Publications

YearPublicationPMID
2021Ayra, L, Reyero-Saavedra, M, Isidra-Arellano, M, Lozano, L, Ramírez, M, Leija, A, Fuentes, S, Girard, L, Valdés-López, O, Hernández, G. (2021). "Control of the Rhizobia Nitrogen-Fixing Symbiosis by Common Bean MADS-Domain/AGL Transcription Factors.". Frontiers In Plant Science. 12():-. [doi:10.3389/fpls.2021.679463]34163511
2021Degli Esposti, M, Moya-Beltran, A, Quatrini, R, Hederstedt, L. (2021). "Respiratory Heme A-Containing Oxidases Originated in the Ancestors of Iron-Oxidizing Bacteria.". Frontiers in Microbiology. 12():-. [doi:10.3389/fmicb.2021.664216]34211444
2021Alvear, V, Mateos, M, Cortez, D, Tamborindeguy, C, Martinez-Romero, E. (2021). "Differential gene expression in a tripartite interaction: Drosophila , spiroplasma and parasitic wasps.". Peerj. 9():e11020-. [doi:10.7717/peerj.11020]33717711
2021Hernández-Oaxaca, D, López-Sánchez, R, Lozano, L, Wacher-Rodarte, C, Segovia, L, López Munguía, A. (2021). "Diversity of Weissella confusa in Pozol and Its Carbohydrate Metabolism.". Frontiers in Microbiology. 12():-. [doi:10.3389/fmicb.2021.629449]33815312
2021Medina-Aparicio, L, Rodriguez-Gutierrez, S, Rebollar-Flores, J, Martínez-Batallar, Á, Mendoza-Mejía, B, Aguirre-Partida, E, Vázquez, A, Encarnación, S, Calva, E, Hernández-Lucas, I. (2021). "The CRISPR-Cas System Is Involved in OmpR Genetic Regulation for Outer Membrane Protein Synthesis in Salmonella Typhi.". Frontiers in Microbiology. 12():-. [doi:10.3389/fmicb.2021.657404]33854491
2021Evans, B, Kumar, A, Castillo-Ramírez, S. (2021). "Editorial: Genomic Basis of Antibiotic Resistance and Virulence in Acinetobacter .". Frontiers in Microbiology. 12():-. [doi:10.3389/fmicb.2021.670975]33859632
2021Sánchez-González, G, Belak, Z, Lozano, L, Condé, R. (2021). "Probability of consolidation constrains novel serotype emergence in dengue fever virus.". Plos One. 16(4):e0248765-. [doi:10.1371/journal.pone.0248765]33819302
2021López-Leal, G, Reyes-Muñoz, A, Santamaria, R, Cevallos, M, Pérez-Monter, C, Castillo-Ramírez, S. (2021). "A novel vieuvirus from multidrug-resistant Acinetobacter baumannii.". ARCH VIROL. 166(5):1401-1408. [doi:10.1007/s00705-021-05010-4]33635432
2021Vences-Guzmán, M, Peña-Miller, R, Hidalgo-Aguilar, N, Vences-Guzmán, M, Guan, Z, Sohlenkamp, C. (2021). "Identification of the Flavobacterium johnsoniae cysteate-fatty acyl transferase required for capnine synthesis and for efficient gliding motility.". Environmental Microbiology. 23(5):2448-2460. [doi:10.1111/1462-2920.15445]33626217
2021Garibay-Cerdenares, O, Sánchez-Meza, L, Encarnación-Guevara, S, Hernández-Ortíz, M, Martínez-Batallar, G, Torres-Rojas, F, Mendoza-Catalán, M, Moral-Hernández, O, Leyva-Vázquez, M, Illades-Aguiar, B. (2021). "Effect of HPV 16 E6 oncoprotein variants on the alterations of the proteome of C33A cells". CANCER GENOM PROTEOM. 18(3):273-283. [doi:10.21873/CGP.20258]33893080
2021García-Hernández, M, Trujillo-Ortega, M, Alcaraz-Estrada, S, Lozano-Aguirre-beltrán, L, Sandoval-Jaime, C, Taboada-Ramírez, B, Sarmiento-Silva, R. (2021). "Molecular Detection and Characterization of Porcine Epidemic Diarrhea Virus and Porcine Aichivirus C Coinfection in México.". Viruses-Basel. 13(5):-. [doi:10.3390/v13050738]33922604
2021Reyes-cortes, J, Azaola-espinosa, A, Lozano-aguirre, L, Ponce-alquicira, E. (2021). "Physiological and Genomic Analysis of Bacillus pumilus UAMX Isolated from the Gastrointestinal Tract of Overweight Individuals.". Microorganisms. 9(5):-. [doi:10.3390/microorganisms9051076]34067853
2021Norte, A, Boyer, P, Castillo-Ramirez, S, Chvostác, M, Brahami, M, Rollins, R, Woudenberg, T, Didyk, Y, Derdakova, M, Núncio, M, de Carvalho, I, Margos, G, Fingerle, V. (2021). "The Population Structure of Borrelia lusitaniae Is Reflected by a Population Division of Its Ixodes Vector.". Microorganisms. 9(5):-. [doi:10.3390/microorganisms9050933]33925391
2021Batista-Oliveira, J, Formey, D, Torres, M, Aragón, W, Romero-Contreras, Y, Maruri-López, I, Tromas, A, Schwan-Estrada, K, Serrano, M. (2021). "Gadolinium Protects Arabidopsis thaliana against Botrytis cinerea through the Activation of JA/ET-Induced Defense Responses.". INT J MOL SCI. 22(9):-. [doi:10.3390/ijms22094938]34066536
2021Matus-Acuña, V, Caballero-Flores, G, Martínez-Romero, E. (2021). "The influence of maize genotype on the rhizosphere eukaryotic community.". Fems Microbiology Ecology. 97(6):-. [doi:10.1093/femsec/fiab066]33930111
2021Soto, M, Lopez-Lara, I, Geiger, O, Romero-Puertas, M, van Dillewijn, P. (2021). "Rhizobial Volatiles: Potential New Players in the Complex Interkingdom Signaling With Legumes.". Frontiers In Plant Science. 12():-. [doi:10.3389/fpls.2021.698912]34239533
2021Sachman-Ruiz, B, Lozano, L, Lira, J, Martínez, G, Rojas, C, Antonio Álvarez, J, Figueroa, J. (2021). "A Comparative Genomic Study of Attenuated and Virulent Strains of Babesia bigemina .". Pathogens (Basel, Switzerland). 10(3):-. [doi:10.3390/pathogens10030318]33800466
2021Sohlenkamp, C. (2021). "Crossing the lipid divide.". JOURNAL OF BIOLOGICAL CHEMISTRY. 297(1):-. [doi:10.1016/j.jbc.2021.100859]34097872
2021Escorcia-Rodríguez, J, Tauch, A, Freyre-González, J. (2021). "Corynebacterium glutamicum Regulation beyond Transcription: Organizing Principles and Reconstruction of an Extended Regulatory Network Incorporating Regulations Mediated by Small RNA and Protein-Protein Interactions.". Microorganisms. 9(7):-. [doi:10.3390/microorganisms9071395]34203422
2021Van Cauwenberghe, J, Santamaría, R, Bustos, P, Juárez, S, Ducci, M, Figueroa Fleming, T, Etcheverry, A, González, V. (2021). "Spatial patterns in phage-Rhizobium coevolutionary interactions across regions of common bean domestication.". ISME JOURNAL. 15(7):2092-2106. [doi:10.1038/s41396-021-00907-z]33558688
2021Camacho-Hernández, D, Nieto-Caballero, V, León-Burguete, J, Freyre-González, J. (2021). "Partition Quantitative Assessment (PQA): A Quantitative Methodology to Assess the Embedded Noise in Clustered Omics and Systems Biology Data". Applied Sciences. 11(13):5999-. [doi:10.3390/app11135999]
2021Geiger, O, Sohlenkamp, C, Vera-Cruz, D, Medeot, D, Martínez-Aguilar, L, Sahonero-Canavesi, D, Weidner, S, Pühler, A, López-Lara, I. (2021). "ExoS/ChvI Two-Component Signal-Transduction System Activated in the Absence of Bacterial Phosphatidylcholine.". Frontiers In Plant Science. 12():-. [doi:10.3389/fpls.2021.678976]34367203
2021Keseler, I, Gama-Castro, S, Mackie, A, Billington, R, Bonavides-Martínez, C, Caspi, R, Kothari, A, Krummenacker, M, Midford, P, Muñiz-Rascado, L, Ong, W, Paley, S, Santos-Zavaleta, A, Subhraveti, P, Tierrafría, V, Wolfe, A, Collado-Vides, J, Paulsen, I, Karp, P. (2021). "The EcoCyc Database in 2021.". Frontiers in Microbiology. 12():-. [doi:10.3389/fmicb.2021.711077]34394059
2021Velázquez-Sánchez, C, Vences-Guzmán, M, Moreno, S, Tinoco-Valencia, R, Espín, G, Guzmán, J, Sahonero-Canavesi, D, Sohlenkamp, C, Segura, D. (2021). "PsrA positively regulates the unsaturated fatty acid synthesis operon fabAB in Azotobacter Vinelandii.". Microbiological Research. 249():-. [doi:10.1016/j.micres.2021.126775]33964629
2021Aragón-Aranda, B, Palacios-Chaves, L, Salvador-Bescós, M, de Miguel, M, Muñoz, P, Vences-Guzmán, M, Zúñiga-Ripa, A, Lázaro-Antón, L, Sohlenkamp, C, Moriyón, I, Iriarte, M, Conde-Álvarez, R. (2021). "The Phospholipid N -Methyltransferase and Phosphatidylcholine Synthase Pathways and the ChoXWV Choline Uptake System Involved in Phosphatidylcholine Synthesis Are Widely Conserved in Most, but Not All Brucella Species.". Frontiers in Microbiology. 12():-. [doi:10.3389/fmicb.2021.614243]34421831
2021López-Chávez, M, Alvarez-Legorreta, T, Infante-Mata, D, Dunn, M, Guillén-Navarro, K. (2021). "Glyphosate-remediation potential of selected plant species in artificial wetlands". SCIENCE OF THE TOTAL ENVIRONMENT. 781():146812-. [doi:10.1016/j.scitotenv.2021.146812]
2021Montes-Carreto, L, Aguirre-Noyola, J, Solís-García, I, Ortega, J, Martinez-Romero, E, Guerrero, J. (2021). "Diverse methanogens, bacteria and tannase genes in the feces of the endangered volcano rabbit ( Romerolagus diazi) .". Peerj. 9():e11942-. [doi:10.7717/peerj.11942]34458021
2021Vera-Ponce León, A, Dominguez-Mirazo, M, Bustamante-Brito, R, Higareda-Alvear, V, Rosenblueth, M, Martínez-Romero, E. (2021). "Functional genomics of a spiroplasma associated with the carmine cochineals Dactylopius coccus and Dactylopius opuntiae.". Bmc Genomics. 22(1):-. [doi:10.1186/s12864-021-07540-2]33823812
2021Alonso-del Valle, A, León-Sampedro, R, Rodríguez-Beltrán, J, DelaFuente, J, Hernández-García, M, Ruiz-Garbajosa, P, Cantón, R, Peña-Miller, R, San Millán, A. (2021). "Variability of plasmid fitness effects contributes to plasmid persistence in bacterial communities.". Nature Communications. 12(1):-. [doi:10.1038/s41467-021-22849-y]33976161
2021Leifer, I, Sánchez-Pérez, M, Ishida, C, Makse, H. (2021). "Predicting synchronized gene coexpression patterns from fibration symmetries in gene regulatory networks in bacteria.". Bmc Bioinformatics. 22(1):-. [doi:10.1186/s12859-021-04213-5]34238210
2021Vichi, J, Salazar, E, Jacinto, V, Rodriguez, L, Grande, R, Dantán-González, E, Morett, E, Hernández-Mendoza, A. (2021). "High-throughput transcriptome sequencing and comparative analysis of Escherichia coli and Schizosaccharomyces pombe in respiratory and fermentative growth.". Plos One. 16(3):e0248513-. [doi:10.1371/journal.pone.0248513]33730068
2021Martínez-García, S, Peralta, H, Betanzos-Cabrera, G, Chavez-Galan, L, Rodríguez-Martínez, S, Cancino-Diaz, M, Cancino-Diaz, J. (2021). "Proteomic comparison of biofilm vs. planktonic Staphylococcus epidermidis cells suggests key metabolic differences between these conditions.". Research In Microbiology. 172(2):-. [doi:10.1016/j.resmic.2020.103796]33412274
2021Ángel Martín-Rodríguez, J, Ariani, A, Leija, A, Elizondo, A, Fuentes, S, Ramirez, M, Gepts, P, Hernández, G, Formey, D. (2021). "Phaseolus vulgaris MIR1511 genotypic variations differentially regulate plant tolerance to aluminum toxicity.". PLANT JOURNAL. 105(6):1521-1533. [doi:10.1111/tpj.15129]33300202
2021Álvarez-Gómez, T, Ramírez-Trujillo, J, Ramírez-Yáñez, M, Suárez-Rodríguez, R. (2021). "Overexpression of SlERF3b and SlERF5 in transgenic tomato alters fruit size, number of seeds and promotes early flowering, tolerance to abiotic stress and resistance to Botrytis cinerea infection". ANN APPL BIOL. ():-. [doi:10.1111/aab.12712]
2021León-Buitimea, A, Morones-Ramírez, J, Yang, J, Peña-Miller, R. (2021). "Editorial: Facing the Upcoming of Multidrug-Resistant and Extensively Drug-Resistant Bacteria: Novel Antimicrobial Therapies (NATs).". Frontiers in bioengineering and biotechnology. 9():-. [doi:10.3389/fbioe.2021.636278]33732690
2021Youseif, S, Abd El-Megeed, F, Mohamed, A, Ageez, A, Veliz, E, Martínez-Romero, E. (2021). "Diverse Rhizobium strains isolated from root nodules of Trifolium alexandrinum in Egypt and symbiovars.". Systematic And Applied Microbiology. 44(1):-. [doi:10.1016/j.syapm.2020.126156]33232849
