | Vinuesa, P, Ochoa-S�nchez, L. (2015). "Complete genome sequencing of Stenotrophomonas acidaminiphila ZAC14D2_NAIMI4_2, a multidrug-resistant strain isolated from sediments of a polluted river in Mexico, uncovers new antibiotic resistance genes and a novel class-II lasso peptide biosynthesis gene cluster". Microbiology Resource Announcements. 3(6):e0143315-. [doi:10.1128/genomeA.01433-15] | 26659678 |
2015 | Vinuesa, P, Contreras-Moreira, B. (2015). "Pangenomic Analysis of the Rhizobiales Using the GET_HOMOLOGUES Software Package". Biological Nitrogen Fixation. 1-2():271-280. [doi:10.1002/9781119053095.ch27] | |
2014 | Brom, S, Pistorio, M, Romero, D, Torres-Tejerizo, G. (2014). "Boundaries for conjugative transfer of rhizobial plasmids: Restraining and releasing factors". Plasticity In Plant-Growth-Promoting And Phytopathogenic Bacteria. 9781461492030():43-54. [doi:10.1007/978-1-4614-9203-0_3] | |
2014 | Cubillas, C, Vinuesa, P, Tabche, M, Davalos, A, Vazquez, A, Hernandez-Lucas, I, Romero, D, Garcia-de los Santos, A. (2014). "The cation diffusion facilitator protein EmfA of Rhizobium etli belongs to a novel subfamily of Mn<sup>2+</sup>/Fe<sup>2+</sup> transporters conserved in a-proteobacteria". Metallomics. 6(10):1808-1815. [doi:10.1039/c4mt00135d] | 25054342 |
2014 | Rogel, M, Bustos, P, Santamaría, R, González Zúñiga, V, Romero, D, Cevallos, M, Lozano, L, Castro-Mondragón, J, Martínez-Romero, J, Ormeño-Orrillo, E, Martinez-Romero, E. (2014). "Genomic basis of symbiovar mimosae in Rhizobium etli". Bmc Genomics. 15(1):575-575. [doi:10.1186/1471-2164-15-575] | 25005495 |
2014 | Chang, F, Coyne, H, Cubillas Ramírez, C, Vinuesa Fleischmann, P, Fang, X, Ma, Z, Ma, D, Helmann, J, García de los Santos, A, Wang, Y, Dann, C, Giedroc, D. (2014). "Cu(I)-mediated allosteric switching in a copper-sensing operon repressor (CsoR)". JOURNAL OF BIOLOGICAL CHEMISTRY. 289(27):19204-19217. [doi:10.1074/jbc.M114.556704] | 24831014 |
2014 | Tejerizo, G, Pistorio, M, Althabegoiti, M, Cervantes de la Luz, L, Wibberg, D, Schluter, A, Puhler, A, Lagares, A, Romero Camarena, D, Brom Klanner, S. (2014). "Rhizobial plasmid pLPU83a is able to switch between different transfer machineries depending on its genomic background". Fems Microbiology Ecology. 88(3):565-578. [doi:10.1111/1574-6941.12325] | 24646299 |
2013 | Cubillas Ramírez, C, Vinuesa Fleischmann, P, Tabche, M, García de los Santos, A. (2013). "Phylogenomic analysis of Cation Diffusion Facilitator proteins uncovers Ni2+/Co2+ transporters". Metallomics. 5(12):1634-1643. [doi:10.1039/c3mt00204g] | 24077251 |
2013 | Contreras-Moreira, B, Vinuesa Fleischmann, P. (2013). "GET_HOMOLOGUES, a versatile software package for scalable and robust microbial pangenome analysis". Applied And Environmental Microbiology. 79(24):7696-7701. [doi:10.1128/AEM.02411-13] | 24096415 |
2013 | Hernández Tamayo, R, Sohlenkamp, C, Puente, J, Brom Klanner, S, Romero Camarena, D. (2013). "Characterization of IntA, a bidirectional site-specific recombinase required for conjugative transfer of the symbiotic plasmid of Rhizobium etli CFN42". Journal Of Bacteriology. 195(20):4668-4677. [doi:10.1128/JB.00714-13] | 23935046 |
2013 | Estrada De Los Santos, P, Vinuesa Fleischmann, P, Martínez Aguilar, L, Hirsch, A, Caballero Mellado, J. (2013). "Phylogenetic analysis of Burkholderia species by multilocus Sequence Analysis". Current Microbiology. 67(1):51-60. [doi:10.1007/s00284-013-0330-9] | 23404651 |
2012 | Escalera-Zamudio, M, Cobian-Guemes, G, Soto-del Río, M, Isa, P, Sánchez-Betancourt, I, Parissi-Crivelli, A, Martinez-Cazares, M, Romero, P, Velázquez-Salinas, L, Huerta-Lozano, B, Nelson, M, Montero, H, Vinuesa Fleischmann, P, López, S, Arias, C. (2012). "Characterization of an influenza A virus in Mexican swine that is related to the A/H1N1/2009 pandemic clade". Virology. 433(1):176-182. [doi:10.1016/j.virol.2012.08.003] | 22921315 |
2012 | Bonilla-Rosso, G, Eguiarte, L, Romero Camarena, D, Travisano, M, Souza, V. (2012). "Understanding microbial community diversity metrics derived from metagenomes: Performance evaluation using simulated data sets". Fems Microbiology Ecology. 82(1):37-49. [doi:10.1111/j.1574-6941.2012.01405.x] | 22554028 |
2012 | Tejerizo, G, Lozano, L, Gonzalez, V, Bustos, P, Romero, D, Brom, S. (2012). "Draft genome sequence of the bean-nodulating Sinorhizobium fredii strain GR64". Journal Of Bacteriology. 194(24):6978-6978. [doi:10.1128/JB.01882-12] | 23209231 |
2012 | Calvillo, G, Romero, D. (2012). "The dominance assignment problem". DISCRETE OPTIM. 9(3):149-158. [doi:10.1016/j.disopt.2012.06.001] | |
