Sergio Manuel Encarnación Guevara

Functional Genomics of Prokaryotes Researcher

Full Professor

Academic history

Sergio Encarnación Guevara obtained a B.Sc. in Chemistry Biology and Parasitology, a M.Sc. in Parasitology, and a Ph.D. in Biomedical Research at the UNAM. Upon graduation he was postdoctoral fellow in the Department of Microbiology and Molecular Biology at Harvard University.
He has been part of the Center for Genomic Sciences (formerly the Research Center for Nitrogen Fixation) since 1988. He is a Professor in the area of Functional Genomics (Investigador Titular C), currently serves as Head of the Proteomics Laboratory at CCG and is National Scientist Level 3. His pioneer work contributed to the development the functional genomics in bacterial proteomics, transcriptomics and metabolomics.
He was trained in the laboratory of Frederick Neidhardt, who was a pioneer in proteomics. After completing his training, he initiated with his advisor, Dr. Jaime Mora, the first laboratory of proteomics founded in México. They published the first works in proteomics reported by a Mexican group. He also pioneered in transcriptomics by designing and building the first microarray of a complete genome in México (Rhizobium etli).

He currently has more than 70 papers in international peer-reviewed journals, as well as over 16 chapters in books. Dr. EncarnacióN-Guevara has presented conferences at the principal international congresses in his area and participated as a member of editorial and national and international scientific evaluation committees. He is also a founding member of the Mexican Genomics Society and founding member and member of the Board of Directors of the North American Metabolomics Society, and is currently President of the Mexican Proteomics Society.

He was very recently invited by the H-CPP of the Human Proteome Organization (HUPO) to lead and organize the Mexican team that is currently participating in the Human Proteome project with emphasis on the proteomic analysis of chromosome 19.
He has served UNAM as a member of different university councils and evaluating committees. Dr. EncarnacióN-Guevara has mentored several undergraduate and graduate students; some of his former students are posdocs or investigators in Mexico (UNAM, UAEM), Switzerland, Germany, Sweden, France, and Scotland.
Major research interests of his lab include cancer proteomics, tumoral dynamics, miRNAs, quantitative proteomics and posttranslational modifications of proteins, particularly phosphorylation and acetylation.

Links

Scopus

Telephone: (777) 3291899
Email: encarnac@ccg.unam.mx

Publications

YearPublicationPMID
2020Díaz-Zaragoza, M, Jiménez, L, Hernández, M, Hernández-Ávila, R, Navarro, L, Ochoa-Sánchez, A, Encarnación-Guevara, S, Ostoa-Saloma, P, Landa, A. (2020). "Protein expression profile of Taenia crassiceps cysticerci related to Th1- and Th2-type responses in the mouse cysticercosis model.". ACTA TROPICA. 212():105696-. [doi:10.1016/j.actatropica.2020.105696]32956635
2020Rebollar-Flores, J, Medina-Aparicio, L, Osio-Becerro, V, Villarreal, J, Mayo, S, Mendoza, B, Rodríguez-Gutierrez, S, Olvera, L, Dávila, S, Encarnación, S, Martínez-Batallar, A, Calva, E, Hernández-Lucas, I. (2020). "The Salmonella enterica Serovar Typhi ltrR Gene Encodes Two Proteins Whose Transcriptional Expression Is Upregulated by Alkaline pH and Repressed at Their Promoters and Coding Regions by H-NS and Lrp". Journal Of Bacteriology. 202(13):e00783-19-. [doi:10.1128/JB.00783-19]32284321
2020Taboada-Castro, H, Castro-Mondragón, J, Aguilar-Vera, A, Hernández-Álvarez, A, van Helden, J, Encarnación-Guevara, S. (2020). "RhizoBindingSites, a Database of DNA-Binding Motifs in Nitrogen-Fixing Bacteria Inferred Using a Footprint Discovery Approach.". Frontiers in Microbiology. 11():567471-. [doi:10.3389/fmicb.2020.567471]33250866
2020Rizo, J, Rogel, M, Guillén, D, Wacher, C, Martinez-Romero, E, Encarnación, S, Sánchez, S, Rodríguez-Sanoja, R. (2020). "Nitrogen Fixation in Pozol, a Traditional Fermented Beverage.". Applied And Environmental Microbiology. 86(16):1-15. [doi:10.1128/AEM.00588-20]32503911
2020Gomez-Caudillo, L, Ortega-Lozano, A, Martinez-Batallar, A, Rosas-Vargas, H, Minauro-Sanmiguel, F, Encarnacion-Guevara, S. (2020). "Principal component analysis on LC-MS/MS and 2DE-MALDI-TOF in glioblastoma cell lines reveals that mitochondria act as organelle sensors of the metabolic state in glioblastoma.". ONCOLOGY REPORTS. 44(2):661-673. [doi:10.3892/or.2020.7625]32468038
2019García-Venzor, A, Mandujano-Tinoco, E, Lizarraga, F, Zampedri, C, Krötzsch, E, Salgado, R, Dávila-Borja, V, Encarnación-Guevara, S, Melendez-Zajgla, J, Maldonado, V. (2019). "Microenvironment-regulated lncRNA-HAL is able to promote stemness in breast cancer cells". BIOCHIMICA ET BIOPHYSICA ACTA-MOLECULAR CELL RESEARCH. 1866(12):118523-118523. [doi:10.1016/j.bbamcr.2019.118523]31401107
2019Silva Gaona, O, Guzman Flores, J, Vargas Ortiz, K, Hernandez Ortiz, M, Ramirez Emiliano, J, Encarnacion Guevara, S, Perez Vazquez, V. (2019). "Curcumin as a regulator of protein expression in the liver of obese diabetic db/db mice". FEBS OPEN BIO. 9():406-406.