2021Hernandez-Beltran, J, Rodríguez-Beltrán, J, Millán, A, Peña-Miller, R, Fuentes-Hernández, A. (2021). "Quantifying plasmid dynamics using single-cell microfluidics and image bioinformatics.". Plasmid. 113():-. [doi:10.1016/j.plasmid.2020.102517]32535165
2021Brom, S, Grohman, E, Llosa, M. (2021). "Early Career Researcher (ECR)". Plasmid. 113():102526-. [doi:10.1016/j.plasmid.2020.102526]32750387
2021Mendoza-Ramos, J, Talavera-Mendoza, O, Lopezaraiza-Mikel, M, Salgado-Souto, S, Sayago-Lorenzana, R, Ruiz, J, Sampedro-Rosas, L, Rosas-Acevedo, J, Aguirre-Noyola, J. (2021). "Biomonitoring and Sourcing Toxic Elements Using Vascular Epiphytes of the Tillandsia Genus in the Mining Region of Taxco de Alarcon, Guerrero, Southern Mexico". WATER AIR AND SOIL POLLUTION. 232(1):9-. [doi:10.1007/s11270-020-04961-9]
2021Coronado-Partida, L, Serrano, M, González-Estrada, R, Gutiérrez-Martínez, P. (2021). "Application of GRAS compounds to control soft rot in jackfruit (Artocarpus heterophyllus L.) caused by Rhizopus stolonifer". TIP Revista Especializada en Ciencias Químico-Biológicas. 24():1-7. [doi:10.22201/fesz.23958723e.2021.327]
2021Córdoba-Castro, L, Salgado-Morales, R, Torres, M, Martínez-Aguilar, L, Lozano, L, Vences-Guzmán, M, Guan, Z, Dantán-González, E, Serrano, M, Sohlenkamp, C. (2021). "Ornithine Lipids in Burkholderia spp. Pathogenicity.". Frontiers in molecular biosciences. 7():-. [doi:10.3389/fmolb.2020.610932]33469548
2021Cazares D, Cazares A, Figueroa W, Guarneros G, Edwards RA, Vinuesa P. (2021). "A Novel Group of Promiscuous Podophages Infecting Diverse Gammaproteobacteria from River Communities Exhibits Dynamic Intergenus Host Adaptation.". mSystems. 6(1):-. [doi:10.1128/mSystems.00773-20]33531404
2021Castellani, L, Luchetti, A, Nilsson, J, Pérez-Giménez, J, Wegener, C, Schlüter, A, Pühler, A, Lagares, A, Brom, S, Pistorio, M, Niehaus, K, Torres Tejerizo, G. (2021). "Exopolysaccharide Characterization of Rhizobium Favelukesii LPU83 and Its Role in the Symbiosis With Alfalfa.". Frontiers In Plant Science. 12():-. [doi:10.3389/fpls.2021.642576]33643369
2020Carballo-Ontiveros, M, Cazares, A, Vinuesa, P, Kameyama, L, Guarneros, G. (2020). "The Concerted Action of Two B3-Like Prophage Genes Excludes Superinfecting Bacteriophages by Blocking DNA Entry into pseudomonas Aeruginosa". JOURNAL OF VIROLOGY. 94(15):e00953-20-. [doi:10.1128/JVI.00953-20]32461312
2020Cabañas, N, Becerra, A, Romero, D, Govezensky, T, Espinosa-Aguirre, J, Camacho-Carranza, R. (2020). "Repetitive DNA profile of the amphibian mitogenome.". Bmc Bioinformatics. 21(1):197-. [doi:10.1186/s12859-020-3532-8]32429835
2020Bañuelos-Vazquez, L, Cazares, D, Rodríguez, S, Cervantes-De La Luz, L, Sánchez-López, R, Castellani, L, Tejerizo, G, Brom, S. (2020). "Transfer of the Symbiotic Plasmid of Rhizobium etli CFN42 to Endophytic Bacteria Inside Nodules.". Frontiers in Microbiology. 11():1752-. [doi:10.3389/fmicb.2020.01752]32849381
2020Rodríguez-Beltrán, J, Sørum, V, Toll-Riera, M, de la Vega, C, Peña-Miller, R, Millán, Á. (2020). "Genetic dominance governs the evolution and spread of mobile genetic elements in bacteria.". PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 117(27):15755-15762. [doi:10.1073/pnas.2001240117]32571917
2020Cevallos, M, Guerrero, G, Ríos, S, Arroyo, A, Villalobos, M, Porta, H. (2020). "The mitogenome of Pseudocrossidium replicatum, a desiccation-tolerant moss". MITOCHONDRIAL DNA PART B-RESOURCES. 5(3):2339-2341. [doi:10.1080/23802359.2020.1774436]33457783
2020Villaseñor-Altamirano AB, Moretto M, Maldonado M, Zayas-Del Moral A, Munguía-Reyes A, Romero Y, García-Sotelo JS, Aguilar LA, Aldana-Assad O, Engelen K, Selman M, Collado-Vides J, Balderas-Martínez YI, Medina-Rivera A. (2020). "PulmonDB: a curated lung disease gene expression database.". SCIENTIFIC REPORTS. 10(1):514-514. [doi:10.1038/s41598-019-56339-5]31949184
2020Becerra-Rivera, V, Arteaga, A, Leija, A, Hernández, G, Dunn, M. (2020). "Polyamines produced by Sinorhizobium meliloti Rm8530 contribute to symbiotically relevant phenotypes ex planta and to nodulation efficiency on alfalfa.". MICROBIOLOGY-SGM. 166(3):278-287. [doi:10.1099/mic.0.000886]31935179
2020Barrios-Villa, E, Martínez de la Peña, C, Lozano-Zaraín, P, Cevallos, M, Torres, C, Torres, A, Rocha-Gracia, R. (2020). "Comparative genomics of a subset of Adherent/Invasive Escherichia coli strains isolated from individuals without inflammatory bowel disease.". Genomics. 112(2):1813-1820. [doi:10.1016/j.ygeno.2019.10.013]31689478
2020Pech-Canul, Á, Rivera-Hernández, G, Nogales, J, Geiger, O, Soto, M, López-Lara, I. (2020). "Role of Sinorhizobium meliloti and Escherichia coli Long-Chain Acyl-CoA Synthetase FadD in Long-Term Survival". Microorganisms. 8(4):470-. [doi:10.3390/microorganisms8040470]32225039
2020Ferruz N, Lobos F, Lemm D, Toledo-Patino S, Farías-Rico JA, Schmidt S, Höcker B. (2020). "Identification and Analysis of Natural Building Blocks for Evolution-Guided Fragment-Based Protein Design.". Journal Of Molecular Biology. 432(13):3898-3914. [doi:10.1016/j.jmb.2020.04.013]32330481
2020Narváez-Barragán DA, Tovar-Herrera OE, Torres, M, Rodríguez M, Humphris S, Toth IK, Segovia L, Serrano M, Martínez-Anaya C. (2020). "Expansin-like Exl1 from Pectobacterium is a virulence factor required for host infection, and induces a defence plant response involving ROS, and jasmonate, ethylene and salicylic acid signalling pathways in Arabidopsis thaliana.". SCIENTIFIC REPORTS. 10(1):7747-7747. [doi:10.1038/s41598-020-64529-9]32385404
2020Sanjuan, J, Delgado, M, Girard, L. (2020). "Editorial: Microbial Control of the Nitrogen Cycle.". Frontiers in Microbiology. 11():950-. [doi:10.3389/fmicb.2020.00950]32477318
2020Gutiérrez-Guerrero, Y, Ibarra-Laclette, E, Martínez Del Río, C, Barrera-Redondo, J, Rebollar, E, Ortega, J, León-Paniagua, L, Urrutia, A, Aguirre-Planter, E, Eguiarte, L. (2020). "Genomic consequences of dietary diversification and parallel evolution due to nectarivory in leaf-nosed bats.". GigaScience. 9(6):giaa059-. [doi:10.1093/gigascience/giaa059]32510151
2020Castro-Jaimes, S, Bello-López, E, Velázquez-Acosta, C, Volkow-Fernández, P, Lozano-Zarain, P, Castillo-Ramírez, S, Cevallos, M. (2020). "Chromosome Architecture and Gene Content of the Emergent Pathogen Acinetobacter haemolyticus .". Frontiers in Microbiology. 11():926-. [doi:10.3389/fmicb.2020.00926]32670207
2020Giner-Lamia J, Vinuesa P, Betancor L, Silva C, Bisio J, Soleto L, Chabalgoity JA, Puente JL, Salmonella CYTED Network, García-Del Portillo F. (2020). "Correction to: Genome analysis of Salmonella enterica subsp. diarizonae isolates from invasive human infections reveals enrichment of virulence-related functions in lineage ST1256.". Bmc Genomics. 21(1):373-373. [doi:10.1186/s12864-020-06781-x]32456693
2020Rebollar, E, Martínez-Ugalde, E, Orta, A. (2020). "The Amphibian Skin Microbiome and Its Protective Role Against Chytridiomycosis". Herpetologica. 76(2):167-177. [doi:10.1655/0018-0831-76.2.167]
2020Singh, M, De Silva, P, Al-Saadi, Y, Switala, J, Loewen, P, Hausner, G, Chen, W, Hernandez, I, Castillo-Ramirez, S, Kumar, A. (2020). "Characterization of extremely drug-resistant and hypervirulent Acinetobacter baumannii ab030". ANTIBIOTICS-BASEL. 9(6):328-. [doi:10.3390/antibiotics9060328]32560407
2020Cornejo-Páramo, P, Dissanayake, D, Lira-Noriega, A, Martínez-Pacheco, M, Acosta, A, Ramírez-Suástegui, C, Méndez-de-la-Cruz, F, Székely, T, Urrutia, A, Georges, A, Cortez, D. (2020). "Viviparous Reptile Regarded to Have Temperature-Dependent Sex Determination Has Old XY Chromosomes.". Genome Biology And Evolution. 12(6):924-930. [doi:10.1093/gbe/evaa104]32433751
2020Salgado-Camargo, A, Castro-Jaimes, S, Gutierrez-Rios, R, Lozano, L, Altamirano-Pacheco, L, Silva-Sanchez, J, Pérez-Oseguera, Á, Volkow, P, Castillo-Ramírez, S, Cevallos, M. (2020). "Structure and Evolution of Acinetobacter baumannii Plasmids". Frontiers in Microbiology. 11():1283-. [doi:10.3389/fmicb.2020.01283]32625185
2020Mejía-Almonte, C, Busby, S, Wade, J, van Helden, J, Arkin, A, Stormo, G, Eilbeck, K, Palsson, B, Galagan, J, Collado-Vides, J. (2020). "Redefining fundamental concepts of transcription initiation in bacteria". NATURE REVIEWS GENETICS. 21(11):699-714. [doi:10.1038/s41576-020-0254-8]32665585
2020Garza-Lopez, E, Aldana, A, Darszon, A, Nishigaki, T, Lopez-Gonzalez, I. (2020). "Ca(V)3.1 channel pore pseudo-symmetry revealed by selectivity filter mutations in its domains I/II". Cell Calcium. 89():102214-. [doi:10.1016/j.ceca.2020.102214]32428730
2020Rebollar-Flores, J, Medina-Aparicio, L, Osio-Becerro, V, Villarreal, J, Mayo, S, Mendoza, B, Rodríguez-Gutierrez, S, Olvera, L, Dávila, S, Encarnación, S, Martínez-Batallar, A, Calva, E, Hernández-Lucas, I. (2020). "The Salmonella enterica Serovar Typhi ltrR Gene Encodes Two Proteins Whose Transcriptional Expression Is Upregulated by Alkaline pH and Repressed at Their Promoters and Coding Regions by H-NS and Lrp". Journal Of Bacteriology. 202(13):e00783-19-. [doi:10.1128/JB.00783-19]32284321
2020Cuaxinque-Flores, G, Luis Aguirre-Noyola, J, Hernandez-Flores, G, Martinez-Romero, E, Romero-Ramirez, Y, Talavera-Mendoza, O. (2020). "Bioimmobilization of toxic metals by precipitation of carbonates using Sporosarcina luteola: An in vitro study and application to sulfide-bearing tailings". SCIENCE OF THE TOTAL ENVIRONMENT. 724():138124-. [doi:10.1016/j.scitotenv.2020.138124]32268286
2020Castillo-Ramírez, S, Mateo-Estrada, V, Gonzalez-Rocha, G, Opazo-Capurro, A. (2020). "Phylogeographical Analyses and Antibiotic Resistance Genes of Acinetobacter johnsonii Highlight Its Clinical Relevance". mSphere. 5(4):00581-. [doi:10.1128/mSphere.00581-20]32611704
2020Cornejo-Juárez, P, Cevallos, M, Castro-Jaimes, S, Castillo-Ramìrez, S, Velázquez-Acosta, C, Martìnez-Oliva, D, Pérez-Oseguera, A, Rivera-Buendìa, F, Volkow-Fernández, P. (2020). "High mortality in an outbreak of multidrug resistant Acinetobacter baumannii infection introduced to an oncological hospital by a patient transferred from a general hospital.". Plos One. 15(7):e0234684-. [doi:10.1371/journal.pone.0234684]32702006
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2013Tsai, I, Zarowiecki, M, Holroyd, N, Garciarrubio, A, Sánchez-Flores, A, Brooks, K, Tracey, A, Bobes, R, Fragoso, G, Sciutto, E, Aslett, M, Beasley, H, Bennett, H, Cai, J, Camicia, F, Clark, R, Cucher, M, De Silva, N, Day, T, Deplazes, P, Estrada, K, Fernández, C, Holland, P, Hou, J, Hu, S, Huckvale, T, Hung, S, Kamenetzky, L, Keane, J, Kiss, F, Koziol, U, Lambert, O, Liu, K, Luo, X, Luo, Y, Macchiaroli, N, Nichol, S, Paps, J, Parkinson, J, Pouchkina-Stantcheva, N, Riddiford, N, Rosenzvit, M, Salinas, G, Wasmuth, J, Zamanian, M, Zheng, Y, Garciarrubio, A, Bobes, R, Fragoso, G, Sánchez-Flores, A, Estrada, K, Cevallos Gaos, M, Morett, E, González Zúñiga, V, Portillo, T, Ochoa-Leyva, A, José, M, Sciutto, E, Landa, A, Jiménez, L, Valdés, V, Carrero, J, Larralde, C, Morales-Montor, J, Limón-Lason, J, Soberón, X, Laclette, J, Cai, X, Soberón, X, Olson, P, Laclette, J, Brehm, K, Berriman, M. (2013). "The genomes of four tapeworm species reveal adaptations to parasitism". Nature. 496(7443):57-63. [doi:10.1038/nature12031]23485966