2012 | Castillo-Rodal, A, Mazari-Hiriart, M, Lloret-Sánchez, L, Sachman Ruiz, B, Vinuesa Fleischmann, P, López-Vidal, Y. (2012). "Potentially pathogenic nontuberculous mycobacteria found in aquatic systems. Analysis from a reclaimed water and water distribution system in Mexico City". European Journal Of Clinical Microbiology and Infectious Diseases. 31(5):683-694. [doi:10.1007/s10096-011-1359-y] | 21805195 |
2012 | Romero, D, Alonso-Pecina, F. (2012). "Ad hoc heuristic for the cover printing problem". DISCRETE OPTIM. 9(1):17-28. [doi:10.1016/j.disopt.2011.10.002] | |
2012 | Romero Camarena, D. (2012). "Aspectos bioeticos de la generación de células sintéticas". Valores para la sociedad contemporánea. En qué pueden creer los que no creen. ():456-462. | |
2011 | Acosta, J, Eguiarte, L, Santamaria Gutiérrez, R, Bustos Arcos, V, Vinuesa P, Martínez Romero, M, Dávila Ramos, J, González Zúñiga, V. (2011). "Genomic lineages of Rhizobium etli revealed by the extent of nucleotide polymorphisms and low recombination". Bmc Evolutionary Biology. 11(1):305-305. [doi:10.1186/1471-2148-11-305] | 22004448 |
2011 | Cervantes de la Luz, L, Bustos Arcos, V, Girard Cuesy, M, Santamaria Gutiérrez, R, Dávila Ramos, J, Vinuesa Fleischmann, P, Romero Camarena, D, Brom Klanner, S. (2011). "The conjugative plasmid of a bean-nodulating Sinorhizobium fredii strain is assembled from sequences of two Rhizobium plasmids and the chromosome of a Sinorhizobium strain". Bmc Microbiology. 11(1):1-11. [doi:10.1186/1471-2180-11-149] | 21702991 |
2011 | Sachman-Ruiz, B, Contreras-Moreira, B, Zozaya, E, Martínez-Garza, C, Vinuesa, P. (2011). "Primers4clades: A Web Server to Design Lineage-Specific PCR Primers for Gene-Targeted Metagenomics". Handbook of Molecular Microbial Ecology I: Metagenomics and Complementary Approaches. 1():441-452. [doi:10.1002/9781118010518.ch51] | |
2011 | Villaseñor Toledo, T, Dávalos Rodríguez, A, Lozano Aguirre Beltrán, L, Romero Camarena, D, García de los Santos, A. (2011). "Housekeeping genes essential for pantothenate biosynthesis are plasmid-encoded in Rhizobium etli and Rhizobium leguminosarum". Bmc Microbiology. 11():66-66. [doi:10.1186/1471-2180-11-66] | 21463532 |
2011 | Landeta Escamilla, C, Dávalos Rodríguez, A, Cevallos Gaos, M, Geiger, O, Brom Klanner, S, Romero Camarena, D. (2011). "Plasmids with a chromosome-like role in Rhizobia". Journal Of Bacteriology. 193(6):1317-1326. [doi:10.1128/JB.01184-10] | 21217003 |
2011 | Silva-Sanchez, J, Garza-Ramos, J, Reyna-Flores, F, Sánchez-Pérez, A, Rojas-Moreno, T, Andrade-Almaraz, V, Pastrana, J, Castro-Romero, J, Vinuesa Fleischmann, P, Barrios, H, Cervantesde, C. (2011). "Extended-spectrum ß-Lactamase-Producing Enterobacteriaceae Causing Nosocomial Infections in Mexico. A Retrospective and Multicenter Study". Archives Of Medical Research. 42(2):156-162. [doi:10.1016/j.arcmed.2011.02.004] | 21565630 |
2010 | Vinuesa, P. (2010). "multilocus Sequence Analysis and Bacterial Species Phylogeny Estimation". Molecular Phylogeny of Microorganisms. ():41-64. | |
2009 | Cummings, S, Gyaneshwar, P, Vinuesa, P, Farruggia, F, Andrews, M, Humphry, D, Elliott, G, Nelson, A, Orr, C, Pettitt, D, Shah, G, Santos, S, Krishnan, H, Odee, D, Moreira, F, Sprent, J, Young, J, James, E. (2009). "Nodulation of Sesbania species by Rhizobium (Agrobacterium) strain IRBG74 and other Rhizobia". Environmental Microbiology. 11(10):2510-2525. [doi:10.1111/j.1462-2920.2009.01975.x] | 19555380 |
2009 | Contreras-Moreira, B, Sachman-Ruiz, B, Figueroa-Palacios, I, Vinuesa, P. (2009). "primers4clades: A web server that uses phylogenetic trees to design lineage-specific PCR primers for metagenomic and diversity studies". Nucleic Acids Research. 37(SUPPL. 2):95-100. [doi:10.1093/nar/gkp377] | 19465390 |
2009 | Castellanos, M, Romero, D. (2009). "The extent of migration of the holliday junction is a crucial factor for gene conversion in Rhizobium etli". Journal Of Bacteriology. 191(15):4987-4995. [doi:10.1128/JB.00111-09] | 19502410 |
2009 | Martinez-Salazar, J, Salazar, E, Encarnacion, S, Ramirez-Romero, M, Rivera, J. (2009). "Role of the Extracytoplasmic Function Sigma Factor RpoE4 in Oxidative and Osmotic Stress Responses in Rhizobium etli". Journal Of Bacteriology. 191(13):4122-4132. [doi:10.1128/JB.01626-08] | 19376852 |
2009 | Martinez-Salazar, J, Sandoval-Calderon, M, Guo, X, Castillo-Ramirez, S, Reyes, A, Loza, M, Rivera, J, Alvarado-Affantranger, X, Sanchez, F, Gonzalez, V, Davila, G, Ramirez-Romero, M. (2009). "The Rhizobium etli RpoH1 and RpoH2 sigma factors are involved in different stress responses". MICROBIOLOGY-UK. 155(2):386-397. [doi:10.1099/mic.0.021428-0] | 19202087 |
2009 | Martinez-Salazar, J, Zuniga-Castillo, J, Romero, D. (2009). "Differential roles of proteins involved in migration of Holliday junctions on recombination and tolerance to DNA damaging agents in Rhizobium etli". Gene. 432(1-2):26-32. [doi:10.1016/j.gene.2008.11.009] | 19071199 |