2019Taboada, H, Meneses, N, Dunn, M, Vargas-Lagunas, C, Buchs, N, Castro-Mondragón, J, Heller, M, Encarnación, S. (2019). "Proteins in the periplasmic space and outer membrane vesicles of Rhizobium etli CE3 grown in minimal medium are largely distinct and change with growth phase.". MICROBIOLOGY-SGM. 165(6):638-650. [doi:10.1099/mic.0.000720]30358529
2019Luisa Castrejon-Godinez, M, Laura Ortiz-Hernandez, M, Salazar, E, Encarnacion, S, Mussali-Galante, P, Tovar-Sanchez, E, Sanchez-Salinas, E, Rodriguez, A. (2019). "Transcriptional analysis reveals the metabolic state of Burkholderia zhejiangensis CEIB S4-3 during methyl parathion degradation". Peerj. 7():e6822-. [doi:10.7717/peerj.6822]31086743
2019Alonso-Bastida, R, Encarnación-Guevara, S. (2019). "Proteomic insights into lysine acetylation and the implications for medical research". EXPERT REVIEW OF PROTEOMICS. 16(1):1-3. [doi:10.1080/14789450.2019.1557050]30523736
2019Taboada, H, Dunn, M, Meneses, N, Vargas-Lagunas, C, Buchs, N, Andrade-Domínguez, A, Encarnación, S. (2019). "Qualitative changes in proteins contained in outer membrane vesicles produced by Rhizobium etli grown in the presence of the nod gene inducer naringenin.". Archives Of Microbiology. 201(9):1173-1194. [doi:10.1007/s00203-019-01682-4]31172251
2018Guevara-Luna, J, Alvarez-Fitz, P, Ríos-Leal, E, Acevedo-Quiroz, M, Encarnación-Guevara, S, Moreno-Godinez, M, Castellanos-Escamilla, M, Toribio-Jiménez, J, Romero-Ramírez, Y. (2018). "Biotransformation of benzo[a]pyrene by the thermophilic bacterium Bacillus licheniformis M2-7". World Journal Of Microbiology & Biotechnology. 34(7):88-. [doi:10.1007/s11274-018-2469-9]29886516
2018Toledo-Leyva, A, Cesar Villegas-Pineda, J, Encarnacion-Guevara, S, Gallardo-Rincon, D, Talamas-Rohana, P. (2018). "Effect of ovarian cancer ascites on SKOV-3 cells proteome: new proteins associated with aggressive phenotype in epithelial ovarian cancer". Proteome Science. 16(1):3-3. [doi:10.1186/s12953-018-0133-9]29456457
2018Fernández-Coto, D, Gil, J, Hernández, A, Herrera-Goepfert, R, Castro-Romero, I, Hernández-Márquez, E, Arenas-Linares, A, Calderon-Sosa, V, Sanchez-Aleman, M, Mendez-Tenorio, A, Encarnación-Guevara, S, Ayala, G. (2018). "Quantitative proteomics reveals proteins involved in the progression from non-cancerous lesions to gastric cancer". Journal Of Proteomics. 186():15-27. [doi:10.1016/j.jprot.2018.07.013]30048774
2018Aguilar, C, Martinez-Batallar, G, Flores, N, Moreno-Avitia, F, Encarnacion, S, Escalante, A, Bolivar, F. (2018). "Analysis of differentially upregulated proteins in ptsHIcrr(-) and rppH(-) mutants in Escherichia coli during an adaptive laboratory evolution experiment". Applied Microbiology And Biotechnology. 102(23):10193-10208. [doi:10.1007/s00253-018-9397-3]30284012
2018Paik, Y, Lane, L, Kawamura, T, Chen, Y, Cho, J, Labaer, J, Yoo, J, Domont, G, Corrales, F, Omenn, G, Archakov, A, Encarnación-Guevara, S, Lui, S, Salekdeh, G, Cho, J, Kim, C, Overall, C. (2018). "Launching the C-HPP neXt-CP50 Pilot Project for Functional Characterization of Identified Proteins with No Known Function". JOURNAL OF PROTEOME RESEARCH. 17(12):4042-4050. [doi:10.1021/acs.jproteome.8b00383]30269496
2017Gil J, Ramírez-Torres A, Chiappe D, Luna-Peñaloza J, Fernandez-Reyes FC, Arcos-Encarnación B, Contreras S, Encarnación-Guevara S. (2017). "Lysine acetylation stoichiometry and proteomics analyses reveal pathways regulated by sirtuin 1 in human cells". JOURNAL OF BIOLOGICAL CHEMISTRY. 292(44):18129-18144. [doi:10.1074/jbc.M117.784546]28893905