2013Ramírez Yáñez, M, Flores-Pacheco, G, Reyes, J, Álvarez, A, Drevon, J, Girard Cuesy, M, Hernández Delgado, G. (2013). "Two Common Bean Genotypes with Contrasting Response to Phosphorus Deficiency Show Variations in the microRNA 399-Mediated PvPHO2 Regulation within the PvPHR1 Signaling Pathway". International Journal Of Molecular Sciences. 14(4):8328-8344. [doi:10.3390/ijms14048328]23591845
2013Geiger, O, Lopez-Lara, I, Sohlenkamp, C. (2013). "Phosphatidylcholine biosynthesis and function in bacteria". Biochimica Et Biophysica Acta-Molecular And Cell Biology Of Lipids. 1831(3):503-513. [doi:10.1016/j.bbalip.2012.08.009]22922101
2013Vences Guzmán, M, Guan, Z, Bermúdez Barrientos, J, Geiger, O, Sohlenkamp, C. (2013). "Agrobacteria lacking ornithine lipids induce more rapid tumour formation". Environmental Microbiology. 15(3):895-906. [doi:10.1111/j.1462-2920.2012.02867.x]22958119
2013Servín Garcidueñas, L, Peng X., Garrett R.A., Martínez Romero, M. (2013). "Genome sequence of a novel archaeal fusellovirus assembled from the metagenome of a Mexican hot spring". Genome Announcements. 1(2):e00164-13-. [doi:10.1128/genomeA.00164-13]23618716
2013Ferrera-Rodríguez, O, Greer, C, Juck, D, Consaul, L, Martínez Romero, M, Whyte, L. (2013). "Hydrocarbon-degrading potential of microbial communities from Arctic plants". Journal Of Applied Microbiology. 114(1):71-83. [doi:10.1111/jam.12020]22984892
2013Keseler, I, Mackie, A, Peralta Gil, M, Santos Zavaleta, A, Gama Castro, M, Bonavides Martínez, C, Fulcher, C, Huerta Moreno, A, Kothari, A, Krummenacker, M, Latendresse, M, Muñíz Rascado, L, Ong, Q, Paley, S, Schroder, I, Shearer, A, Subhraveti, P, Travers, M, Weerasinghe, D, Weiss, V, Collado Vides, P, Gunsalus, R, Paulsen, I, Karp, P. (2013). "EcoCyc: Fusing model organism databases with systems biology". Nucleic Acids Research. 41(D1):605-612. [doi:10.1093/nar/gks1027]23143106
2013Aparicio Fabre, R, Guillén, G, Loredo, M, Arellano García, J, Valdes López, O, Ramírez Yáñez, M, Iñiguez Rabago, L, Panzeri, D, Castiglioni, B, Cremonesi, P, Strozzi, F, Stella, A, Girard Cuesy, M, Sparvoli, F, Hernández Delgado, G. (2013). "Common bean (Phaseolus vulgaris L.) PvTIFY orchestrates global changes in transcript profile response to jasmonate and phosphorus deficiency". Bmc Plant Biology. 13():26-26. [doi:10.1186/1471-2229-13-26]23402340
2013Salgado Osorio, H, Peralta Gil, M, Gama Castro, M, Santos Zavaleta, A, Muñíz Rascado, L, Garcia Sotelo, J, Weiss, V, Solano Lira, H, Martínez Flores, I, Medina Rivera, A, Salgado Osorio, G, Alquicira Hernández, S, Alquicira Hernández, K, López Fuentes, A, Porrón Sotelo, L, Huerta Moreno, A, Bonavides Martínez, C, Balderas MartÍnez, Y, Pannier, L, Olvera, M, Labastida, A, Jiménez-Jacinto, V, Vega-Alvarado, L, del Moral Chávez, V, Hernández Álvarez, A, Morett, E, Collado Vides, P. (2013). "RegulonDB v8.0: Omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more". Nucleic Acids Research. 41(D1):203-213. [doi:10.1093/nar/gks1201]23203884
2013Pérez Segura, G, Pérez Oseguera, M, Cevallos Gaos, M. (2013). "The repAC replication system of the Rhizobium leguminosarum pRL7 plasmid is functional: Implications regarding the origin and evolution of repABC plasmids". Plasmid. 69(1):49-57. [doi:10.1016/j.plasmid.2012.08.003]22975386
2013Servín Garcidueñas, L, Peng X., Garrett R.A., Martínez Romero, M. (2013). "Genome sequence of a novel archaeal rudivirus recovered from a Mexican hot spring". Genome Announcements. 1(1):e00040-12-. [doi:10.1128/genomeA.00040-12]23405288
2013Ormeño Orrillo, E, Martínez Romero, M. (2013). "Phenotypic tests in Rhizobium species description: An opinion and (a sympatric speciation) hypothesis". Systematic And Applied Microbiology. 36(3):145-147. [doi:10.1016/j.syapm.2012.11.009]23415482
2013López López, A, Negrete-Yankelevich, S, Rogel Hernández, M, Ormeño Orrillo, E, Martínez Romero, J, Martínez Romero, M. (2013). "Native bradyrhizobia from Los Tuxtlas in Mexico are symbionts of Phaseolus lunatus (Lima bean)". Systematic And Applied Microbiology. 36(1):33-38. [doi:10.1016/j.syapm.2012.10.006]23280323
2013Couillerot, O, Ramírez Trujillo, J, Walker, V, von Felten, A, Jansa, J, Maurhofer, M, Defago, G, Prigent-Combaret, C, Comte, G, Caballero Mellado, J, Moenne-Loccoz, Y. (2013). "Comparison of prominent Azospirillum strains in Azospirillum-pseudomonas-Glomus consortia for promotion of maize growth". Applied Microbiology And Biotechnology. 97(10):4639-4649. [doi:10.1007/s00253-012-4249-z]22805783
2013Estrada De Los Santos, P, Vinuesa Fleischmann, P, Martínez Aguilar, L, Hirsch, A, Caballero Mellado, J. (2013). "Phylogenetic analysis of Burkholderia species by multilocus Sequence Analysis". Current Microbiology. 67(1):51-60. [doi:10.1007/s00284-013-0330-9]23404651
2013Frausto-Solís, J, Sánchez-Pérez, M, Linan-García, E, Sánchez-Hernández, J. (2013). "Threshold temperature tuning Simulated Annealing for Protein Folding Problem in small peptides". COMPUT APPL MATH. 32(3):471-482. [doi:10.1007/s40314-013-0027-5]
2013Abdel-Haliem, M, Sakr, A, Ali, M, Ghaly, M, Sohlenkamp, C. (2013). "Characterization of Streptomyces isolates causing colour changes of mural paintings in ancient Egyptian tombs". Microbiological Research. 168(7):428-437. [doi:10.1016/j.micres.2013.02.004]23507492
2013Dall'Agnol, R, Ribeiro, R, Ormeño Orrillo, E, Rogel Hernández, M, Delamuta, J, Andrade, D, Martínez Romero, M, Hungria, M. (2013). "Rhizobium Freirei sp. nov., a symbiont of Phaseolus vulgaris that is very effective at fixing nitrogen". International Journal Of Systematic And Evolutionary Microbiology. 63(PART 11):4167-4173. [doi:10.1099/ijs.0.052928-0]23771622
2013Rodríguez-Cruz, M, Coral-Vázquez, R, Hernández-Stengele, G, Sánchez, R, Salazar Bustamante, E, Sánchez-Muñoz, F, Encarnación Guevara, S, Ramirez-Salcedo, J. (2013). "Identification of Putative Ortholog Gene Blocks Involved in Gestant and Lactating Mammary Gland Development: A Rodent Cross- Species Microarray Transcriptomics Approach". INTERNATIONAL JOURNAL OF GENOMICS. 2013():624681-624681. [doi:10.1155/2013/624681]24288657
2013Hernández Tamayo, R, Sohlenkamp, C, Puente, J, Brom Klanner, S, Romero Camarena, D. (2013). "Characterization of IntA, a bidirectional site-specific recombinase required for conjugative transfer of the symbiotic plasmid of Rhizobium etli CFN42". Journal Of Bacteriology. 195(20):4668-4677. [doi:10.1128/JB.00714-13]23935046
2013Rincon-Rosales, R, Villalobos-Escobedo, J, Rogel Hernández, M, Martínez Romero, J, Ormeño Orrillo, E, Martínez Romero, M. (2013). "Rhizobium calliandrae sp. nov., Rhizobium mayense sp. nov. and Rhizobium jaguaris sp. nov., rhizobial species nodulating the medicinal legume Calliandra grandiflora". International Journal Of Systematic And Evolutionary Microbiology. 63(PART9):3423-3429. [doi:10.1099/ijs.0.048249-0]23584283
2013Delamuta, J, Ribeiro, R, Ormeño Orrillo, E, Melo, I, Martínez Romero, M, Hungria, M. (2013). "Polyphasic evidence supporting the reclassification of Bradyrhizobium japonicum group Ia strains as Bradyrhizobium Diazoefficiens sp. nov". International Journal Of Systematic And Evolutionary Microbiology. 63(PART9):3342-3351. [doi:10.1099/ijs.0.049130-0]23504968
2013Ribeiro, R, Ormeño Orrillo, E, Dall Agnol, Graham, P, Martínez Romero, M, Hungria, M. (2013). "Novel Rhizobium lineages isolated from root nodules of the common bean (Phaseolus vulgaris L.) in Andean and Mesoamerican areas". Research In Microbiology. 164(7):740-748. [doi:10.1016/j.resmic.2013.05.002]23764913
2013Sohlenkamp, C, Raetz, C, Ingram, B. (2013). "The calcium-stimulated lipid A 3-O deacylase from Rhizobium etli is not essential for plant nodulation". Biochimica Et Biophysica Acta-Molecular And Cell Biology Of Lipids. 1831(7):1250-1259. [doi:10.1016/j.bbalip.2013.04.002]23583844
2013Ormeño Orrillo, E, Servín Garcidueñas, L, Imperial, J, Rey, L, Ruíz-Argueso, T, Martínez Romero, M. (2013). "Phylogenetic evidence of the transfer of nodZ and nolL genes from Bradyrhizobium to other Rhizobia". Molecular Phylogenetics And Evolution. 67(3):626-630. [doi:10.1016/j.ympev.2013.03.003]23499616
2013Pérez Oseguera, M, Cevallos Gaos, M. (2013). "RepA and RepB exert plasmid incompatibility repressing the transcription of the repABC operon". Plasmid. 70(3):362-376. [doi:10.1016/j.plasmid.2013.08.001]24016735
2013Morales-Jiménez, J, de León, A, García-Domínguez, A, Martínez Romero, M, Zuñiga, G, Hernández-Rodríguez, C. (2013). "Nitrogen-Fixing and Uricolytic Bacteria Associated with the Gut of Dendroctonus rhizophagus and Dendroctonus valens (Curculionidae: Scolytinae)". Microbial Ecology. 66(1):200-210. [doi:10.1007/s00248-013-0206-3]23525792
2013O'Rourke, J, Iñiguez Rabago, L, Bucciarelli, B, Roessler, J, Schmutz, J, McClean, P, Jackson, S, Hernández Delgado, G, Graham, M, Stupar, R, Vance, C. (2013). "A re-sequencing based assessment of genomic heterogeneity and fast neutron-induced deletions in a common be an cultivar". Frontiers In Plant Science. 4():210-210. [doi:10.3389/fpls.2013.00210]23805147
2013Moreno, A, Isern, D, Fuentes, A. (2013). "Ontology-based information extraction of regulatory networks from scientific articles with case studies for Escherichia coli". EXPERT SYSTEMS WITH APPLICATIONS. 40(8):3266-3281. [doi:10.1016/j.eswa.2012.12.090]
2013Balderas MartÍnez, Y, Savageau, M, Salgado Osorio, H, Pérez-Rueda, E, Morett, E, Collado Vides, P. (2013). "Transcription Factors in Escherichia coli Prefer the holo Conformation". Plos One. 8(6):e65723-. [doi:10.1371/journal.pone.0065723]23776535
2013Higareda Almaraz, J, Valtierra Gutiérrez, I, Hernández Ortiz, M, Contreras Martínez, S, Hernádez, E, Encarnación Guevara, S. (2013). "Analysis and Prediction of Pathways in HeLa Cells by Integrating Biological Levels of Organization with Systems-Biology Approaches". Plos One. 8(6):UNSP e65433-. [doi:10.1371/journal.pone.0065433]23785426
2013Ramírez Yáñez, M, Guillén, G, Fuentes Membreño, S, Iñiguez Rabago, L, Aparicio Fabre, R, Zamorano Sánchez, D, Encarnación Guevara, S, Panzeri, D, Castiglioni, B, Cremonesi, P, Strozzi, F, Stella, A, Girard Cuesy, M, Sparvoli, F, Hernández Delgado, G. (2013). "Transcript profiling of common bean nodules subjected to oxidative stress". Physiologia Plantarum. 149(3):389-407. [doi:10.1111/ppl.12040]23432573
2013Freyre González, J, Manjarrez-Casas, A, Merino. E., Martínez-Nuñez, M, Pérez Rueda, E, Gutiérrez Ríos, R. (2013). "Lessons from the modular organization of the transcriptional regulatory network of Bacillus Subtilis". Bmc Systems Biology. 7():127-127. [doi:10.1186/1752-0509-7-127]24237659
2013Martínez Romero, M. (2013). "Los Biofertilizantes y su uso en la Agricultura. SAGARPA-COFUPRO-UNAM". Manual teórico-práctico. ():47-.