2008 | Renteria, M, Gandhi, N, Vinuesa, P, Helmerhorst, E, Mancera, R. (2008). "A comparative structural bioinformatics analysis of the insulin receptor family ectodomain based on phylogenetic information". Plos One. 3(11):e3667-. [doi:10.1371/journal.pone.0003667] | 18989367 |
2008 | Vinuesa, P, Rojas-Jimenez, K, Contreras-Moreira, B, Mahna, S, Prasad, B, Moe, H, Selvaraju, S, Thierfelder, H, Werner, D. (2008). "multilocus Sequence Analysis for assessment of the biogeography and evolutionary genetics of four Bradyrhizobium species that nodulate soybeans on the asiatic continent". Applied And Environmental Microbiology. 74(22):6987-6996. [doi:10.1128/AEM.00875-08] | 18791003 |
2008 | Crossman, L, Castillo-Ramirez, S, McAnnula, C, Lozano, L, Vernikos, G, Acosta, J, Ghazoui, Z, Hernandez-Gonzalez, I, Meakin, G, Walker, A, Hynes, M, Young, J, Downie, J, Romero, D, Johnston, A, Davila, G, Parkhill, J, Gonzalez, V. (2008). "A common genomic framework for a diverse assembly of plasmids in the symbiotic nitrogen fixing bacteria". Plos One. 3(7):e2567-. [doi:10.1371/journal.pone.0002567] | 18596979 |
2008 | Sepulveda, E, Perez-Mendoza, D, Ramirez-Romero, M, Soto, M, Lopez-Lara, I, Geiger, O, Sanjuan, J, Brom, S, Romero, D. (2008). "Modulation of conjugative activity of rhizobial symbiotic plasmids by repression and transcriptional interference". FEBS JOURNAL. 275(1):49-49. | |
2008 | Sepulveda, E, Perez-Mendoza, D, Ramirez-Romero, M, Soto, M, Lopez-Lara, I, Geiger, O, Sanjuan, J, Brom, S, Romero, D. (2008). "Transcriptional interference and repression modulate the conjugative ability of the symbiotic plasmid of Rhizobium etli". Journal Of Bacteriology. 190(12):4189-4197. [doi:10.1128/JB.00041-08] | 18424522 |
2008 | Garcfa-de los Santos, A, Lopez, E, Cubillas, C, Noel, K, Brom, S, Romero, D. (2008). "Requirement of a plasmid-encoded catalase for survival of Rhizobium etli CFN42 in a polyphenol-rich environment". Applied And Environmental Microbiology. 74(8):2398-2403. [doi:10.1128/AEM.02457-07] | 18310436 |
2008 | Cerritos, R, Vinuesa, P, Eguiarte, L, Herrera-Estrella, L, Alcaraz-Peraza, L, Arvizu-Gomez, J, Olmedo, G, Ramirez, E, Siefert, J, Souza, V. (2008). "Bacillus coahuilensis sp. nov., a moderately halophilic species from a desiccation lagoon in the Cuatro Ciénegas Valley in Coahuila, Mexico". International Journal Of Systematic And Evolutionary Microbiology. 58(4):919-923. [doi:10.1099/ijs.0.64959-0] | 18398195 |
2007 | Sohlenkamp, C, Galindo-Lagunas, K, Guan, Z, Vinuesa, P, Robinson, S, Thomas-Oates, J, Raetz, C, Geiger, O. (2007). "The lipid lysyl-phosphatidylglycerol is present in membranes of Rhizobium tropici CIAT899 and confers increased resistance to polymyxin B under acidic growth conditions". Molecular Plant-Microbe Interactions. 20(11):1421-1430. [doi:10.1094/MPMI-20-11-1421] | 17977153 |
2007 | Granados Baeza, M, Gómez Hernández, N, Mora, Y, Delgado, M, Romero Camarena, D, Girard Cuesy, M. (2007). "Novel reiterated Fnr-type proteins control the production of the symbiotic terminal oxidase cbb3 in Rhizobium etli CFN42". Molecular Plant-Microbe Interactions. 20(10):1241-1249. [doi:10.1094/MPMI-20-10-1241] | 17918626 |
2007 | Romero, D, Sánchez-Arroyo, A. (2007). "Adding evidence to the Erdos-Faber-Lovász conjecture". Ars Combinatoria. 85():71-84. | |
2007 | Romero, D, Zertuche, F. (2007). "Number of different binary functions generated by NK -Kauffman networks and the emergence of genetic robustness". J MATH PHYS. 48(8):083506-. [doi:10.1063/1.2768747] | |
2007 | Ramirez-Trujillo, J, Encarnacion, S, Salazar, E, de los Santos, A, Dunn, M, Emerich, D, Calva, E, Hernandez-Lucas, I. (2007). "Functional characterization of the Sinorhizobium meliloti acetate metabolism genes aceA, SMc00767, and glcB". Journal Of Bacteriology. 189(16):5875-5884. [doi:10.1128/JB.00385-07] | 17526694 |
2007 | Pinero, S, Rivera, J, Romero, D, Cevallos, M, Martinez, A, Bolivar, F, Gosset, G. (2007). "Tyrosinase from Rhizobium etli is involved in nodulation efficiency and symbiosis-associated stress resistance". JOURNAL OF MOLECULAR MICROBIOLOGY AND BIOTECHNOLOGY. 13(1-3):35-44. [doi:10.1159/000103595] | 17693711 |
2007 | Poggio, S, Abreu-Goodger, C, Fabela, S, Osorio, A, Dreyfus, G, Vinuesa, P, Camarena, L. (2007). "A complete set of flagellar genes acquired by horizontal transfer coexists with the endogenous flagellar system in Rhodobacter sphaeroides". Journal Of Bacteriology. 189(8):3208-3216. [doi:10.1128/JB.01681-06] | 17293429 |
2007 | Brom, S, Garcia-De Los Santos, A, Romero, L. (2007). "Conjugative transfer of Rhizobium plasmids.". Plasmid. 57(2):220-220. | |
2007 | Top, E, Romero, D. (2007). "Evolution and ecology - Summary". Plasmid. 57(2):223-225. | |