2017Meneses, N, Taboada, H, Dunn, M, Vargas, M, Buchs, N, Heller, M, Encarnación, S. (2017). "The naringenin-induced exoproteome of Rhizobium etli CE3". Archives Of Microbiology. 199(5):737-755. [doi:10.1007/s00203-017-1351-8]28255691
2017Hernandez-Vargas, M, Gil, J, Lozano, L, Pedraza-Escalona, M, Ortiz, E, Encarnacion-Guevara, S, Alagon, A, Corzo, G. (2017). "Proteomic and transcriptomic analysis of saliva components from the hematophagous reduviid Triatoma Pallidipennis". Journal Of Proteomics. 162():30-39. [doi:10.1016/j.jprot.2017.04.022]28442446
2017Patiño-Lopez G., Encarnación-Guevara S.. (2017). "Clinical Proteomics in Mexico: where do we stand?". Boletin Medico del Hospital Infantil de Mexico. 74(3):173-174. [doi:10.1016/j.bmhimx.2017.04.001]29382483
2017Encarnación-Guevara S.. (2017). "The dawn and the first twenty-five years of proteomics in Mexico: a personal chronicle". Boletin Medico del Hospital Infantil de Mexico. 74(3):208-211. [doi:10.1016/j.bmhimx.2017.03.006]29382488
2017Herrera Y., Contreras S., Hernández M., Álvarez L., Mora Y., Encarnación-Guevara S.. (2017). "Displacers improve the selectivity of phosphopeptide enrichment by metal oxide affinity chromatography". Boletin Medico del Hospital Infantil de Mexico. 74(3):200-207. [doi:10.1016/j.bmhimx.2017.03.008]29382487
2017Gil, J, Ramirez-Torres, A, Encarnacion-Guevara, S. (2017). "Lysine acetylation and cancer: A proteomics perspective". Journal Of Proteomics. 150():297-309. [doi:10.1016/j.jprot.2016.10.003]27746255
2017Vargas-Lagunas, C, Mora, Y, Diaz, R, Martinez-Batallar, G, Girard, L, Encarnacion, S, Peralta, H, Mora, J. (2017). "Overproduction of Sinorhizobium meliloti argC (N-acetyl-gamma-glutamyl phosphate reductase) promotes growth delay and inefficient nodules". Fems Microbiology Letters. 364(23):fnx233-. [doi:10.1093/femsle/fnx233]29121239
2016Diener C, Muñoz-Gonzalez F, Encarnación S, Resendis-Antonio O. (2016). "The space of enzyme regulation in HeLa cells can be inferred from its intracellular metabolome". SCIENTIFIC REPORTS. 6():28415-28415. [doi:10.1038/srep28415]27335086
2016Guzman-Flores, J, Flores-Perez, E, Hernandez-Ortiz, M, Lopez-Briones, S, Ramirez-Emiliano, J, Encarnacion-Guevara, S, Perez-Vazquez, V. (2016). "Comparative Proteomics of Liver of the Diabetic Obese db/db and Non-Obese or Diabetic Mice". Current Proteomics. 13(3):231-236. [doi:10.2174/1570164613666160722102430]
2016Moreno Castillo, B, Dunn, M, Guillen Navarro, K, Holguin Melendez, F, Hernandez Ortiz, M, Encarnacion Guevara, S, Huerta Palacios, G. (2016). "Antifungal performance of extracellular chitinases and culture supernatants of Streptomyces galilaeus CFFSUR-B12 against Mycosphaerella Fijiensis Morelet". World Journal Of Microbiology & Biotechnology. 32(3):1-12. [doi:10.1007/s11274-015-1993-0]26873555
2016Peralta H, Aguilar A, Díaz R, Mora Y, Martínez-Batallar G, Salazar E, Vargas-Lagunas C, Martínez E, Encarnación S, Girard L, Mora J. (2016). "Genomic studies of nitrogen-fixing rhizobial strains from Phaseolus vulgaris seeds and nodules". Bmc Genomics. 17(1):1-1. [doi:10.1186/s12864-016-3053-z]27601031
2016Yadira Lopez-Chavez, M, Guillen-Navarro, K, Bertolini, V, Encarnacion, S, Hernandez-Ortiz, M, Sanchez-Moreno, I, Damon, A. (2016). "Proteomic and morphometric study of the in vitro interaction between Oncidium Sphacelatum Lindl. (Orchidaceae) and Thanatephorus sp RG26 (Ceratobasidiaceae)". Mycorrhiza. 26(5):353-365. [doi:10.1007/s00572-015-0676-x]26732875
2016Santillán O, Ramírez-Romero MA, Lozano L, Checa A, Encarnación SM, Dávila G. (2016). "Region 4 of Rhizobium etli primary sigma factor (SigA) confers transcriptional laxity in Escherichia coli". Frontiers in Microbiology. 7(JUL):1078-1078. [doi:10.3389/fmicb.2016.01078]27468278