2013Martínez Aguilar, L, Salazar-Salazar, C, Díaz Mendez, R, Caballero Mellado, J, Hirsch, A, Vasquez-Murrieta, M, Estrada De Los Santos, P. (2013). "Burkholderia Caballeronis sp nov., a nitrogen fixing species isolated from tomato (Lycopersicon esculentum) with the ability to effectively nodulate Phaseolus vulgaris". Antonie Van Leeuwenhoek International Journal of General and Molecular; Microbiology. 104(6):1063-1071. [doi:10.1007/s10482-013-0028-9]24057982
2013Galindo Fentanes, E, Sánchez Castillo, J, Calva Mercado, E, Cuevas García, S, Davis Martínez, O, Larralde Ridaura, H, Iturriaga de la Fuente, G, Hernández Delgado, G. (2013). "La Ciencia desde Morelos para el Mundo Tomo III: Química, Física y Matemáticas". La Unión de Morelos. ():-.
2013de Luna, L, León, P, Encarnación Guevara, S, Guevara-García, A. (2013). "Chloroplast omics". Barh Delmya. ():-.
2013Gutiérrez-Román, M, Dunn, M, Tinoco-Valencia, F, Holguín-Meléndez, K, Guillen Navarro, G, Huerta-Palacios, G. (2013). "Antifungal activity of chitinases (chiA, chiC and chiB) produced by Serratia marcescens CFFSUR-B2 against Mycosphaerella Fijiensis causal agent of black sigatoka in banana (Musa spp.)". Acta Phytopathol. 43():96-.
2013Palacios de la Lama, R, Flores López, M, Palacios Flores, K. (2013). "DNA AMPLIFICATION in vivo". Brenners Encyclopedia of Genetics. 2():341-343.
2013. (2013). "Extrinsic Evaluation on Automatic Summarization Tasks. Testing Affixality Measurements for Statistical Word Stemming". MICAI 2012: Advances in Computational Intelligence. II():46-57.
2013Chavez-Moreno, C, Tecante, A, Fragoso-Serrano, M, Rogelio, P, Casas, A, Claps, L, Ramirez-Puebla, S, Rosenblueth, M, Martinez-Romero, E. (2013). "The opuntia (cactaceae) and Dactylopius (hemiptera: Dactylopiidae) in mexico: A historical perspective of use, interaction and distribution with particular emphasis on chemical and phylogenetic aspects of the Dactylopius species". Acta Horticulturae. 995():367-378. [doi:10.17660/actahortic.2013.995.48]
2013Reyes González, A, Zamorano Sánchez, D, Rivera Rosas, P, Girard Cuesy, M. (2013). "hFixL-FxkR are the key regulators for fixKf-related gene expression". Mexican Journal of Scientific Research. ():-.
2013da Silva, M, Santos, D, de Lyra, M, Mondragon-Jacobo, C, Martinez-Romero, E. (2013). "Isolation and molecular characterization of endophytic bacteria associated with forage cactus (Opuntia spp.)". Acta Horticulturae. 995():99-108. [doi:10.17660/ActaHortic.2013.995.12]
2013Palacios de la Lama, R, Palacios Flores, K, Flores López, M. (2013). "REARRANGEMENTS". Brenners Encyclopedia of Genetics. 6():44-46.
2013Reddy, P, Altúzar Molina, A, Ortíz Berrocal, M, Medina-Andrés, R, López Sámano, M, Martínez Aguilar, L, Velázquez Hernández, M. (2013). "Predisposition and Redesigning of Genetic Networks of Rice for Accommodating Nitrogen-Fixing Rhizobial Symbiosis". Muralidharan K and Siddiq EA. ():245-257.
2013López Guerrero, M, Ramírez Romero, M, Martínez Romero, M. (2013). "Rhizobial genetic repertoire to inhabit legume and nonlegume rhizospheres". Molecular Microbial Ecology of the Rhizosphere. 1():495-500.
2013Ramírez Puebla, S, Servín Garcidueñas, L, Jiménez Marín, L, Bolaños Avellaneda, L, Rosenblueth Laguette, M, Martínez Romero, J, Rogel Hernández, M, Ormeño Orrillo, E, Martínez Romero, M. (2013). "Gut and root microbiota commonalities". Applied And Environmental Microbiology. 79(1):2-9. [doi:10.1128/AEM.02553-12]23104406
2013De Lyra, M, Santos, D, Da Silva, M, Mondragón-Jacobo, C, Martínez-Romero, E. (2013). "Molecular characteristics of opuntias based on internal transcribed spacer sequences (ITS) of Queretaro State-Mexico". Acta Horticulturae. 995():27-34. [doi:10.17660/ActaHortic.2013.995.2]
2013Navarro-Noya, Y, Martínez Romero, M, Hernández-Rodríguez, C. (2013). "Potential plant-growth-promoting and nitrogen-fixing bacteria associated with pioneer plants growing on mine tailings". Molecular Microbial Ecology of the Rhizosphere. 2():1003-1011.
2013Ormeño-Orrillo, E, Hungria, M, Martinez-Romero, E. (2013). "Dinitrogen-fixing prokaryotes". The Prokaryotes: Prokaryotic Physiology And Biochemistry. 9783642301414():427-451. [doi:10.1007/978-3-642-30141-4_72]
2013Contreras-Moreira, B, Vinuesa Fleischmann, P. (2013). "GET_HOMOLOGUES, a versatile software package for scalable and robust microbial pangenome analysis". Applied And Environmental Microbiology. 79(24):7696-7701. [doi:10.1128/AEM.02411-13]24096415
2013Cubillas Ramírez, C, Vinuesa Fleischmann, P, Tabche, M, García de los Santos, A. (2013). "Phylogenomic analysis of Cation Diffusion Facilitator proteins uncovers Ni2+/Co2+ transporters". Metallomics. 5(12):1634-1643. [doi:10.1039/c3mt00204g]24077251
2013Ormeño Orrillo, E, Hungria, M, Martínez Romero, M. (2013). "The Prokaryotes?Prokaryotic Physiology and Biochemistry". Capítulo 11 Dinitrogen fixing prokaryotes. ():-.
2013Gerardo Trevino-Quintanilla, L, Augusto Freyre-Gonzalez, J, Martinez-Flores, I. (2013). "Anti-Sigma Factors in E-coli: Common Regulatory Mechanisms Controlling Sigma Factors Availability". Current Genomics. 14(6):378-387. [doi:10.2174/1389202911314060007]24396271
2013Castillo-Ramírez, S, Feil, E. (2013). "Population genetics". The Prokaryotes: Prokaryotic Biology And Symbiotic Associations. ():255-266. [doi:10.1007/978-3-642-30194-0_83]
2013Frausto-Solis, J, Sanchez-Perez, M, Linan-Garcia, E, Paulo Sanchez-Hernandez, J, Ramachandran, M. (2013). "Cluster Perturbation Simulated Annealing for Protein Folding Problem". JOURNAL OF UNIVERSAL COMPUTER SCIENCE. 19(15):2207-2223.
2013Wiesner, M, Fernandez-Mora, M, Cevallos, M, Zavala-Alvarado, C, Zaidi, M, Calva, E, Silva, C. (2013). "Conjugative transfer of an IncA/C plasmid-borne bla(CMY-2) gene through genetic re-arrangements with an IncX1 plasmid". Bmc Microbiology. 13():264-264. [doi:10.1186/1471-2180-13-264]24262067
2013Yessica, G, Alejandro, A, Ronald, F, José, A, Esperanza, M, Samuel, C, Remedios, M, Ormeño Orrillo, E. (2013). "Tolerance, growth and degradation of phenanthrene and benzo[a]pyrene by Rhizobium tropici CIAT 899 in liquid culture medium". APPLIED SOIL ECOLOGY. 63():105-111. [doi:10.1016/j.apsoil.2012.09.010]
2013Tenorio-Salgado, S, Tinoco, R, Vazquez-Duhalt, R, Caballero-Mellado, J, Perez-Rueda, E. (2013). "Identification of volatile compounds produced by the bacterium Burkholderia tropica that inhibit the growth of fungal pathogens". Bioengineered. 4(4):236-243. [doi:10.4161/bioe.23808]23680857
2013Lopez-Guerrero, M, Ormeno-Orrillo, E, Rosenblueth, M, Martinez-Romero, J, Martinez-Romero, E. (2013). "Buffet hypothesis for microbial nutrition at the rhizosphere". Frontiers In Plant Science. 4(JUN):188-188. [doi:10.3389/fpls.2013.00188]23785373
2013Weiss, V, Medina-Rivera, A, Huerta, A, Santos-Zavaleta, A, Salgado, H, Morett, E, Collado-Vides, J. (2013). "Evidence classification of high-throughput protocols and confidence integration in RegulonDB". DATABASE-THE JOURNAL OF BIOLOGICAL DATABASES AND CURATION. 2013():bas059-. [doi:10.1093/database/bas059]23327937
2013Esparza-Garrido, R, Velazquez-Flores, M, Diegoperez-Ramírez, J, López-Aguilar, E, Siordia-Reyes, G, Hernández Ortiz, M, Martínez Batallar, Á, Encarnación Guevara, S, Salamanca-Gomez, F, Arenas-Aranda, D. (2013). "A proteomic approach of pediatric astrocytomas: MiRNAs and network insight". Journal Of Proteomics. 94():162-175. [doi:10.1016/j.jprot.2013.09.009]24060999
2013Servín Garcidueñas, L, Garrett R.A., Amils R., Martínez Romero, M. (2013). "Genome sequence of the acidophilic bacterium Acidocella sp. strain MX-AZ02". Genome Announcements. 1(1):e00041-12-. [doi:10.1128/genomeA.00041-12]23405365
2012Althabegoiti, M, Lozano Aguirre Beltrán, L, Torres-Tejerizo, G, Ormeño Orrillo, E, Rogel Hernández, M, González Zúñiga, V, Martínez Romero, M. (2012). "Genome sequence of Rhizobium Grahamii CCGE502, a broad-host-range symbiont with low nodulation competitiveness in Phaseolus vulgaris". Journal Of Bacteriology. 194(23):6651-6652. [doi:10.1128/JB.01785-12]23144400
2012Romero, D, Alonso-Pecina, F. (2012). "Ad hoc heuristic for the cover printing problem". DISCRETE OPTIM. 9(1):17-28. [doi:10.1016/j.disopt.2011.10.002]
2012Lopez-Ortiz, C, Ferrera-Cerrato, R, Alarcon, A, Jose Almaraz, J, Martinez-Romero, E, Remedios Mendoza-Lopez, M. (2012). "ESTABLISHMENT AND PHYSIOLOGICAL RESPONSES OF THE SYMBIOSIS BETWEEN Rhizobium tropici AND Leucaena leucocephala UNDER CONTAMINATED SYSTEMS WITH NAPHTALENE AND PHENANTHRENE". REVISTA INTERNACIONAL DE CONTAMINACION AMBIENTAL. 28(4):333-342.