2007 | Romero, D, Garcia-De Los Santos, A, Brom, S. (2007). "Essential plasmids in Rhizobium.". Plasmid. 57(2):227-227. | |
2007 | Sepulveda, E, Perez-Mendoza, D, Munoz, S, Ramirez-Romero, M, Soto, M, Cervantes, L, Herrera-Cervera, J, Lopez-Lara, I, Geiger, O, Sanuan, J, Brom, S, Romero, D. (2007). "Regulation of conjugal transfer of the Rhizobium etli Sym plasmid.". Plasmid. 57(2):220-221. | |
2007 | Silva Romero, C, Vinuesa Fleischmann, P. (2007). "Ecología evolutiva de bacterias y el concepto de especie: el caso de los rizobios". Ecología Molecular. ():351-392. | |
2006 | Albino, U, Saridakis, D, Ferreira, M, Hungria, M, Vinuesa, P, Andrade, G. (2006). "High diversity of diazotrophic bacteria associated with the carnivorous plant Drosera villosa var. villosa growing in oligotrophic habitats in Brazil". PLANT AND SOIL. 287(1-2):199-207. [doi:10.1007/s11104-006-9066-7] | |
2006 | Ormeño Orrillo, E, Vinuesa Fleischmann, P, Zuniga-Davila, D, Martínez Romero, M. (2006). "Molecular diversity of native bradyrhizobia isolated from Lima bean (Phaseolus lunatus L.) in Peru". Systematic And Applied Microbiology. 29(3):253-262. [doi:10.1016/j.syapm.2005.09.002] | 16564961 |
2006 | Silva Romero, C, Vinuesa Fleischmann, P, Martínez Romero, M. (2006). "Species delineation and biogeography of Rhizobia: Two case studies". Proceedings of the 12th International Congress on Molecular Plant-Microbe Interactions. 5():319-324. | |
2005 | Perez-Mendoza, D, Sepulveda, E, Pando, V, Munoz, S, Nogales, J, Olivares, J, Soto, M, Herrera-Cervera, J, Romero, D, Brom, S, Sanjuan, J. (2005). "Identification of the rctA gene, which is required for repression of conjugative transfer of rhizobial symbiotic megaplasmids". Journal Of Bacteriology. 187(21):7341-7350. [doi:10.1128/JB.187.21.7341-7350.2005] | 16237017 |
2005 | Silva Romero, C, Vinuesa Fleischmann, P, Eguiarte, L, Souza, V, Martínez Romero, M. (2005). "Evolutionary genetics and biogeographic structure of Rhizobium gallicum sensu lato, a widely distributed bacterial symbiont of diverse legumes". MOLECULAR ECOLOGY. 14(13):4033-4050. [doi:10.1111/j.1365-294X.2005.02721.x] | 16262857 |
2005 | Rojas-Jimenez, K, Sohlenkamp, C, Geiger, O, Martínez Romero, M, Werner, D, Vinuesa Fleischmann, P. (2005). "A CIC chloride channel homolog and ornithine-containing membrane lipids of Rhizobium tropici CIAT899 are involved in symbiotic efficiency and acid tolerance". Molecular Plant-Microbe Interactions. 18(11):1175-1185. [doi:10.1094/MPMI-18-1175] | 16353552 |
2005 | Vinuesa Fleischmann, P, Silva Romero, C, Lorite, M, Izaguirre-Mayoral, M, Bedmar, E, Martínez Romero, M. (2005). "Molecular systematics of Rhizobia based on maximum likelihood and Bayesian phylogenies inferred from rrs, atpD, recA and nifH sequences, and their use in the classification of Sesbania microsymbionts from Venezuelan wetlands". Systematic And Applied Microbiology. 28(8):702-716. [doi:10.1016/j.syapm.2005.05.007] | 16261860 |
2005 | Guillen-Navarro, K, Araiza, G, Garcia-de los Santos, A, Mora, Y, Dunn, M. (2005). "The Rhizobium etli bioMNY operon is involved in biotin transport". Fems Microbiology Letters. 250(2):209-219. [doi:10.1016/j.femsle.2005.07.020] | 16099603 |
2005 | Santoyo, G, Martinez-Salazar, J, Rodriguez, C, Romero, D. (2005). "Gene conversion tracts associated with crossovers in Rhizobium etli". Journal Of Bacteriology. 187(12):4116-4126. [doi:10.1128/JB.187.12.4116-4126.2005] | 15937174 |
2005 | Santoyo Pizano, G, Romero Camarena, D. (2005). "Gene conversion and concerted evolution in bacterial genomes". Fems Microbiology Reviews. 29(2):169-183. [doi:10.1016/j.femsre.2004.10.004] | 15808740 |
2005 | Romero, D, Zertuche, F. (2005). "Grasping the connectivity of random functional graphs". STUD SCI MATH HUNG. 42(1):1-9. [doi:10.1556/SScMath.42.2005.1.1] | |
2005 | Vinuesa Fleischmann, P, Leon-Barrios, M, Silva Romero, C, Willems, A, Jarabo-Lorenzo, A, Perez-Galdona, R, Werner, D, Martínez Romero, M. (2005). "Bradyrhizobium canariense sp. nov., an acid-tolerant endosymbiont that nodulates endemic genistoid legumes (Papilionoideae: Genisteae) from the Canary Islands, along with Bradyrhizobium japonicum bv. genistearum, Bradyrhizobium genospecies alpha and Bradyrhizobium genospecies beta". International Journal Of Systematic And Evolutionary Microbiology. 55(2):569-575. [doi:10.1099/ijs.0.63292-0] | 15774626 |
2005 | Shamseldin, A, Vinuesa, P, Thierfelder, H, Werner, D. (2005). "Rhizobium etli and Rhizobium gallicum nodulate Phaseolus vulgaris in Egyptian soils and display cultivar-dependent symbiotic efficiency". Symbiosis. 38(2):145-161. | |
2005 | Romero, D. (2005). "Revista Latinoamericana de Microbiologia: Message from the Editor in chief". Revista Latinoamericana De Microbiologia. 47(1-2):5-5. | |