2016Reyes-Perez, A, del Carmen Vargas, M, Hernandez, M, Aguirre-von-Wobeser, E, Perez-Rueda, E, Encarnacion, S. (2016). "Transcriptomic analysis of the process of biofilm formation in Rhizobium etli CFN42". Archives Of Microbiology. 198(9):847-860. [doi:10.1007/s00203-016-1241-5]27226009
2016Alvarado-Delgado A, Perales Ortiz G, Tello-López ÁT, Encarnación S, Conde R, Martínez-Batallar ÁG, Moran-Francia K, Lanz-Mendoza H. (2016). "Infection with Plasmodium berghei ookinetes alters protein expression in the brain of Anopheles albimanus mosquitoes". PARASITES & VECTORS. 9(1):542-542. [doi:10.1186/s13071-016-1830-9]27724938
2014Garibay-Cerdenares, O, Hernández-Ramírez, V, Osorio-Trujillo, J, Hernández Ortiz, M, Gallardo-Rincón, D, Cantú de León, D, Encarnación Guevara, S, Villegas-Pineda, J, Talamas-Rohana, P. (2014). "Proteomic identification of fucosylated haptoglobin alpha isoforms in ascitic fluids and its localization in ovarian carcinoma tissues from Mexican patients". Journal Of Ovarian Research. 7(1):27-27. [doi:10.1186/1757-2215-7-27]24576319
2014Mora, Y, Diaz, R, Vargas-Lagunas, C, Peralta, H, Guerrero, G, Aguilar, A, Encarnacion, S, Girard, L, Mora, J. (2014). "Nitrogen-fixing rhizobial strains isolated from common bean seeds: Phylogeny, physiology, and genome analysis". Applied And Environmental Microbiology. 80(18):5644-5654. [doi:10.1128/AEM.01491-14]25002426
2014Villarreal, J, Becerra-Lobato, N, Rebollar-Flores, J, Medina-Aparicio, L, Carbajal-Gómez, E, Zavala-Garcia, M, Vázquez, A, Gutierrez-Ríos, R, Encarnación Guevara, S, Martínez Batallar, Á, Calva, E, Hernández-Lucas, I. (2014). "The Salmonella enterica serovar Typhi ltrR-ompR-ompC-ompF genes are involved in resistance to the bile salt sodium deoxycholate and in bacterial transformation". Molecular Microbiology. 92(5):1005-1024. [doi:10.1111/mmi.12610]24720747
2014Pérez-Vázquez, V, Guzmán-Flores, J, Mares-Alvarez, D, Hernández Ortiz, M, Macias-Cervantes, M, Ramírez-Emiliano, J, Encarnación Guevara, S. (2014). "Differential Proteomic Analysis of the Pancreas of Diabetic db/db Mice Reveals the Proteins Involved in the Development of Complications of Diabetes Mellitus". International Journal Of Molecular Sciences. 15(6):9579-9593. [doi:10.3390/ijms15069579]24886809
2014Andrade Domínguez, A, Salazar Bustamante, E, Vargas Lagunas, M, Kolter, R, Encarnación Guevara, S. (2014). "Eco-evolutionary feedbacks drive species interactions". ISME JOURNAL. 8(5):1041-1054. [doi:10.1038/ismej.2013.208]24304674
2014Cocotl-Yañez, M, Moreno, S, Encarnación Guevara, S, López-Pliego, L, Castañeda, M, Espín, G. (2014). "A small heat-shock protein (Hsp20) regulated by RpoS is essential for cyst desiccation resistance in Azotobacter Vinelandii". MICROBIOLOGY-SGM. 160(3):479-487. [doi:10.1099/mic.0.073353-0]24385478
2014Trejo-Hernandez, A, Andrade-Dominguez, A, Hernandez, M, Encarnacion, S. (2014). "Interspecies competition triggers virulence and mutability in Candida albicans-pseudomonas Aeruginosa mixed biofilms". ISME JOURNAL. 8(10):1974-1988. [doi:10.1038/ismej.2014.53]24739628
2013Higareda Almaraz, J, Valtierra Gutiérrez, I, Hernández Ortiz, M, Contreras Martínez, S, Hernádez, E, Encarnación Guevara, S. (2013). "Analysis and Prediction of Pathways in HeLa Cells by Integrating Biological Levels of Organization with Systems-Biology Approaches". Plos One. 8(6):UNSP e65433-. [doi:10.1371/journal.pone.0065433]23785426
2013de Luna, L, León, P, Encarnación Guevara, S, Guevara-García, A. (2013). "Chloroplast omics". Barh Delmya. ():-.