2012Calvillo, G, Romero, D. (2012). "The dominance assignment problem". DISCRETE OPTIM. 9(3):149-158. [doi:10.1016/j.disopt.2012.06.001]
2012Higareda, M, Geiger, O, Mendoza, L, Mendez-Sánchez, R. (2012). "Evidence of codon usage in the nearest neighbor spacing distribution of bases in bacterial genomes". PHYSICA A-STATISTICAL MECHANICS AND ITS APPLICATIONS. 391(4):1255-1269. [doi:10.1016/j.physa.2011.10.035]
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2006López Lara, I, Sohlenkamp, C, Geiger, O. (2006). "The post-genomic era - What comes next?". Revista Latinoamericana De Microbiologia. 48(1):44-45. 17357573
2006Encarnación Guevara, S, Salazar Bustamante, E, Martínez Batallar, Á, Hernández Ortiz, M, Reyes Pérez, A, Contreras Martínez, S, Vargas Lagunas, M, Domínguez Vidaña, R, Gonzaga Jáuregui, C, Pérez-Tejada Domínguez, Y, Rivero Zaragoza, M, Mora Celis, J. (2006). "GENÓMICA FUNCIONAL EN RIZOBIACEAS". Revista Latinoamericana de Microbiología. 48(2):135-141.
2006Martínez Romero, M. (2006). "Detective de bacterias". Descubrimientos y Aportaciones Científicas y Humanísticas Mexicanas en el Siglo XX. (0):-.
2006Salgado Osorio, H, Santos Zavaleta, A, Gama Castro, M, Peralta Gil, M, Peñaloza Spinola, M, Martínez Antonio, A, Karp, P, Collado Vides, P. (2006). "The comprehensive updated regulatory network of Escherichia coli K-12". Bmc Bioinformatics. 7():5-5. [doi:10.1186/1471-2105-7-5]16398937
2006Silva Romero, C, Vinuesa Fleischmann, P, Martínez Romero, M. (2006). "Species delineation and biogeography of Rhizobia: Two case studies". Proceedings of the 12th International Congress on Molecular Plant-Microbe Interactions. 5():319-324.
2006Rogel Hernández, M, Torres, C, Lloret y Sánchez, L, Rosenblueth Laguette, M, Hernández-Lucas, I, Martínez Aguilar, L, Martínez Salazar, J, Martínez Romero, M. (2006). "Lateral transfer of Rhizobium symbiotic plasmids leading to genomic innovation". Proceedings of the 12th International Congress on Molecular Plant-Microbe Interactions. 5():310-318.
2006Caballero Mellado, J. (2006). "Agriculture microbiology and microbe interaction with plants". Revista Latinoamericana De Microbiologia. 48(2):154-155. 17578087
2006González Zúñiga, V, Santamaria Gutiérrez, R, Bustos Arcos, V, Hernández González, I, Medrano Soto, L, Moreno Hagelsieb, G, Janga, S, Ramírez Romero, M, Jiménez Jacinto, V, Collado Vides, P, Dávila Ramos, J. (2006). "The partitioned Rhizobium etli genome: Genetic and metabolic redundancy in seven interacting replicons". PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 103(10):3834-3839. [doi:10.1073/pnas.0508502103]16505379
2006Lara Flores, M, Blanco López, M, Silvente Keller, S, Graham, M, Ramírez Romero, M, Reddy, P, Hernández Delgado, G, Vance, C. (2006). "Genomic approaches for analysis of legume-Rhizobium symbiotic interactions and nodule metabolism in bean (Phaseolus vulgaris)". Proceedings of the 12th International Congress on Molecular Plant-Microbe Interactions. 5(0):138-143.
2006Geiger, O, Sohlenkamp, C, López Lara, I. (2006). "Function of rhizobial membrane lipids for the symbiosis with legumes". Proceedings of the 12th International Congress on Molecular Plant-Microbe Interactions. 5():132-137.
2006Huerta-Nuñez, L, Martínez, J, Alcocer, R, Ramsey, J, Martinez-Romero, E. (2006). "Diversity of endosymbiotic bacteria of insects belonging to the triatominae". Revista Latinoamericana De Microbiologia. 48(2):212-215.
2006Sánchez, F, Quinto, C, López Lara, I, Geiger, O. (2006). "Biology of Plant-Microbe Interactions". Proceedings of the 12th International Congress on Molecular Plant-Microbe Interactions. 5():1-717.
2006Rosenblueth Laguette, M, Martínez Romero, M. (2006). "Bacterial endophytes and their interactions with hosts". Molecular Plant-Microbe Interactions. 19(8):827-837. [doi:10.1094/MPMI-19-0827]16903349
2006Perin, L, Martinez-Aguilar, L, Paredes-Valdez, G, Baldani, J, Estrada-de los Santos, P, Reis, V, Caballero-Mellado, J. (2006). "Burkholderia silvatlantica sp nov., a diazotrophic bacterium associated with sugar cane and maize". International Journal Of Systematic And Evolutionary Microbiology. 56(8):1931-1937. [doi:10.1099/ijs.0.64362-0]16902033
2006Encarnación-Guevara S.. (2006). "Genómica y genómica funcional en microbiología". Revista Latinoamericana de Microbiología. 48(2):131-132. 17578085
2006Aguilar-Diaz, H, Bobes, R, Carrero, J, Camacho-Carranza, R, Cervantes, C, Cevallos, M, Davila, G, Rodriguez-Dorantes, M, Escobedo, G, Fernandez, J, Fragoso, G, Gaytan, P, Garciarubio, A, Gonzalez, V, Gonzalez, L, Jose, M, Jimenez, L, Laclette, J, Landa, A, Larralde, C, Morales-Montor, J, Morett, E, Ostoa-Saloma, P, Sciutto, E, Santamaria, R, Soberon, X, de la Torre, P, Valdes, V, Yanez, J. (2006). "The genome project of Taenia solium". PARASITOLOGY INTERNATIONAL. 55(SUPPL.):127-130. [doi:10.1016/j.parint.2005.11.020]16337432
2006Moreno-Campuzano, S, Janga, S, Perez-Rueda, E. (2006). "Identification and analysis of DNA-binding transcription factors in Bacillus Subtilis and other Firmicutes - a genomic approach". Bmc Genomics. 7():147-147. [doi:10.1186/1471-2164-7-147]16772031
2006Sreevidya, V, Rao, C, Sullia, S, Ladha, J, Reddy, P. (2006). "Metabolic engineering of rice with soybean isoflavone synthase for promoting nodulation gene expression in Rhizobia". Journal Of Experimental Botany. 57(9):1957-1969. [doi:10.1093/jxb/erj143]16690627
2006Batista, C, D'Suze, G, Gomez-Lagunas, F, Zamudio, F, Encamacion, S, Sevcik, C, Possani, L. (2006). "Proteomic analysis of Tityus discrepans scorpion venom and amino acid sequence of novel toxins". Proteomics. 6(12):3718-3727. [doi:10.1002/pmic.200500525]16705749
2006Perin, L, Martinez-Aguilar, L, Castro-Gonzalez, R, Estrada-de Los Santos, P, Cabellos-Avelar, T, Guedes, H, Reis, V, Caballero-Mellado, J. (2006). "Diazotrophic Burkholderia species associated with field-grown maize and sugarcane". Applied And Environmental Microbiology. 72(5):3103-3110. [doi:10.1128/AEM.72.5.3103-3110.2006]16672447
2006Moreira, F, Cruz, L, de Faria, S, Marsh, T, Martinez-Romero, E, Pedrosa, F, Pitard, R, Young, J. (2006). "Azorhizobium doebereinerae sp. Nov. Microsymbiont of Sesbania virgata (Caz.) Pers.". Systematic And Applied Microbiology. 29(3):197-206. [doi:10.1016/j.syapm.2005.09.004]16564956
2006Ramirez-Romero, M, Masulis, I, Cevallos, M, Gonzalez, V, Davila, G. (2006). "The Rhizobium etli s70 (SigA) factor recognizes a lax consensus promoter". Nucleic Acids Research. 34(5):1470-1480. [doi:10.1093/nar/gkl023]16528104
2006Marin-Cevada, V, Vargas, V, Juarez, M, Lopez, V, Zagada, G, Hernandez, S, Cruz, A, Caballero-Mellado, J, Lopez-Reyes, L, Jimenez-Salgado, T, Carcano-Montiel, M, Fuentes-Ramirez, L. (2006). "Presence of Pantoea Citrea, causal agent of pink disease, in pineapple fields in Mexico". PLANT PATHOLOGY. 55(2):294-294. [doi:10.1111/j.1365-3059.2005.01331.x]
2006Velasco-Garcia, R, Villalobos, M, Ramirez-Romero, M, Mujica-Jimenez, C, Iturriaga, G, Munoz-Clares, R. (2006). "Betaine aldehyde dehydrogenase from pseudomonas Aeruginosa: cloning, over-expression in Escherichia coli, and regulation by choline and salt". Archives Of Microbiology. 185(1):14-22. [doi:10.1007/s00203-005-0054-8]16315011
2006Graham, M, Ramirez, M, Valdes-Lopez, O, Lara, M, Tesfaye, M, Vance, C, Hernandez, G. (2006). "Identification of candidate phosphorus stress induced genes in Phaseolus vulgaris through clustering analysis across several plant species". FUNCTIONAL PLANT BIOLOGY. 33(8):789-797. [doi:10.1071/FP06101]32689290
2006Hernández Lucas, I, Ramírez Trujillo, J, Gaitan, M, Guo, X, Flores López, M, Martínez Romero, M, Perez-Rueda, E, Mavingui, P. (2006). "Isolation and characterization of functional insertion sequences of Rhizobia". Fems Microbiology Letters. 261(1):25-31. [doi:10.1111/j.1574-6968.2006.00319.x]16842354
2006Janga, S, Lamboy, W, Huerta, A, Moreno-Hagelsieb, G. (2006). "The distinctive signatures of promoter regions and operon junctions across prokaryotes". Nucleic Acids Research. 34(14):3980-3987. [doi:10.1093/nar/gkl563]16914446
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2006Caballero-Mellado, J, Tenorio Salgado, S, Onofre Lemus, J, Castro González, R, Estrada De Los Santos, P, Paredes Valdez, G, Peña-Cabriales, J, Díaz-Méndez, R, Martínez-Aguilar, L. (2006). "Mechanisms involved in the promotion of plant growth expressed by new species of nitrogen-fixer Burkholderia". Revista Latinoamericana De Microbiologia. 48(2):155-156.
2006Albino, U, Saridakis, D, Ferreira, M, Hungria, M, Vinuesa, P, Andrade, G. (2006). "High diversity of diazotrophic bacteria associated with the carnivorous plant Drosera villosa var. villosa growing in oligotrophic habitats in Brazil". PLANT AND SOIL. 287(1-2):199-207. [doi:10.1007/s11104-006-9066-7]
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2006Wang, E, Tan, Z, Guo, X, Rodriguez-Duran, R, Boll, G, Martínez Romero, M. (2006). "Diverse endophytic bacteria isolated from a leguminous tree Conzattia multiflora grown in Mexico". Archives Of Microbiology. 186(4):251-259. [doi:10.1007/s00203-006-0141-5]16862424
2006Alvarez, R, de Mendoza, A, Escobedo, D, Felix, G, Sanchez, I, González Zúñiga, V, Dávila Ramos, J, Cao, Q, de Jong, P, Fu, Y, Saldana, H. (2006). "Growth hormone locus expands and diverges after the separation of New and Old World Monkeys". Gene. 380(1):38-45. [doi:10.1016/j.gene.2006.05.017]16872758
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2006Menna, P, Hungria, M, Barcellos, F, Bangel, E, Hess, P, Martínez Romero, M. (2006). "Molecular phylogeny based on the 16S rRNA gene of elite rhizobial strains used in Brazilian commercial inoculants". Systematic And Applied Microbiology. 29(4):315-332. [doi:10.1016/j.syapm.2005.12.002]16442259
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2006Cabrera-Valladares, N, Richardson, A, Olvera, C, Trevino, L, Deziel, E, Lepine, F, Soberon-Chavez, G. (2006). "Monorhamnolipids and 3-(3-hydroxyalkanoyloxy)alkanoic acids (HAAs) production using Escherichia coli as a heterologous host". Applied Microbiology And Biotechnology. 73(1):187-194. [doi:10.1007/s00253-006-0468-5]16847602
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2006Martinez-Romero, E. (2006). "Dinitrogen-Fixing Prokaryotes". Prokaryotes: A Handbook On The Biology Of Bacteria, Vol 2, Third Edition. ():793-817. [doi:10.1007/0-387-30742-7_24]
2006Santos-Zavaleta, A, Salgado, H, Gama-Castro, S, Peralta-Gil, M, Contreras-Moreira, B, Penaloza-Spinola, M, Collado-Vides, J. (2006). "RegulonDB. The most important database in transcriptional regulatory network, operon organization, and growth conditions of Escherichia coli K12". Proceedings Of The Fifth International Conference On Bioinformatics Of Genome Regulation And Structure, Vol 3. ():323-323.
2005Shamseldin, A, Vinuesa, P, Thierfelder, H, Werner, D. (2005). "Rhizobium etli and Rhizobium gallicum nodulate Phaseolus vulgaris in Egyptian soils and display cultivar-dependent symbiotic efficiency". Symbiosis. 38(2):145-161.