2005 | Vinuesa Fleischmann, P, Silva Romero, C, Werner, D, Martínez Romero, M. (2005). "Population genetics and phylogenetic inference in bacterial molecular systematics: The roles of migration and recombination in Bradyrhizobium species cohesion and delineation". Molecular Phylogenetics And Evolution. 34(1):29-54. [doi:10.1016/j.ympev.2004.08.020] | 15579380 |
2004 | Zuniga-Castillo, J, Romero, D, Martinez-Salazar, J. (2004). "The recombination genes addAB are not restricted to gram-positive bacteria: Genetic analysis of the recombination initiation enzymes recF and addAB in Rhizobium etli". Journal Of Bacteriology. 186(23):7905-7913. [doi:10.1128/JB.186.23.7905-7913.2004] | 15547262 |
2004 | Pérez, J, Pazos, R, Frausto, J, Rodríguez, G, Romero, D, Cruz, L. (2004). "A statistical approach for algorithm selection". LECT NOTES COMPUT SC. 3059():417-431. [doi:10.1007/978-3-540-24838-5_31] | |
2004 | Brom Klanner, S, Girard Cuesy, M, Tun Garrido, C, García de los Santos, A, Bustos Arcos, V, González Zúñiga, V, Romero Camarena, D. (2004). "Transfer of the symbiotic plasmid of Rhizobium etli CFN42 requires cointegration with p42a, which may be mediated by site-specific recombination". Journal Of Bacteriology. 186(22):7538-7548. [doi:10.1128/JB.186.22.7538-7548.2004] | 15516565 |
2004 | Medrano Soto, L, Moreno Hagelsieb, G, Vinuesa Fleischmann, P, Christen, J, Collado Vides, P. (2004). "Successful lateral transfer requires codon usage compatibility between foreign genes and recipient genomes". MOLECULAR BIOLOGY AND EVOLUTION. 21(10):1884-1894. [doi:10.1093/molbev/msh202] | 15240837 |
2004 | Sepulveda, E, Perez-Mendoza, D, Munoz, S, Ramirez-Romero, M, Soto, M, Cervantes, L, Herrera-Cervera, J, Lopez-Lara, I, Geiger, O, Sanuan, J, Brom, S, Romero, D. (2004). "Identification of functional mob regions in Rhizobium etli: Evidence for self-transmissibility of the symbiotic plasmid pRetCFN42d". Journal Of Bacteriology. 186(17):5753-5761. [doi:10.1128/JB.186.17.5753-5761.2004] | 15317780 |
2004 | Vinuesa, P, Silva, C. (2004). "Species delineation and biogeography of symbiotic bacteria associated with cultivated and wild legumes". Biological Resources And Migration. ():143-155. | |
2003 | Pérez O., J, Pazos R., R, Romero, D, Santaolaya S., R, Rodriguez O., G, Sosa S., V. (2003). "Adaptive and scalable allocation of data-objects in the web". LECT NOTES COMPUT SC. 2667():134-143. [doi:10.1007/3-540-44839-x_15] | |
2003 | González Zúñiga, V, Bustos Arcos, V, Ramírez Romero, M, Medrano Soto, L, Salgado Osorio, H, Hernández González, I, Hernández Celis, J, Quintero Hernández, V, Moreno Hagelsieb, G, Girard Cuesy, M, Rodríguez Sánchez, O, Flores López, M, Cevallos Gaos, M, Collado Vides, P, Romero Camarena, D, Dávila Ramos, J. (2003). "The mosaic structure of the symbiotic plasmid of Rhizobium etli CFN42 and its relation to other symbiotic genome compartments.". Genome Biology. 4(6):R36-. [doi:10.1186/gb-2003-4-6-r36] | 12801410 |
2003 | Vargas, M, Encarnacion, S, Davalos, A, Reyes-Perez, A, Mora, Y, Garcia-de los Santos, A, Brom, S, Moral, J. (2003). "Only one catalase, katG, is detectable in Rhizobium etli, and is encoded along with the regulator OxyR on a plasmid replicon". MICROBIOLOGY-UK. 149(5):1165-1176. [doi:10.1099/mic.0.25909-0] | 12724378 |
2003 | Romero, D, Zertuche, F. (2003). "The asymptotic number of attractors in the random map model". JOURNAL OF PHYSICS A-MATHEMATICAL AND GENERAL. 36(13):3691-3700. [doi:10.1088/0305-4470/36/13/304] | |
2003 | Tun-Garrido, C, Bustos, P, Gonzalez, V, Brom, S. (2003). "Conjugative transfer of p42a from Rhizobium etli CFN42, which is required for mobilization of the symbiotic plasmid, is regulated by quorum sensing". Journal Of Bacteriology. 185(5):1681-1692. [doi:10.1128/JB.185.5.1681-1692.2003] | 12591886 |
2003 | Silva, C, Vinuesa, P, Eguiarte, L, Martinez-Romero, E, Souza, V. (2003). "Rhizobium etli and Rhizobium gallicum nodulate common bean (Phaseolus vulgaris) in a traditionally managed milpa plot in Mexico: Population genetics and biogeographic implications". Applied And Environmental Microbiology. 69(2):884-893. [doi:10.1128/AEM.69.2.884-893.2003] | 12571008 |
2003 | Vinuesa Fleischmann, P, Neumann-Silkow, F, Pacios-Bras, C, Spaink, H, Martínez Romero, M, Werner, D. (2003). "Genetic analysis of a pH-regulated operon from Rhizobium tropici CIAT899 involved in acid tolerance and nodulation competitiveness". Molecular Plant-Microbe Interactions. 16(2):159-168. [doi:10.1094/MPMI.2003.16.2.159] | 12575750 |
2003 | Jahn, O, Davila, G, Romero, D, Noel, K. (2003). "BacS: An abundant bacteroid protein in Rhizobium etli whose expression ex planta requires nifA". Molecular Plant-Microbe Interactions. 16(1):65-73. [doi:10.1094/MPMI.2003.16.1.65] | 12580283 |