2013Ramírez Yáñez, M, Guillén, G, Fuentes Membreño, S, Iñiguez Rabago, L, Aparicio Fabre, R, Zamorano Sánchez, D, Encarnación Guevara, S, Panzeri, D, Castiglioni, B, Cremonesi, P, Strozzi, F, Stella, A, Girard Cuesy, M, Sparvoli, F, Hernández Delgado, G. (2013). "Transcript profiling of common bean nodules subjected to oxidative stress". Physiologia Plantarum. 149(3):389-407. [doi:10.1111/ppl.12040]23432573
2013Rodríguez-Cruz, M, Coral-Vázquez, R, Hernández-Stengele, G, Sánchez, R, Salazar Bustamante, E, Sánchez-Muñoz, F, Encarnación Guevara, S, Ramirez-Salcedo, J. (2013). "Identification of Putative Ortholog Gene Blocks Involved in Gestant and Lactating Mammary Gland Development: A Rodent Cross- Species Microarray Transcriptomics Approach". INTERNATIONAL JOURNAL OF GENOMICS. 2013():624681-624681. [doi:10.1155/2013/624681]24288657
2013Esparza-Garrido, R, Velazquez-Flores, M, Diegoperez-Ramírez, J, López-Aguilar, E, Siordia-Reyes, G, Hernández Ortiz, M, Martínez Batallar, Á, Encarnación Guevara, S, Salamanca-Gomez, F, Arenas-Aranda, D. (2013). "A proteomic approach of pediatric astrocytomas: MiRNAs and network insight". Journal Of Proteomics. 94():162-175. [doi:10.1016/j.jprot.2013.09.009]24060999
2012Resendis Antonio, O, Hernández Ortiz, M, Pérez-Tejada Domínguez, Y, Encarnación Guevara, S. (2012). "Functional Modules, Structural Topology, and Optimal Activity in Metabolic Networks". Plos Computational Biology. 8(10):1002720-. [doi:10.1371/journal.pcbi.1002720]23071431
2012Sánchez, D, Otero, L, Hernández Ortiz, M, Serra, A, Encarnación Guevara, S, Domenech, C, Lisa, A. (2012). "A pseudomonas Aeruginosa PA01 acetylcholinesterase is encoded by the PA4921 gene and belongs to the SGNH hydrolase family". Microbiological Research. 167(6):317-325. [doi:10.1016/j.micres.2011.11.005]22192836
2012Cancino-Rodezno, A, Lozano Aguirre Beltrán, L, Oppert, C, Castro, J, Lanz-Mendoza, H, Encarnación Guevara, S, Evans, A, Gill, S, Soberon, M, Jurat-Fuentes, J, Bravo, A. (2012). "Comparative proteomic analysis of Aedes Aegypti larval midgut after intoxication with Cry11Aa toxin from Bacillus thuringiensis". Plos One. 7(5):37034-. [doi:10.1371/journal.pone.0037034]22615881
2012Martínez-Gómez, K, Flores, N, Castañeda, H, Martínez Batallar, Á, Hernández-Chávez, G, Ramírez, O, Gosset, G, Encarnación Guevara, S, Bolivar, F. (2012). "New insights into Escherichia coli metabolism: carbon scavenging, acetate metabolism and carbon recycling responses during growth on glycerol". Microbial Cell Factories. 11():46-46. [doi:10.1186/1475-2859-11-46]22513097
2011Díaz Mendez, R, Vargas Lagunas, M, Villalobos López, M, Peralta Díaz, H, Pérez-Tejada Domínguez, Y, Encarnación Guevara, S, Girard Cuesy, M, Mora Celis, J. (2011). "argC orthologs from Rhizobiales show diverse profiles of transcriptional efficiency and functionality in Sinorhizobium meliloti". Journal Of Bacteriology. 193(2):460-472. [doi:10.1128/JB.01010-10]21075924
2011Resendis Antonio, O, Hernández Ortiz, M, Salazar Bustamante, E, Contreras Martínez, S, Martínez Batallar, Á, Pérez-Tejada Domínguez, Y, Encarnación Guevara, S. (2011). "Systems biology of bacterial nitrogen fixation: High-throughput technology and its integrative description with constraint-based modeling". Bmc Systems Biology. 5():120-120. [doi:10.1186/1752-0509-5-120]21801415
2011Higareda Almaraz, J, Enríquez Gasca, M, Hernández Ortiz, M, Resendis Antonio, O, Encarnación Guevara, S. (2011). "Proteomic patterns of cervical cancer cell lines, a network perspective". Bmc Systems Biology. 5():96-96. [doi:10.1186/1752-0509-5-96]21696634
2010Resendis-Antonio, O, Checa, A, Encarnacion, S. (2010). "Modeling Core Metabolism in Cancer Cells: Surveying the Topology Underlying the Warburg Effect". Plos One. 5(8):e12383-. [doi:10.1371/journal.pone.0012383]20811631
2010Salazar, E, Diaz-Mejia, J, Moreno-Hagelsieb, G, Martinez-Batallar, G, Mora, Y, Mora, J, Encarnacion, S. (2010). "Characterization of the nif A-RpoN regulon in Rhizobium etli in free life and in symbiosis with Phaseolus vulgaris". Applied And Environmental Microbiology. 76(13):4510-4520. [doi:10.1128/AEM.02007-09]20453139
2010Davila-Martinez, Y, Laura Ramos-Vega, A, Contreras-Martinez, S, Encarnacion, S, Geiger, O, Lopez-Lara, I. (2010). "SMc01553 is the sixth acyl carrier protein in Sinorhizobium meliloti 1021". MICROBIOLOGY-SGM. 156(1):230-239. [doi:10.1099/mic.0.033480-0]19797355
2010Meneses Moreno, N, Mendonza-Hernández, G, Encarnación Guevara, S. (2010). "The extracellular proteome of Rhizobium etli CE3 in exponential and stationary growth phase". Proteome Science. 8():51-51. [doi:10.1186/1477-5956-8-51]20942974
2009Reyes-Perez, A, Hernández Ortiz, M, Encarnacion, S. (2009). "Proteome analysis of the different stages of the Biofilm formation in Rhizobium etli". Clinical Proteomics. 5(SUPPLEMENT 1):107-107.