2005Lopez-Lara, I, Gao, J, Soto, M, Solares-Perez, A, Weissenmayer, B, Sohlenkamp, C, Verroios, G, Thomas-Oates, J, Geiger, O. (2005). "Phosphorus-free membrane lipids of Sinorhizobium meliloti are not required for the symbiosis with alfalfa but contribute to increased cell yields under phosphorus-limiting conditions of growth". Molecular Plant-Microbe Interactions. 18(9):973-982. [doi:10.1094/MPMI-18-0973]16167767
2005Perez-Mendoza, D, Sepulveda, E, Pando, V, Munoz, S, Nogales, J, Olivares, J, Soto, M, Herrera-Cervera, J, Romero, D, Brom, S, Sanjuan, J. (2005). "Identification of the rctA gene, which is required for repression of conjugative transfer of rhizobial symbiotic megaplasmids". Journal Of Bacteriology. 187(21):7341-7350. [doi:10.1128/JB.187.21.7341-7350.2005]16237017
2005Izquierdo, J, Venkova-Canova, T, Ramirez-Romero, M, Tellez-Sosa, J, Hernandez-Lucas, I, Sanjuan, J, Cevallos, M. (2005). "An antisense RNA plays a central role in the replication control of a repC plasmid". Plasmid. 54(3):259-277. [doi:10.1016/j.plasmid.2005.05.003]16005966
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2005Chavez-Zamora, J, Salazar, E, Encarnacion, S. (2005). "Global analysis of genome expression in Sinorhizobium meliloti strain 1021 using microarrays.". Biological Nitrogen Fixation, Sustainable Agriculture And The Environment. 41():141-141.
2005Vargas, M, Encarnacion, S, Girard, M, Reyes, A, Mora, Y, Mora, J. (2005). "Characterization of the alternative protection programs against oxidative-stress in free life and symbiosis from Rhizobium etli". Biological Nitrogen Fixation, Sustainable Agriculture And The Environment. 41():331-331.
2005Guillen-Navarro, K, Araiza, G, Garcia-de los Santos, A, Mora, Y, Dunn, M. (2005). "The Rhizobium etli bioMNY operon is involved in biotin transport". Fems Microbiology Letters. 250(2):209-219. [doi:10.1016/j.femsle.2005.07.020]16099603
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2005Gonzalez, A, Espinosa, V, Vasconcelos, A, Perez-Rueda, E, Collado Vides, P. (2005). "TRACTOR_DB: A database of regulatory networks in gamma-proteobacterial genomes". Nucleic Acids Research. 33(DATABASE ISS.):98-102. [doi:10.1093/nar/gki054]15608293
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2005Encarnacion, S, Hernandez, M, Martinez-Batallar, G, Contreras, S, Vargas, M, Mora, J. (2005). "Comparative proteomics using 2-D gel electrophoresis and mass spectrometry as tools to dissect stimulons and regulons in bacteria with sequenced or partially sequenced genomes". BIOLOGICAL PROCEDURES ONLINE. 7():117-135. [doi:10.1251/bpo110]16145578
2005Resendis Antonio, O, Freyre González, J, Menchaca Mendez, R, Gutiérrez Ríos, R, Martínez Antonio, A, Ávila Sánchez, C, Collado Vides, P. (2005). "Modular analysis of the transcriptional regulatory network of E. coli". TRENDS IN GENETICS. 21(1):16-20. [doi:10.1016/j.tig.2004.11.010]15680508
2005Ibarra-Junquera, V, Torres, L, Rosu, H, Arguello, G, Collado-Vides, J. (2005). "Nonlinear software sensor for monitoring genetic regulation processes with noise and modeling errors". PHYSICAL REVIEW E. 72(1):11919-11919. [doi:10.1103/PhysRevE.72.011919]16090013
2005Santoyo, G, Martinez-Salazar, J, Rodriguez, C, Romero, D. (2005). "Gene conversion tracts associated with crossovers in Rhizobium etli". Journal Of Bacteriology. 187(12):4116-4126. [doi:10.1128/JB.187.12.4116-4126.2005]15937174
2005Lloret y Sánchez, L, Martínez Romero, M. (2005). "Evolution and phylogeny of Rhizobium". Revista Latinoamericana De Microbiologia. 47(1-2):43-60. 17061545
2005Ramirez, M, Graham, M, Blanco-Lopez, L, Silvente, S, Medrano-Soto, A, Blair, M, Hernandez, G, Vance, C, Lara Flores, M. (2005). "Sequencing and analysis of common bean ESTs. Building a foundation for functional genomics". Plant Physiology. 137(4):1211-1227. [doi:10.1104/pp.104.054999]15824284
2005Muthukumarasamy, R, Cleenwerck, I, Revathi, G, Vadivelu, M, Janssens, D, Hoste, B, Gum, K, Park, K, Son, C, Sa, T, Caballero-Mellado, J. (2005). "Natural association of Gluconacetobacter diazotrophicus and Diazotrophic Acetobacter Peroxydans with wetland rice". Systematic And Applied Microbiology. 28(3):277-286. [doi:10.1016/j.syapm.2005.01.006]15900973
2005Medrano-Soto, A, Christen, J, Collado-Vides, J. (2005). "BClass: A Bayesian approach based on mixture models for clustering and classification of heterogeneous biological data". JOURNAL OF STATISTICAL SOFTWARE. 13(2):1-18. [doi:10.18637/jss.v013.i02]
2005Valdes, M, Perez, N, Estrada de los Santos, P, Caballero-Mellado, J, Pena-Cabriales, J, Normand, P, Hirsch, A. (2005). "Non-Frankia actinomycetes isolated from surface-sterilized roots of casuarina equisetifolia fix nitrogen". Applied And Environmental Microbiology. 71(1):460-466. [doi:10.1128/AEM.71.1.460-466.2005]15640222
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2005Romero, D. (2005). "Revista Latinoamericana de Microbiologia: Message from the Editor in chief". Revista Latinoamericana De Microbiologia. 47(1-2):5-5.
2005Vinuesa Fleischmann, P, Silva Romero, C, Werner, D, Martínez Romero, M. (2005). "Population genetics and phylogenetic inference in bacterial molecular systematics: The roles of migration and recombination in Bradyrhizobium species cohesion and delineation". Molecular Phylogenetics And Evolution. 34(1):29-54. [doi:10.1016/j.ympev.2004.08.020]15579380
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2005Davila, S, Pinero, D, Bustos, P, Cevallos, M, Davila, G. (2005). "The mitochondrial genome sequence of the scorpion Centruroides limpidus (Karsch 1879) (Chelicerata; Arachnida)". Gene. 360(2):92-102. [doi:10.1016/j.gene.2005.06.008]16183216
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2005Vinuesa Fleischmann, P, Silva Romero, C, Lorite, M, Izaguirre-Mayoral, M, Bedmar, E, Martínez Romero, M. (2005). "Molecular systematics of Rhizobia based on maximum likelihood and Bayesian phylogenies inferred from rrs, atpD, recA and nifH sequences, and their use in the classification of Sesbania microsymbionts from Venezuelan wetlands". Systematic And Applied Microbiology. 28(8):702-716. [doi:10.1016/j.syapm.2005.05.007]16261860
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2005Kuykendall, L, Young, J, Martínez Romero, M, Kerr, A, Sawada, H. (2005). "Rhizobium". Bergeys Manual of Systematic Bacteriology. 2():325-340.
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2005Fuentes-Ramírez, L, Caballero Mellado, J. (2005). "Bacterial biofertilizers". PGPR: Biocontrol and Biofertilization. ():143-172.
2005Dávila Ramos, J, González Zúñiga, V, Ramírez Romero, M, Rodríguez Sánchez, O. (2005). "Rhizobium etli genome biology". Nitrogen Fixation: Origins, Applications and Research Progress. 3():133-142.
2005Dávila Ramos, J, Palacios de la Lama, R. (2005). "Origins of genomics in nitrogen fixation research". Nitrogen Fixation: Origins, Applications and Research Progress. 3():1-6.
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2005Vinuesa Fleischmann, P, Leon-Barrios, M, Silva Romero, C, Willems, A, Jarabo-Lorenzo, A, Perez-Galdona, R, Werner, D, Martínez Romero, M. (2005). "Bradyrhizobium canariense sp. nov., an acid-tolerant endosymbiont that nodulates endemic genistoid legumes (Papilionoideae: Genisteae) from the Canary Islands, along with Bradyrhizobium japonicum bv. genistearum, Bradyrhizobium genospecies alpha and Bradyrhizobium genospecies beta". International Journal Of Systematic And Evolutionary Microbiology. 55(2):569-575. [doi:10.1099/ijs.0.63292-0]15774626
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2005Guia, M, Perez, A, Angarica, V, Vasconcelos, A, Collado Vides, P. (2005). "Complementing computationally predicted regulatory sites in Tractor_DB using a pattern matching approach". In Silico Biology: Journal of Biological Systems Modeling and Multi-Scale Simulation. 5(2):209-219. 15972018
2005Sreevidya, V, Hernandez-Oane, R, So, R, Sullia, S, Stacey, G, Ladha, J, Reddy, P. (2005). "Expression of the legume symbiotic lectin genes psl and gs52 promotes rhizobial colonization of roots in rice". Plant Science. 169(4):726-736. [doi:10.1016/j.plantsci.2005.05.024]
2005Menchaca Mendez, R, Janga, S, Collado Vides, P. (2005). "The network of transcriptional interactions imposes linear constrains in the genome". OMICS-A JOURNAL OF INTEGRATIVE BIOLOGY. 9(2):139-145. [doi:10.1089/omi.2005.9.139]15969646
2005Silva Romero, C, Vinuesa Fleischmann, P, Eguiarte, L, Souza, V, Martínez Romero, M. (2005). "Evolutionary genetics and biogeographic structure of Rhizobium gallicum sensu lato, a widely distributed bacterial symbiont of diverse legumes". MOLECULAR ECOLOGY. 14(13):4033-4050. [doi:10.1111/j.1365-294X.2005.02721.x]16262857
2005Espinosa, V, Gonzalez, A, Vasconcelos, A, Huerta Moreno, A, Collado Vides, P. (2005). "Comparative studies of transcriptional regulation mechanisms in a group of eight gamma-proteobacterial genomes". Journal Of Molecular Biology. 354(1):184-199. [doi:10.1016/j.jmb.2005.09.037]16236313
2005Palacios de la Lama, R. (2005). "Diseño genómico natural en bacterias". Descubrimientos y Aportaciones Científicas y Humanísticas Mexicanas en el Siglo XX. (0):-.
2005Romero, D, Zertuche, F. (2005). "Grasping the connectivity of random functional graphs". STUD SCI MATH HUNG. 42(1):1-9. [doi:10.1556/SScMath.42.2005.1.1]
2005Le Novere, N, Finney, A, Hucka, M, Bhalla, U, Campagne, F, Collado Vides, P, Crampin, E, Halstead, M, Klipp, E, Mendes, P, Nielsen, P, Sauro, H, Shapiro, B, Snoep, J, Spence, H, Wanner, B. (2005). "Minimum information requested in the annotation of biochemical models (MIRIAM)". Nature Biotechnology. 23(12):1509-1515. [doi:10.1038/nbt1156]16333295
2005Rojas-Jimenez, K, Sohlenkamp, C, Geiger, O, Martínez Romero, M, Werner, D, Vinuesa Fleischmann, P. (2005). "A CIC chloride channel homolog and ornithine-containing membrane lipids of Rhizobium tropici CIAT899 are involved in symbiotic efficiency and acid tolerance". Molecular Plant-Microbe Interactions. 18(11):1175-1185. [doi:10.1094/MPMI-18-1175]16353552
2005Keseler, I, Collado Vides, P, Gama Castro, M, Ingraham, J, Paley, S, Paulsen, I, Peralta Gil, M, Karp, P. (2005). "EcoCyc: A comprehensive database resource for Escherichia coli". Nucleic Acids Research. 33(DATABASE ISS.):334-337. [doi:10.1093/nar/gki108]15608210
2005Flores López, M, Morales Reyes, L, Ávila Casanueva, A, González Zúñiga, V, Bustos Arcos, V, García Alonso, D, Pérez-Tejada Domínguez, Y, Guo, X, Collado Vides, P, Pinero, D, Dávila Ramos, J, Mora Celis, J, Palacios de la Lama, R. (2005). "Diversification of DNA sequences in the symbiotic genome of Rhizobium etli". Journal Of Bacteriology. 187(21):7185-7192. [doi:10.1128/JB.187.21.7185-7192.2005]16237002
2005Janga, S, Collado-Vides, J, Moreno-Hagelsieb, G. (2005). "Nebulon: A system for the inference of functional relationships of gene products from the rearrangement of predicted operons". Nucleic Acids Research. 33(8):2521-2530. [doi:10.1093/nar/gki545]15867197
2004Resendis-Antonio, O, Collado-Vides, J. (2004). "The growth of random networks as a diffusion process". PHYSICA A-STATISTICAL MECHANICS AND ITS APPLICATIONS. 342(3-4):551-560. [doi:10.1016/j.physa.2004.05.037]
2004Martinez, J, Martinez, L, Rosenblueth, M, Silva, J, Martinez-Romero, E. (2004). "How are gene sequence analyses modifying bacterial taxonomy? The case of Klebsiella". INTERNATIONAL MICROBIOLOGY. 7(4):261-268. 15666246
2004Rosenblueth Laguette, M, Martínez Martínez, L, Silva, J, Martínez Romero, M. (2004). "Klebsiella variicola, A Novel Species with Clinical and Plant-Associated Isolates". Systematic And Applied Microbiology. 27(1):27-35. [doi:10.1078/0723-2020-00261]15053318
2004Salgado Osorio, H, Gama Castro, M, Martínez Antonio, A, Díaz Peredo, E, Sánchez Solano, E, Peralta Gil, M, García Alonso, D, Jiménez Jacinto, V, Santos Zavaleta, A, Bonavides Martínez, C, Collado Vides, P. (2004). "RegulonDB (version 4.0): Transcriptional regulation, operon organization and growth conditions in Escherichia coli K-12". Nucleic Acids Research. 32(DATABASE ISS.):303-306. [doi:10.1093/nar/gkh140]14681419
2004Zuniga-Castillo, J, Romero, D, Martinez-Salazar, J. (2004). "The recombination genes addAB are not restricted to gram-positive bacteria: Genetic analysis of the recombination initiation enzymes recF and addAB in Rhizobium etli". Journal Of Bacteriology. 186(23):7905-7913. [doi:10.1128/JB.186.23.7905-7913.2004]15547262
2004Medrano Soto, L, Moreno Hagelsieb, G, Vinuesa Fleischmann, P, Christen, J, Collado Vides, P. (2004). "Successful lateral transfer requires codon usage compatibility between foreign genes and recipient genomes". MOLECULAR BIOLOGY AND EVOLUTION. 21(10):1884-1894. [doi:10.1093/molbev/msh202]15240837
2004Batista, C, Del Pozo, L, Zamudio, F, Contreras Martínez, S, Becerril, B, Wanke, E, Possani, L. (2004). "Proteomics of the venom from the Amazonian scorpion Tityus Cambridgei and the role of prolines on mass spectrometry analysis of toxins". JOURNAL OF CHROMATOGRAPHY B-ANALYTICAL TECHNOLOGIES IN THE BIOMEDICAL AND LIFE SCIENCES. 803(1):55-66. [doi:10.1016/j.jchromb.2003.09.002]15025998
2004Geiger, O, Martínez Morales, F, Sohlenkamp, C, López Lara, I. (2004). "ROLE OF BACTERIAL PHOSPHATIDYLCHOLINE IN SYMBIOTIC AND PATHOGENIC INTERACTIONS". Biology of Molecular Plant-Microbe Interactions. ():423-426.