2002 | Cevallos, M, Porta, H, Izquierdo, J, Tun-Garrido, C, Garcia-de-los-Santos, A, Davila, G, Brom, S. (2002). "Rhizobium etli CFN42 contains at least three plasmids of the repABC family: A structural and evolutionary analysis". Plasmid. 48(2):104-116. [doi:10.1016/S0147-619X(02)00119-1] | 12383728 |
2002 | Garcia-de los Santos, A, Morales, A, Baldoma, L, Clark, S, Brom, S, Yost, C, Hernandez-Lucas, I, Aguilar, J, Hynes, M. (2002). "The glcB locus of Rhizobium leguminosarum VF39 encodes an arabinose-inducible malate synthase". Canadian Journal Of Microbiology. 48(10):922-932. [doi:10.1139/w02-091] | 12489782 |
2002 | Ramírez Alfonsín, J, Romero, D. (2002). "Embeddability of the combinohedron". DISCRETE MATH. 254(1-3):473-483. [doi:10.1016/S0012-365X(01)00298-9] | |
2002 | Brom Klanner, S, Girard Cuesy, M, García de los Santos, A, Sanjuan-Pinilla, J, Olivares, J, Sanjuan, J. (2002). "Conservation of plasmid-encoded traits among bean-nodulating Rhizobium species". Applied And Environmental Microbiology. 68(5):2555-2561. [doi:10.1128/AEM.68.5.2555-2561.2002] | 11976134 |
2002 | Encarnacion, S, del Vargas, M, Dunn, M, Davalos, A, Mendoza, G, Mora, Y, Mora, J. (2002). "aniA regulates reserve polymer accumulation and global protein expression in Rhizobium etli". Journal Of Bacteriology. 184(8):2287-2295. [doi:10.1128/JB.184.8.2287-2295.2002] | 11914361 |
2002 | Falcon, L, Escobar-Briones, E, Romero, D. (2002). "Nitrogen fixation patterns displayed by cyanobacterial consortia in Alchichica crater-lake, Mexico". Hydrobiologia. 467(1-3):71-78. [doi:10.1023/A:1014984629985] | |
2001 | López, O, Morera, C, Miranda-Ríos, J, Girard Cuesy, M, Romero Camarena, D, Soberón Chávez, M. (2001). "Regulation of gene expression in response to oxygen in Rhizobium etli: Role of FnrN in fixNOQP expression and in symbiotic nitrogen fixation". Journal Of Bacteriology. 183(24):6999-7006. [doi:10.1128/JB.183.24.6999-7006.2001] | 11717256 |
2001 | Díaz-Leal, H, Martínez-Bernal, J, Romero, D. (2001). "Dimension of the fixed point set of a nilpotent endomorphism on the flag variety". BOL SOC MAT MEX. 7(1):23-33. | |
2000 | Girard Cuesy, M, Brom Klanner, S, Dávalos Rodríguez, A, López, O, Soberón Chávez, M, Romero Camarena, D. (2000). "Differential regulation of fixN-reiterated genes in Rhizobium etli by a novel fixL-fixK cascade". Molecular Plant-Microbe Interactions. 13(12):1283-1292. [doi:10.1094/MPMI.2000.13.12.1283] | 11106020 |
2000 | Flores, M, Mavingui, P, Perret, X, Broughton, W, Romero, D, Hernandez, G, Davila, G, Palacios, R. (2000). "Prediction, identification, and artificial selection of DNA rearrangements in Rhizobium: Toward a natural genomic design". PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 97(16):9138-9143. [doi:10.1073/pnas.97.16.9138] | 10922070 |
2000 | Brom, S, Garcia-de los Santos, A, Cervantes, L, Palacios, R, Romero, D. (2000). "In Rhizobium etli symbiotic plasmid transfer, nodulation competitivity and cellular growth require interaction among different replicons". Plasmid. 44(1):34-43. [doi:10.1006/plas.2000.1469] | 10873525 |
2000 | Reyes, J, Tabche, M, Morera, C, Girard Cuesy, M, Romero Camarena, D, Krol, E, Miranda, J, Soberón Chávez, M. (2000). "Expression pattern of Rhizobium etli ccmIEFH genes involved in c-type cytochrome maturation". Gene. 250(1-2):149-157. [doi:10.1016/S0378-1119(00)00176-1] | 10854788 |
2000 | Valencia-Morales, E, Romero, D. (2000). "Recombination enhancement by replication (RER) in Rhizobium etli". Genetics. 154(3):971-983. | 10757747 |
2000 | Martinez-Salazar, J, Romero, D. (2000). "Role of the ruvB gene in homologous and homeologous recombination in Rhizobium etli". Gene. 243(1-2):125-131. [doi:10.1016/S0378-1119(99)00548-X] | 10675620 |
1999 | Romero, D, Barrón, C, Gómez, S. (1999). "The optimal geometry of Lennard-Jones clusters: 148-309". COMPUT PHYS COMMUN. 123(1-3):87-96. [doi:10.1016/s0010-4655(99)00259-3] | |
1999 | Romero, D, Martinez-Salazar, J, Ortiz, E, Rodriguez, C, Valencia-Morales, E. (1999). "Repeated sequences in bacterial chromosomes and plasmids: A glimpse from sequenced genomes". Research In Microbiology. 150(9-10):735-743. [doi:10.1016/S0923-2508(99)00119-9] | 10673011 |
1999 | Wang, E, Roel, M, Garcia-de los Santos, A, Martinez-Romero, J, Cevallos, M, Martinez-Romero, E. (1999). "Rhizobium etli bv. mimosae, a novel biovar isolated from Mimosa affinis". INTERNATIONAL JOURNAL OF SYSTEMATIC BACTERIOLOGY. 49(4):1479-1491. [doi:10.1099/00207713-49-4-1479] | 10555329 |
1999 | Barrón, C, Gómez, S, Romero, D, Saavedra, A. (1999). "A genetic algorithm for Lennard-Jones atomic clusters". Applied Mathematics Letters. 12(7):85-90. [doi:10.1016/S0893-9659(99)00106-8] | |