2009Martinez-Salazar, J, Salazar, E, Encarnacion, S, Ramirez-Romero, M, Rivera, J. (2009). "Role of the Extracytoplasmic Function Sigma Factor RpoE4 in Oxidative and Osmotic Stress Responses in Rhizobium etli". Journal Of Bacteriology. 191(13):4122-4132. [doi:10.1128/JB.01626-08]19376852
2009Laura Ramos-Vega, A, Davila-Martinez, Y, Sohlenkamp, C, Contreras-Martinez, S, Encarnacion, S, Geiger, O, Lopez-Lara, I. (2009). "SMb20651 is another acyl carrier protein from Sinorhizobium meliloti". MICROBIOLOGY-SGM. 155(1):257-267. [doi:10.1099/mic.0.022079-0]19118366
2009Rodriguez-Alvarez, M, Mendoza-Hernandez, G, Encarnacion, S, Jose Calva, J, Lopez-Vidal, Y. (2009). "Phenotypic differences between BCG vaccines at the proteome level". Tuberculosis. 89(2):126-135. [doi:10.1016/j.tube.2008.12.001]19231290
2009Balleza, E, Lopez-Bojorquez, L, Martinez-Antonio, A, Resendis-Antonio, O, Lozada-Chavez, I, Balderas-Martinez, Y, Encarnacion, S, Collado-Vides, J. (2009). "Regulation by transcription factors in bacteria: Beyond description". Fems Microbiology Reviews. 33(1):133-151. [doi:10.1111/j.1574-6976.2008.00145.x]19076632
2008Velazquez-Arellano, A, Cerevisiae, S, Elegans, C, Norvergicus, R, Ortega-Cuellar, D, Hernandez-Mendoza, A, Gonzalez-Alvarez, R, Encarnacion, S, Salazar, E, Uribe-Carvajal, S, Galvez-Mariscal, A. (2008). "Biotin Is a Major Regulator of Carbon Fluxes Genes in Eukaryotes". JOURNAL OF NUTRIGENETICS AND NUTRIGENOMICS. 1(6):294-294.
2008Vargas, M, Villalobos, M, Diaz, R, Flores, M, Contreras, S, Encarnacion, S, Mora, Y, Dunn, M, Girard, L, Mora, J. (2008). "COMPARATIVE ANALYSIS OF argC PROTEIN EXPRESSION IN Rhizobium SPECIES". Biological Nitrogen Fixation: Towards Poverty Alleviation Through Sustainable Agriculture. 42():239-240.
2008Velázquez-Arellano A., Encarnación S.. (2008). "Role of Proteomics in the Study of Nutrition". JOURNAL OF NUTRIGENETICS AND NUTRIGENOMICS. 1(1-2):55-58. [doi:10.1159/000109875]19918115
2008Mora Celis, J, Peralta Díaz, H, Encarnación Guevara, S. (2008). "Nitrógeno, fisiología y genómica". Descubrimientos y Aportaciones Científicas y Humanísticas Mexicanas en el Siglo XX. (0):642-651.
2008Encarnación Guevara, S, Salazar Bustamante, E, Martínez Batallar, Á, Hernández Ortiz, M, Reyes Pérez, A, Vargas Lagunas, M, Contreras Martínez, S, Elizalde Contreras, J, Noguez, R, Meneses, M, Bueno, O, Sánchez, R, Pérez-Tejada Domínguez, Y, Mora Celis, J. (2008). "Proteomic and Transcriptomic Approaches to Study Global Genome Expression in Rhizobium etli and Sinorhizobium meliloti". Current Plant Science and Biotechnology. Agriculture Biological Nitrogen Fixation, Sustainable Agriculture and the Environment. 42():231-232.