2004Vargas, M, Encarnacin, S, Girard, M, Reyes, A, Mora, Y, Mora, J. (2004). "Physiological and proteome characterizations of oxidative-stress response in Rhizobium etli during free life and symbiosis with Phaseolus vulgaris.". MOLECULAR & CELLULAR PROTEOMICS. 3(10, S):160-160.
2004. (2004). "CLI: An Open Linguistic Corpus for Engineering". Proceedings of IX Ibero-American Workshop on Artificial Intelligence. ():203-208.
2004Rosenblueth Laguette, M, Martínez Romero, M. (2004). "Rhizobium etli maize populations and their competitivenes for roof colonization". Archives Of Microbiology. 181(5):337-344. [doi:10.1007/s00203-004-0661-9]15024554
2004Oviedo, N, Salgado Osorio, H, Collado Vides, P, Guarneros, G. (2004). "Distribution of minigenes in the bacteriophage lambda chromosome". Gene. 329(1-2):115-124. [doi:10.1016/j.gene.2003.12.031]15033534
2004Costa, J, Martínez Romero, M, Lindblad, P. (2004). "Sequence based data supports a single Nostoc strain in individual coralloid roots of cycads". Fems Microbiology Ecology. 49(3):481-487. [doi:10.1016/j.femsec.2004.05.001]19712296
2004Karp, P, Arnaud, M, Collado-Vides, J, Ingraham, J, Paulsen, I, Saier, M. (2004). "The E. coli EcoCyc database: No longer just a metabolic pathway database". Asm News. 70(1):25-30.
2004Sepulveda, E, Perez-Mendoza, D, Munoz, S, Ramirez-Romero, M, Soto, M, Cervantes, L, Herrera-Cervera, J, Lopez-Lara, I, Geiger, O, Sanuan, J, Brom, S, Romero, D. (2004). "Identification of functional mob regions in Rhizobium etli: Evidence for self-transmissibility of the symbiotic plasmid pRetCFN42d". Journal Of Bacteriology. 186(17):5753-5761. [doi:10.1128/JB.186.17.5753-5761.2004]15317780
2004Perez-Rueda, E, Collado Vides, P, Segovia, L. (2004). "Phylogenetic distribution of DNA-binding transcription factors in bacteria and archaea". COMPUTATIONAL BIOLOGY AND CHEMISTRY. 28(5-6):341-350. [doi:10.1016/j.compbiolchem.2004.09.004]15556475
2004Goris, J, De Vos, P, Caballero-Mellado, J, Park, J, Falsen, E, Quensen, J, Tiedje, J, Vandamme, P. (2004). "Classification of the biphenyl- and polychlorinated biphenyl-degrading strain LB400(T) and relatives as Burkholderia xenovorans sp nov.". International Journal Of Systematic And Evolutionary Microbiology. 54(5):1677-1681. [doi:10.1099/ijs.0.63101-0]15388727
2004Venkova-Canova, T, Soberon, N, Ramirez-Romero, M, Cevallos, M. (2004). "Two discrete elements are required for the replication of a repABC plasmid: an antisense RNA and a stem-loop structure". Molecular Microbiology. 54(5):1431-1444. [doi:10.1111/j.1365-2958.2004.04366.x]15554980
2004Geiger, O, Sohlenkamp, C, Martinez-Morales, F, Gao, J, Zavaleta-Pastor, M, Lopez-Lara, I. (2004). "Regulation of membrane lipid biosynthesis in eubacteria". FASEB JOURNAL. 18(8, S):3-3.
2004Pérez, J, Pazos, R, Frausto, J, Rodríguez, G, Romero, D, Cruz, L. (2004). "A statistical approach for algorithm selection". LECT NOTES COMPUT SC. 3059():417-431. [doi:10.1007/978-3-540-24838-5_31]
2004Vinuesa, P, Silva, C. (2004). "Species delineation and biogeography of symbiotic bacteria associated with cultivated and wild legumes". Biological Resources And Migration. ():143-155.
2004Hernández Lucas, I, Rogel Hernández, M, Segovia, L, Rojas-Jimenez, K, Martínez Romero, M. (2004). "Phylogenetic relationships of Rhizobia based on citrate synthase gene sequences". Systematic And Applied Microbiology. 27(6):703-706. [doi:10.1078/0723202042369893]15612628
2004Reis, V, Estrada-de los Santos, P, Tenorio-Salgado, S, Vogel, J, Stoffels, M, Guyon, S, Mavingui, P, Baldani, V, Schmid, M, Baldani, J, Balandreau, J, Hartmann, A, Caballero-Mellado, J. (2004). "Burkholderia tropica sp nov., a novel nitrogen-fixing, plant-associated bacterium". International Journal Of Systematic And Evolutionary Microbiology. 54(6):2155-2162. [doi:10.1099/ijs.0.02879-0]15545451
2004Janga, S, Moreno-Hagelsieb, G. (2004). "Conservation of adjacency as evidence of paralogous operons". Nucleic Acids Research. 32(18):5392-5397. [doi:10.1093/nar/gkh882]15477389
2004Dunn, M, Araiza, G, Mora, J. (2004). "Biochemical characterization of a Rhizobium etli monovalent cation-stimulated acyl-coenzyme A carboxylase with a high substrate specificity constant for propionyl-coenzyme A". MICROBIOLOGY-SGM. 150(2):399-406. [doi:10.1099/mic.0.26779-0]14766918
2004Sohlenkamp, C, de Rudder, K, Geiger, O. (2004). "Phosphatidylethanolamine Is Not Essential for Growth of Sinorhizobium meliloti on Complex Culture Media". Journal Of Bacteriology. 186(6):1667-1677. [doi:10.1128/JB.186.6.1667-1677.2004]14996797
2004Lamboy, W, Moreno-Hagelsieb, G. (2004). "A new method of solution for the occupancy problem and its application to operon size prediction". JOURNAL OF THEORETICAL BIOLOGY. 227(3):315-322. [doi:10.1016/j.jtbi.2003.11.009]15019498
2004Soberon, N, Venkova-Canova, T, Ramirez-Romero, M, Tellez-Sosa, J, Cevallos, M. (2004). "Incompatibility and the partitioning site of the repABC basic replicon of the symbiotic plasmid from Rhizobium etli". Plasmid. 51(3):203-216. [doi:10.1016/j.plasmid.2004.01.005]15109827
2004Brom Klanner, S, Girard Cuesy, M, Tun Garrido, C, García de los Santos, A, Bustos Arcos, V, González Zúñiga, V, Romero Camarena, D. (2004). "Transfer of the symbiotic plasmid of Rhizobium etli CFN42 requires cointegration with p42a, which may be mediated by site-specific recombination". Journal Of Bacteriology. 186(22):7538-7548. [doi:10.1128/JB.186.22.7538-7548.2004]15516565
2004Encarnacion, S, Garcia, J, Hernandez, M, Vargas, M, Contreras, S, Mora, J. (2004). "Protein expression during biofilm formation in Rhizobium etli and Sinorhizobium meliloti". MOLECULAR & CELLULAR PROTEOMICS. 3(10, S):150-150.
2004Gao, J, Weissenmayer, B, Taylor, A, Thomas-Oates, J, Lopez-Lara, I, Geiger, O. (2004). "Identification of a gene required for the formation of lyso-ornithine lipid, an intermediate in the biosynthesis of ornithine-containing lipids". Molecular Microbiology. 53(6):1757-1770. [doi:10.1111/j.1365-2958.2004.04240.x]15341653
2004Peralta, H, Mora, Y, Salazar, E, Encarnacion, S, Palacios, R, Mora, J. (2004). "Engineering the nifH promoter region and abolishing poly-ß -hydroxybutyrate accumulation in Rhizobium etli enhance nitrogen fixation in symbiosis with Phaseolus vulgaris". Applied And Environmental Microbiology. 70(6):3272-3281. [doi:10.1128/AEM.70.6.3272-3281.2004]15184121
2004Caballero-Mellado, J, Martinez-Aguilar, L, Paredes-Valdez, G, Estrada-de los Santos, P. (2004). "Burkholderia unamae sp nov., an N-2-fixing rhizospheric and endophytic species". International Journal Of Systematic And Evolutionary Microbiology. 54(4):1165-1172. [doi:10.1099/ijs.0.02951-0]15280286
2003Toledo García, I, Lloret y Sánchez, L, Martínez Romero, M. (2003). "Sinorhizobium americanus sp. nov., a New Sinorhizobium species nodulating native Acacia spp. in Mexico". Systematic And Applied Microbiology. 26(1):54-64. [doi:10.1078/072320203322337317]12747410
2003Cordoba, E, Shishkova, S, Vance, C, Hernandez, G. (2003). "Antisense inhibition of NADH glutamate synthase impairs carbon/nitrogen assimilation in nodules of alfalfa (Medicago sativa L.)". PLANT JOURNAL. 33(6):1037-1049. [doi:10.1046/j.1365-313X.2003.01686.x]12631328
2003Uhde-Stone, C, Zinn, K, Ramirez-Yanez, M, Li, A, Vance, C, Allan, D. (2003). "Nylon filter arrays reveal differential gene expression in proteoid roots of white lupin in response to phosphorus deficiency". Plant Physiology. 131(3):1064-1079. [doi:10.1104/pp.102.016881]12644659
2003Vargas, M, Encarnacion, S, Davalos, A, Reyes-Perez, A, Mora, Y, Garcia-de los Santos, A, Brom, S, Moral, J. (2003). "Only one catalase, katG, is detectable in Rhizobium etli, and is encoded along with the regulator OxyR on a plasmid replicon". MICROBIOLOGY-SGM. 149(5):1165-1176. [doi:10.1099/mic.0.25909-0]12724378
2003Martinez-Romero, E. (2003). "Diversity of Rhizobium-Phaseolus vulgaris symbiosis: Overview and perspectives". PLANT AND SOIL. 252(1):11-23. [doi:10.1023/A:1024199013926]
2003Broughton, W, Hernandez, G, Blair, M, Beebe, S, Gepts, P, Vanderleyden, J. (2003). "Beans (Phaseolus spp.) - model food legumes". PLANT AND SOIL. 252(1):55-128. [doi:10.1023/A:1024146710611]
2003Tun-Garrido, C, Bustos, P, Gonzalez, V, Brom, S. (2003). "Conjugative transfer of p42a from Rhizobium etli CFN42, which is required for mobilization of the symbiotic plasmid, is regulated by quorum sensing". Journal Of Bacteriology. 185(5):1681-1692. [doi:10.1128/JB.185.5.1681-1692.2003]12591886
2003Suarez, R, Marquez, J, Shishkova, S, Hernandez, G. (2003). "Overexpression of alfalfa cytosolic glutamine synthetase in nodules and flowers of transgenic Lotus japonicus plants". Physiologia Plantarum. 117(3):326-336. [doi:10.1034/j.1399-3054.2003.00053.x]12654032
2003Perret, X, Kobayashi, H, Collado Vides, P. (2003). "Regulation of expression of symbiotic genes in Rhizobium sp. NGR234". INDIAN JOURNAL OF EXPERIMENTAL BIOLOGY. 41(10):1101-1113. 15242276
2003Jahn, O, Davila, G, Romero, D, Noel, K. (2003). "BacS: An abundant bacteroid protein in Rhizobium etli whose expression ex planta requires nifA". Molecular Plant-Microbe Interactions. 16(1):65-73. [doi:10.1094/MPMI.2003.16.1.65]12580283
2003Silva, C, Vinuesa, P, Eguiarte, L, Martinez-Romero, E, Souza, V. (2003). "Rhizobium etli and Rhizobium gallicum nodulate common bean (Phaseolus vulgaris) in a traditionally managed milpa plot in Mexico: Population genetics and biogeographic implications". Applied And Environmental Microbiology. 69(2):884-893. [doi:10.1128/AEM.69.2.884-893.2003]12571008
2003Silvente, S, Camas, A, Lara Flores, M. (2003). "Heterogeneity of sucrose synthase genes in bean (Phaseolus vulgaris L.): evidence for a nodule-enhanced sucrose synthase gene". Journal Of Experimental Botany. 54(383):749-755. [doi:10.1097/jxb/erg086]12554718
2003Lopez-Lara, I, Sohlenkamp, C, Geiger, O. (2003). "Membrane lipids in plant-associated bacteria: Their biosyntheses and possible functions". Molecular Plant-Microbe Interactions. 16(7):567-579. [doi:10.1094/MPMI.2003.16.7.567]12848422