1999 | Thieffry, D, Romero, D. (1999). "The modularity of biological regulatory networks". Biosystems. 50(1):49-59. [doi:10.1016/S0303-2647(98)00087-2] | 10235650 |
1999 | Brom Klanner, S, Romero Camarena, D. (1999). "Plasmid biology 98: international symposium on plasmid biology". Plasmid. 41(2):141-177. | 10087219 |
1999 | Corvera Poire, A, Prome, D, Prome, J, Martínez Romero, M, Romero Camarena, D. (1999). "The nolL gene from Rhizobium etli determines nodulation efficiency by mediating the acetylation of the fucosyl residue in the nodulation factor". Molecular Plant-Microbe Interactions. 12(3):236-246. [doi:10.1094/MPMI.1999.12.3.236] | 10065560 |
1998 | Rodriguez, C, Romero, D. (1998). "Multiple recombination events maintain sequence identity among members of the nitrogenase multigene family in Rhizobium etli". Genetics. 149(2):785-794. | 9611191 |
1998 | Mavingui, P, Laeremans, T, Flores, M, Romero, D, Martinez-Romero, E, Palacios, R. (1998). "Genes essential for nod factor production and nodulation are located on a symbiotic amplicon (AMPRtrCFN299pc60) in Rhizobium tropici". Journal Of Bacteriology. 180(11):2866-2874. [doi:10.1128/JB.180.11.2866-2874.1998] | 9603874 |
1997 | Romero Camarena, D, Palacios de la Lama, R. (1997). "Gene amplification and genomic plasticity in prokaryotes". Annual Review of Genetics. 31():91-111. [doi:10.1146/annurev.genet.31.1.91] | 9442891 |
1997 | MirandaRios, J, Morera, C, Taboada, H, Davalos, A, Encarnacion, S, Mora, J, Soberon, M. (1997). "Expression of thiamin biosynthetic genes (thiCOGE) and production of symbiotic terminal oxidase cbb(3), in Rhizobium etli". Journal Of Bacteriology. 179(22):6887-6893. [doi:10.1128/jb.179.22.6887-6893.1997] | 9371431 |
1997 | Barrón, C, Gómez, S, Romero, D. (1997). "Lower energy icosahedral atomic clusters with incomplete core". Applied Mathematics Letters. 10(5):25-28. [doi:10.1016/S0893-9659(97)00078-5] | |
1997 | GarciadelosSantos, A, Brom, S. (1997). "Characterization of two plasmid-borne lps beta loci of Rhizobium etli required for lipopolysaccharide synthesis and for optimal interaction with plants". Molecular Plant-Microbe Interactions. 10(7):891-902. [doi:10.1094/MPMI.1997.10.7.891] | 9304861 |
1997 | Mavingui Malonda, A, Flores López, M, Romero Camarena, D, Martínez Romero, M, Palacios de la Lama, R. (1997). "Generation of Rhizobium Strains with Improved Symbiotic Properties by Random Dna Amplification (RDA)". Nature Biotechnology. 15(6):564-569. [doi:10.1038/nbt0697-564] | 9181580 |
1997 | Romero, D, Sánchez-Flores, A. (1997). "Omnipotence in stretchable two-dimensional scaling". MATH SOC SCI. 33(1):1-21. [doi:10.1016/S0165-4896(96)00817-7] | |
1996 | Girard, L, Valderrama, B, Palacios, R, Romero, D, Davila, G. (1996). "Transcriptional activity of the symbiotic plasmid of Rhizobium etli is affected by different environmental conditions". MICROBIOLOGY-UK. 142(10):2847-2856. [doi:10.1099/13500872-142-10-2847] | |
1996 | Dunn, M, Encarnacion, S, Araiza, G, Vargas, M, Davalos, A, Peralta, H, Mora, Y, Mora, J. (1996). "Pyruvate carboxylase from Rhizobium etli: Mutant characterization, nucleotide sequence, and physiological role". Journal Of Bacteriology. 178(20):5960-5970. [doi:10.1128/jb.178.20.5960-5970.1996] | 8830693 |
1996 | Valderrama, B, Davalos, A, Girard, L, Morett, E, Mora, J. (1996). "Regulatory proteins and CIS-acting elements involved in the transcriptional control of Rhizobium etli reiterated nifH genes". Journal Of Bacteriology. 178(11):3119-3126. [doi:10.1128/jb.178.11.3119-3126.1996] | 8655489 |
1996 | Santos, A, Brom, S, Romero, D. (1996). "Rhizobium plasmids in bacteria-legume interactions". World Journal Of Microbiology & Biotechnology. 12(2):119-125. [doi:10.1007/BF00364676] | 24415159 |
1996 | Barrón, C, Gómez, S, Romero, D. (1996). "Archimedean polyhedron structure yields a lower energy atomic cluster". Applied Mathematics Letters. 9(5):75-78. [doi:10.1016/0893-9659(96)00076-6] | |
1996 | Romero, D, Martinez, L, Fionova, L. (1996). "Computer simulation of grain boundary spatial distribution in a three-dimensional polycrystal with cubic structure". Acta Mater. 44(1):391-402. [doi:10.1016/1359-6454(95)00142-X] | |
1995 | ROMERO, D, MARTINEZSALAZAR, J, GIRARD, L, BROM, S, DAVILA, G, PALACIOS, R, FLORES, M, RODRIGUEZ, C. (1995). "Discrete amplifiable regions (amplicons) in the symbiotic plasmid of Rhizobium etli CFN42". Journal Of Bacteriology. 177(4):973-980. [doi:10.1128/jb.177.4.973-980.1995] | 7860608 |
1994 | Garduño- Juárez, R, Romero, D. (1994). "Heuristic methods in conformational space search of peptides". THEOCHEM-J MOL STRUC. 308(C):115-123. [doi:10.1016/0166-1280(94)80097-9] | |