2008Taboada, H, Encarnacion, S, Vargas, M, Mora, Y, Miranda-Rios, J, Soberon, M, Mora, J. (2008). "Thiamine limitation determines the transition from aerobic to fermentative-like metabolism in Rhizobium etli CE3". Fems Microbiology Letters. 279(1):48-55. [doi:10.1111/j.1574-6968.2007.01006.x]18177306
2008Hernandez-Lucas, I, Gallego-Hernandez, A, Encarnacion, S, Fernandez-Mora, M, Martinez-Batallar, A, Salgado, H, Oropeza, R, Calva, E. (2008). "The LysR-type transcriptional regulator LeuO controls expression of several genes in Salmonella enterica serovar typhi". Journal Of Bacteriology. 190(5):1658-1670. [doi:10.1128/JB.01649-07]18156266
2008Rodriguez-Perez, M, Medina-Aunon, A, Encarnacion-Guevara, S, Bernal-Silvia, S, Barrera-Saldana, H, Pablo Albar-Ramirez, J. (2008). "In Silico analysis of protein neoplastic biomarkers for cervix and uterine cancer". Clinical and Translational Oncology. 10(10):604-617. [doi:10.1007/s12094-008-0261-2]18940741
2007Resendis Antonio, O, Reed, J, Encarnación Guevara, S, Collado Vides, P, Palsson, B. (2007). "Metabolic reconstruction and modeling of nitrogen fixation in Rhizobium etli". Plos Computational Biology. 3(10):1887-1895. [doi:10.1371/journal.pcbi.0030192]17922569
2007Ramirez-Trujillo, J, Encarnacion, S, Salazar, E, de los Santos, A, Dunn, M, Emerich, D, Calva, E, Hernandez-Lucas, I. (2007). "Functional characterization of the Sinorhizobium meliloti acetate metabolism genes aceA, SMc00767, and glcB". Journal Of Bacteriology. 189(16):5875-5884. [doi:10.1128/JB.00385-07]17526694
2006Batista, C, D'Suze, G, Gomez-Lagunas, F, Zamudio, F, Encamacion, S, Sevcik, C, Possani, L. (2006). "Proteomic analysis of Tityus discrepans scorpion venom and amino acid sequence of novel toxins". Proteomics. 6(12):3718-3727. [doi:10.1002/pmic.200500525]16705749
2006Encarnación Guevara, S, Salazar Bustamante, E, Martínez Batallar, Á, Hernández Ortiz, M, Reyes Pérez, A, Contreras Martínez, S, Vargas Lagunas, M, Domínguez Vidaña, R, Gonzaga Jáuregui, C, Pérez-Tejada Domínguez, Y, Rivero Zaragoza, M, Mora Celis, J. (2006). "GENÓMICA FUNCIONAL EN RIZOBIACEAS". Revista Latinoamericana de Microbiología. 48(2):135-141.
2006Encarnación-Guevara S.. (2006). "Genómica y genómica funcional en microbiología". Revista Latinoamericana de Microbiología. 48(2):131-132. 17578085
2005Vargas Lagunas, M, Encarnación Guevara, S, Girard Cuesy, M, Reyes Pérez, A, Pérez-Tejada Domínguez, Y, Mora Celis, J. (2005). "Characterization of the alternative protection programs against oxidative-stress in free life and simbiosis from Rhizobium etli". Current Plant Science and Biotechnology. Agriculture Biological Nitrogen Fixation, Sustainable Agriculture and the Environment. 41():331-.
2005Chavez-Zamora, J, Salazar, E, Encarnacion, S. (2005). "Global analysis of genome expression in Sinorhizobium meliloti strain 1021 using microarrays.". Biological Nitrogen Fixation, Sustainable Agriculture And The Environment. 41():141-141.
2005Chavéz-Zamora, J, Salazar Bustamante, E, Encarnación Guevara, S. (2005). "Global analisis of the genome expresion in Sinorhizobium meliloti strain 1021, using microarray". Current Plant Science and Biotechnology. Agriculture Biological Nitrogen Fixation, Sustainable Agriculture and the Environment. 41():331-.
2005Encarnacion, S, Hernandez, M, Martinez-Batallar, G, Contreras, S, Vargas, M, Mora, J. (2005). "Comparative proteomics using 2-D gel electrophoresis and mass spectrometry as tools to dissect stimulons and regulons in bacteria with sequenced or partially sequenced genomes". BIOLOGICAL PROCEDURES ONLINE. 7():117-135. [doi:10.1251/bpo110]16145578
2005Encarnación Guevara, S, Salazar Bustamante, E, Hernández Ortiz, M, Martínez Batallar, Á, García, J, Flores, H, Reyes Pérez, A, Vargas Lagunas, M, Contreras Martínez, S, Pérez-Tejada Domínguez, Y, Mora Celis, J. (2005). "Proteomic and transcriptomic approaches to study global genome expression in free-living and symbiotically-associated Rhizobium etli and Sinorhizobium meliloti". Current Plant Science and Biotechnology. Agriculture Biological Nitrogen Fixation, Sustainable Agriculture and the Environment. 41():142-.
2005Encarnación Guevara, S. (2005). "The dawn of functional genomics in nitrogen fixation Research". Genomes and Genomics of Nitrogen Fixing Organisms. ():143-163.
2005Guillen-Navarro, K, Encarnacion, S, Dunn, M. (2005). "Biotin biosynthesis, transport and utilization in Rhizobia". Fems Microbiology Letters. 246(2):159-165. [doi:10.1016/j.femsle.2005.04.020]15899401
2004Vargas, M, Encarnacin, S, Girard, M, Reyes, A, Mora, Y, Mora, J. (2004). "Physiological and proteome characterizations of oxidative-stress response in Rhizobium etli during free life and symbiosis with Phaseolus vulgaris.". MOLECULAR & CELLULAR PROTEOMICS. 3(10, S):160-160.
2004Encarnacion, S, Garcia, J, Hernandez, M, Vargas, M, Contreras, S, Mora, J. (2004). "Protein expression during biofilm formation in Rhizobium etli and Sinorhizobium meliloti". MOLECULAR & CELLULAR PROTEOMICS. 3(10, S):150-150.
2004Peralta, H, Mora, Y, Salazar, E, Encarnacion, S, Palacios, R, Mora, J. (2004). "Engineering the nifH promoter region and abolishing poly-ß -hydroxybutyrate accumulation in Rhizobium etli enhance nitrogen fixation in symbiosis with Phaseolus vulgaris". Applied And Environmental Microbiology. 70(6):3272-3281. [doi:10.1128/AEM.70.6.3272-3281.2004]15184121
2003Encarnacion, S, Guzman, Y, Dunn, M, Hernandez, M, Vargas, M, Mora, J. (2003). "Proteome analysis of aerobic and fermentative metabolism in Rhizobium etli CE3". Proteomics. 3(6):1077-1085. [doi:10.1002/pmic.200300427]12833533
2003Vargas, M, Encarnacion, S, Davalos, A, Reyes-Perez, A, Mora, Y, Garcia-de los Santos, A, Brom, S, Moral, J. (2003). "Only one catalase, katG, is detectable in Rhizobium etli, and is encoded along with the regulator OxyR on a plasmid replicon". MICROBIOLOGY-SGM. 149(5):1165-1176. [doi:10.1099/mic.0.25909-0]12724378
2002Dunn, M, Araiza, G, Encarnacion, S, del Vargas, M, Mora, J. (2002). "Effect of aniA (carbon flux regulator) and phaC (poly-ß-hydroxybutyrate synthase) mutations on pyruvate metabolism in Rhizobium etli". Journal Of Bacteriology. 184(8):2296-2299. [doi:10.1128/JB.184.8.2296-2299.2002]11914362
2002Encarnacion, S, del Vargas, M, Dunn, M, Davalos, A, Mendoza, G, Mora, Y, Mora, J. (2002). "aniA regulates reserve polymer accumulation and global protein expression in Rhizobium etli". Journal Of Bacteriology. 184(8):2287-2295. [doi:10.1128/JB.184.8.2287-2295.2002]11914361
2000Castillo, A, Taboada, H, Mendoza, A, Valderrama, B, Encarnacion, S, Mora, J. (2000). "Role of GOGAT in carbon and nitrogen partitioning in Rhizobium etli". MICROBIOLOGY-SGM. 146(7):1627-1637. [doi:10.1099/00221287-146-7-1627]10878127
1998Mandon, K, Michel-Reydellet, N, Encarnacion, S, Kaminski, P, Leija, A, Cevallos, M, Elmerich, C, Mora, J. (1998). "Poly-ß-hydroxybutyrate turnover in Azorhizobium caulinodans is required for growth and affects nifA expression". Journal Of Bacteriology. 180(19):5070-5076. [doi:10.1128/JB.180.19.5070-5076.1998]9748438
1998Encarnacion, S, Calderon, J, Gelbard, A, Cooper, A, Mora, J. (1998). "Glutamine biosynthesis and the utilization of succinate and glutamine by Rhizobium etli and Sinorhizobium meliloti". MICROBIOLOGY-SGM. 144(9):2629-2638. [doi:10.1099/00221287-144-9-2629]9782512
1997MirandaRios, J, Morera, C, Taboada, H, Davalos, A, Encarnacion, S, Mora, J, Soberon, M. (1997). "Expression of thiamin biosynthetic genes (thiCOGE) and production of symbiotic terminal oxidase cbb(3), in Rhizobium etli". Journal Of Bacteriology. 179(22):6887-6893. [doi:10.1128/jb.179.22.6887-6893.1997]9371431
1996Dunn, M, Encarnacion, S, Araiza, G, Vargas, M, Davalos, A, Peralta, H, Mora, Y, Mora, J. (1996). "Pyruvate carboxylase from Rhizobium etli: Mutant characterization, nucleotide sequence, and physiological role". Journal Of Bacteriology. 178(20):5960-5970. [doi:10.1128/jb.178.20.5960-5970.1996]8830693
1996Taboada, H, Encarnacion, S, Vargas, M, Mora, Y, MartinezRomero, E, Mora, J. (1996). "Glutamine synthetase II constitutes a novel taxonomic marker in Rhizobium etli and other Rhizobium species". INTERNATIONAL JOURNAL OF SYSTEMATIC BACTERIOLOGY. 46(2):485-491. [doi:10.1099/00207713-46-2-485]
1996Cevallos, M, Encarnacion, S, Leija, A, Mora, Y, Mora, J. (1996). "Genetic and physiological characterization of a Rhizobium etli mutant strain unable to synthesize poly-ß-hydroxybutyrate". Journal Of Bacteriology. 178(6):1646-1654. [doi:10.1128/jb.178.6.1646-1654.1996]8626293
1995ENCARNACION, S, DUNN, M, WILLMS, K, MORA, J. (1995). "Fermentative and aerobic metabolism in Rhizobium etli". Journal Of Bacteriology. 177(11):3058-3066. [doi:10.1128/jb.177.11.3058-3066.1995]7768801
1988Mora Celis, J, Bravo, A, Calderón, J, Encarnación Guevara, S, Hernández Delgado, G, Martínez, L, Narváez, V, Taboada Castro, H, Terrones, D. (1988). "Ex-planta nitrogen metabolismo in Rhizobium phaseoli". Molecular genetics of the plant-microbe interactions 1988, Proceedings of 4th International Symposium on Molecular Genetics of Plant-Microbe Interactions. ():130-134.