1993 | Flores López, M, Brom Klanner, S, Stepkowsky, T, Girard Cuesy, M, Dávila Ramos, J, Romero Camarena, D, Palacios de la Lama, R. (1993). "Gene amplification in Rhizobium: Identification and in vivo cloning of discrete amplifiable DNA regions (amplicons) from Rhizobium leguminosarum biovar phaseoli". PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 90(11):4932-4936. [doi:10.1073/pnas.90.11.4932] | 8506337 |
1992 | BROM, S, DELOSSANTOS, A, STEPKOWSKI, T, FLORES, M, DAVILA, G, ROMERO, D, PALACIOS, R. (1992). "DIFFERENT PLASMIDS OF Rhizobium-leguminosarum BV phaseoli ARE REQUIRED FOR OPTIMAL SYMBIOTIC PERFORMANCE". Journal Of Bacteriology. 174(16):5183-5189. [doi:10.1128/jb.174.16.5183-5189.1992] | 1644746 |
1992 | Morales, L, Garduñojuárez, R, Romero, D. (1992). "The multiple-minima problem in small peptides revisited. The threshold accepting approach". J BIOMOL STRUCT DYN. 9(5):951-957. [doi:10.1080/07391102.1992.10507969] | 1524708 |
1991 | GIRARD, M, FLORES, M, BROM, S, ROMERO, D, PALACIOS, R, DAVILA, G. (1991). "Structural complexity of the symbiotic plasmid of Rhizobium leguminosarum bv. phaseoli". Journal Of Bacteriology. 173(8):2411-2419. [doi:10.1128/jb.173.8.2411-2419.1991] | 2013564 |
1991 | MARTINEZSALAZAR, J, ROMERO, D, GIRARD, M, DAVILA, G. (1991). "Molecular cloning and characterization of the recA gene of Rhizobium phaseoli and construction of recA mutants". Journal Of Bacteriology. 173(10):3035-3040. [doi:10.1128/jb.173.10.3035-3040.1991] | 2022610 |
1991 | ROMERO, D, BROM, S, MARTINEZSALAZAR, J, GIRARD, M, PALACIOS, R, DAVILA, G. (1991). "Amplification and deletion of a nod-nif region in the symbiotic plasmid of Rhizobium phaseoli". Journal Of Bacteriology. 173(8):2435-2441. [doi:10.1128/jb.173.8.2435-2441.1991] | 2013567 |
1991 | BROM, S, DELOSSANTOS, A, DELOURDESGIRARD, M, DAVILA, G, PALACIOS, R, ROMERO, D. (1991). "High-frequency rearrangements in Rhizobium leguminosarum bv. phaseoli plasmids". Journal Of Bacteriology. 173(3):1344-1346. [doi:10.1128/jb.173.3.1344-1346.1991] | 1991727 |
1991 | VAZQUEZ, M, DAVALOS, A, DELASPENAS, A, SANCHEZ, F, QUINTO, C. (1991). "NOVEL ORGANIZATION OF THE COMMON NODULATION GENES IN Rhizobium-leguminosarum BV. phaseoli STRAINS". Journal Of Bacteriology. 173(3):1250-1258. [doi:10.1128/jb.173.3.1250-1258.1991] | 1991718 |
1991 | Morales, L, Garduñojuárez, R, Romero, D. (1991). "Applications of simulated annealing to the multiple-minima problem in small peptides". J BIOMOL STRUCT DYN. 8(4):721-735. [doi:10.1080/07391102.1991.10507841] | 2059338 |
1991 | ROMERO, D, BROM, S, MARTINEZSALAZAR, J, GIRARD, M, FLORES, M, DURAN, L, DELOSSANTOS, A, PALACIOS, R, DAVILA, G. (1991). "GEONOMIC INSTABILITY IN Rhizobium - FRIEND OR FOE". Advances In Molecular Genetics Of Plant-Microbe Interactions, Vol 1. 10():211-214. | |
1990 | Romero, D. (1990). "Easy transportation-like problems on K-dimensional arrays". J OPTIMIZ THEORY APP. 66(1):137-147. [doi:10.1007/BF00940537] | |
1990 | Romero, D, Sánchez-Flores, A. (1990). "Methods for the one-dimensional space allocation problem". COMPUT OPER RES. 17(5):465-473. [doi:10.1016/0305-0548(90)90051-8] | |
1990 | MARTINEZ, E, ROMERO, D, PALACIOS, R. (1990). "The Rhizobium Genome". CRITICAL REVIEWS IN PLANT SCIENCES. 9(1):59-93. [doi:10.1080/07352689009382282] | |
1988 | BROM, S, MARTINEZ, E, DAVILA, G, PALACIOS, R. (1988). "NARROW-HOST-RANGE AND BROAD-HOST-RANGE SYMBIOTIC PLASMIDS OF Rhizobium SPP STRAINS THAT NODULATE Phaseolus-VULGARIS". Applied And Environmental Microbiology. 54(5):1280-1283. [doi:10.1128/AEM.54.5.1280-1283.1988] | 16347637 |
1988 | MARTINEZ, E, FLORES, M, BROM, S, ROMERO, D, DAVILA, G, PALACIOS, R. (1988). "Rhizobium phaseoli: A molecular genetics view". PLANT AND SOIL. 108(1):179-184. [doi:10.1007/BF02370113] | |
1988 | FLORES, M, GONZALEZ, V, PARDO, M, Leija, A, MARTINEZ, E, ROMERO, D, Piñero, D, DAVILA, G, PALACIOS, R. (1988). "Genomic instability in Rhizobium phaseoli.". Journal Of Bacteriology. 170(3):1191-1196. [doi:10.1128/jb.170.3.1191-1196.1988] | 3343217 |
1988 | ROMERO, D, Singleton, P, SEGOVIA, L, MORETT, E, Bohlool, B, PALACIOS, R, DAVILA, G. (1988). "EFFECT OF NATURALLY-OCCURRING nif REITERATIONS ON SYMBIOTIC EFFECTIVENESS IN Rhizobium-phaseoli". Applied And Environmental Microbiology. 54(3):848-850. [doi:10.1128/AEM.54.3.848-850.1988] | 16347593 |
1987 | FLORES, M, GONZALEZ, V, BROM, S, MARTINEZ, E, PINERO, D, ROMERO, D, DAVILA, G, PALACIOS, R. (1987). "Reiterated DNA sequences in Rhizobium and Agrobacterium spp.". Journal Of Bacteriology. 169(12):5782-5788. [doi:10.1128/jb.169.12.5782-5788.1987] | 3450286 |
1983 | DAVILA, G, BROM, S, MORA, Y, PALACIOS, R, MORA, J. (1983). "GENETIC AND BIOCHEMICAL-CHARACTERIZATION OF GLUTAMINE-SYNTHETASE FROM NEUROSPORA-CRASSA GLUTAMINE AUXOTROPHS AND THEIR REVERTANTS". Journal Of Bacteriology. 156(3):993-1000. | 6139363 |