2003Medina, G, Juarez, K, Diaz, R, Soberon-Chavez, G. (2003). "Transcriptional regulation of pseudomonas Aeruginosa rhlR, encoding a quorum-sensing regulatory protein". MICROBIOLOGY-SGM. 149(11):3073-3081. [doi:10.1099/mic.0.26282-0]14600219
2003Gutiérrez Ríos, R, Rosenblueth, D, Loza, J, Huerta Moreno, A, Glasner, J, Blattner, F, Collado Vides, P. (2003). "Regulatory network of Escherichia coli: Consistency between literature knowledge and microarray profiles". GENOME RESEARCH. 13(11):2435-2443. [doi:10.1101/gr.1387003]14597655
2003Wang, E, Kan, F, Tan, Z, Toledo García, I, Chen, W, Martínez Romero, M. (2003). "Diverse Mesorhizobium plurifarium populations native to Mexican soils". Archives Of Microbiology. 180(6):444-454. [doi:10.1007/s00203-003-0610-z]14576977
2003Martínez Antonio, A, Salgado Osorio, H, Gama Castro, M, Gutiérrez Ríos, R, Jiménez Jacinto, V, Collado Vides, P. (2003). "Environmental Conditions and Transcriptional Regulation in Escherichia coli: A Physiological Integrative Approach". BIOTECHNOLOGY AND BIOENGINEERING. 84(7):743-749. [doi:10.1002/bit.10846]14708114
2003Romero, D, Zertuche, F. (2003). "The asymptotic number of attractors in the random map model". JOURNAL OF PHYSICS A-MATHEMATICAL AND GENERAL. 36(13):3691-3700. [doi:10.1088/0305-4470/36/13/304]
2003Martinez-Antonio, A, Collado-Vides, J. (2003). "Identifying global regulators in transcriptional regulatory networks in bacteria". Current Opinion In Microbiology. 6(5):482-489. [doi:10.1016/j.mib.2003.09.002]14572541
2003Silvente, S, Camas, A, Lara Flores, M. (2003). "Molecular cloning of the cDNA encoding aspartate aminotransferase from bean root nodules and determination of its role in nodule nitrogen metabolism". Journal Of Experimental Botany. 54(387):1545-1551. [doi:10.1093/jxb/erg161]12730270
2003Encarnacion, S, Guzman, Y, Dunn, M, Hernandez, M, Vargas, M, Mora, J. (2003). "Proteome analysis of aerobic and fermentative metabolism in Rhizobium etli CE3". Proteomics. 3(6):1077-1085. [doi:10.1002/pmic.200300427]12833533
2003Guo, X, Flores, M, Mavingui, P, Fuentes, S, Hernandez, G, Davila, G, Palacios, R. (2003). "Natural genomic design in Sinorhizobium meliloti novel genomic architectures". GENOME RESEARCH. 13(8):1810-1817. [doi:10.1101/gr.1260903]12902376
2003Munoz-Rojas, J, Caballero-Mellado, J. (2003). "Population dynamics of Gluconacetobacter diazotrophicus in sugarcane cultivars and its effect on plant growth". Microbial Ecology. 46(4):454-464. [doi:10.1007/s00248-003-0110-3]14722690
2003Snoeck, C, Verreth, C, Hernández Lucas, I, Martínez Romero, M, Vanderleyden, J. (2003). "Identification of a third sulfate activation system in Sinorhizobium sp. strain BR816: The CysDN sulfate activation complex". Applied And Environmental Microbiology. 69(4):2006-2014. [doi:10.1128/AEM.69.4.2006-2014.2003]12676676
2003Djordjevic, M, Chen, H, Natera, S, Van Noorden, G, Menzel, C, Taylor, S, Renard, C, Geiger, O, Weiller, G. (2003). "A global analysis of protein expression profiles in Sinorhizobium meliloti: Discovery of new genes for nodule occupancy and stress adaptation". Molecular Plant-Microbe Interactions. 16(6):508-524. [doi:10.1094/MPMI.2003.16.6.508]12795377
2003Willems, A, Fernandez-Lopez, M, Munoz-Adelantado, E, Goris, J, De Vos, P, Martínez Romero, M, Toro, N, Gillis, M. (2003). "Description of new Ensifer strains from nodules and proposal to transfer Ensifer adhaerens Casida 1982 to Sinorhizobium as Sinorhizobium adhaerens comb. nov. Request for an Opinion". International Journal Of Systematic And Evolutionary Microbiology. 53(4):1207-1217. [doi:10.1099/ijs.0.02264-0]12892151
2003Vinuesa Fleischmann, P, Neumann-Silkow, F, Pacios-Bras, C, Spaink, H, Martínez Romero, M, Werner, D. (2003). "Genetic analysis of a pH-regulated operon from Rhizobium tropici CIAT899 involved in acid tolerance and nodulation competitiveness". Molecular Plant-Microbe Interactions. 16(2):159-168. [doi:10.1094/MPMI.2003.16.2.159]12575750
2003Pérez O., J, Pazos R., R, Romero, D, Santaolaya S., R, Rodriguez O., G, Sosa S., V. (2003). "Adaptive and scalable allocation of data-objects in the web". LECT NOTES COMPUT SC. 2667():134-143. [doi:10.1007/3-540-44839-x_15]
2003Jauregui, R, Abreu-Goodger, C, Moreno-Hagelsieb, G, Collado-Vides, J, Merino, E. (2003). "Conservation of DNA curvature signals in regulatory regions of prokaryotic genes". Nucleic Acids Research. 31(23):6770-6777. [doi:10.1093/nar/gkg882]14627810
2003Martinez-Morales, F, Schobert, M, Lopez-Lara, I, Geiger, O. (2003). "Pathways for phosphatidylcholine biosynthesis in bacteria". MICROBIOLOGY-SGM. 149(12):3461-3471. [doi:10.1099/mic.0.26522-0]14663079
2003Valencia-Cantero, E, Pena-Cabriales, J, Martinez-Romero, E. (2003). "The corrosion effects of sulfate- and ferric-reducing bacterial consortia on steel". GEOMICROBIOLOGY JOURNAL. 20(2):157-169. [doi:10.1080/01490450390193264]
2003Martinez, L, Caballero-Mellaod, J, Orozco, J, Martinez-Romero, E. (2003). "Diazotrophic bacteria associated with banana (Musa spp.)". PLANT AND SOIL. 257(1):35-47. [doi:10.1023/A:1026283311770]
2003Valderrama, B, Oliver, P, Medrano-Soto, A, Vazquez-Duhalt, R. (2003). "Evolutionary and structural diversity of fungal laccases". Antonie Van Leeuwenhoek International Journal of General and Molecular; Microbiology. 84(4):289-299. [doi:10.1023/A:1026070122451]14574106
2003Huerta, A, Collado-Vides, J. (2003). "Sigma70 promoters in Escherichia coli: Specific transcription in dense regions of overlapping promoter-like signals". Journal Of Molecular Biology. 333(2):261-278. [doi:10.1016/j.jmb.2003.07.017]14529615
2003González Zúñiga, V, Bustos Arcos, V, Ramírez Romero, M, Medrano Soto, L, Salgado Osorio, H, Hernández González, I, Hernández Celis, J, Quintero Hernández, V, Moreno Hagelsieb, G, Girard Cuesy, M, Rodríguez Sánchez, O, Flores López, M, Cevallos Gaos, M, Collado Vides, P, Romero Camarena, D, Dávila Ramos, J. (2003). "The mosaic structure of the symbiotic plasmid of Rhizobium etli CFN42 and its relation to other symbiotic genome compartments.". Genome Biology. 4(6):R36-. [doi:10.1186/gb-2003-4-6-r36]12801410
2003Young, J, Kuykendall, L, Martínez Romero, M, Kerr, A, Sawada, H. (2003). "Classification and nomenclature of Agrobacterium and Rhizobium - A reply to Farrand et al. (2003)". International Journal Of Systematic And Evolutionary Microbiology. 53(5):1689-1695. [doi:10.1099/ijs.0.02762-0]13130069
2003Collado Vides, P, Medrano Soto, L, Tusié-Luna, M. (2003). "With the finished human genome in hand, what next?". Genome Biology. 4(7):328-328. [doi:10.1186/gb-2003-4-7-328]12844356
2003Desnoues, N, Lin, M, Guo, X, Ma, L, Carreno-Lopez, R, Elmerich, C. (2003). "Nitrogen fixation genetics and regulation in a pseudomonas Stutzeri strain associated with rice". MICROBIOLOGY-SGM. 149(8):2251-2262. [doi:10.1099/mic.0.26270-0]12904565
2003Sohlenkamp, C, Lopez-Lara, I, Geiger, O. (2003). "Biosynthesis of phosphatidylcholine in bacteria". Progress In Lipid Research. 42(2):115-162. [doi:10.1016/S0163-7827(02)00050-4]12547654
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2002Falcon, L, Escobar-Briones, E, Romero, D. (2002). "Nitrogen fixation patterns displayed by cyanobacterial consortia in Alchichica crater-lake, Mexico". Hydrobiologia. 467(1-3):71-78. [doi:10.1023/A:1014984629985]
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2002Lira-Ruan, V, Ross, E, Sarath, G, Klucas, R, Arredondo-Peter, R. (2002). "Mapping and analysis of a hemoglobin gene family from Oryza sativa". PLANT PHYSIOLOGY AND BIOCHEMISTRY. 40(3):199-202. [doi:10.1016/S0981-9428(02)01365-7]
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2002Garcia-de los Santos, A, Morales, A, Baldoma, L, Clark, S, Brom, S, Yost, C, Hernandez-Lucas, I, Aguilar, J, Hynes, M. (2002). "The glcB locus of Rhizobium leguminosarum VF39 encodes an arabinose-inducible malate synthase". Canadian Journal Of Microbiology. 48(10):922-932. [doi:10.1139/w02-091]12489782
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2001Dunn, M, Araiza, G, Finan, T. (2001). "Cloning and characterization of the pyruvate carboxylase from Sinorhizobium meliloti Rm1021". Archives Of Microbiology. 176(5):355-363. [doi:10.1007/s002030100336]11702077
2001Chichkova, S, Arellano, J, Vance, C, Hernandez, G. (2001). "Transgenic tobacco plants that overexpress alfalfa NADH-glutamate synthase have higher carbon and nitrogen content". Journal Of Experimental Botany. 52(364):2079-2087. [doi:10.1093/jexbot/52.364.2079]11604446
2001Young, J, Kuykendall, L, Martinez-Romero, E, Kerr, A, Sawada, H. (2001). "A revision of Rhizobium Frank 1889, with an emended description of the genus, and the inclusion of all species of Agrobacterium conn 1942 and Allorhizobium undicola de Lajudie et al. 1998 as new combinations: Rhizobium radiobacter, R. rhizogenes, R. rubi, R. undicola and R. vitis". International Journal Of Systematic And Evolutionary Microbiology. 51(1):89-103. [doi:10.1099/00207713-51-1-89]11211278
2001Vilazquez, E, Martinez-Romero, E, Rodriguez-Navarro, D, Trujillo, M, Daza, A, Mateos, P, Martinez-Molina, E, van Berkum, P. (2001). "Characterization of rhizobial isolates of Phaseolus vulgaris by staircase electrophoresis of low-molecular-weight RNA". Applied And Environmental Microbiology. 67(2):1008-1010. [doi:10.1128/AEM.67.2.1008-1010.2001]11157280
2001Fuentes-Ramirez, L, Bustillos-Cristales, R, Tapia-Hernandez, A, Jimenez-Salgado, T, Wang, E, Martinez-Romero, E, Caballero-Mellado, J. (2001). "Novel nitrogen-fixing acetic acid bacteria, Gluconacetobacter johannae sp. nov. and Gluconacetobacter azotocaptans sp. nov., associated with coffee plants". International Journal Of Systematic And Evolutionary Microbiology. 51(4):1305-1314. [doi:10.1099/00207713-51-4-1305]11491326
2001Díaz-Leal, H, Martínez-Bernal, J, Romero, D. (2001). "Dimension of the fixed point set of a nilpotent endomorphism on the flag variety". BOL SOC MAT MEX. 7(1):23-33.
2001Lopez-Lara, I, Geiger, O. (2001). "The nodulation protein NodG shows the enzymatic activity of an 3-oxoacyl-acyl carrier protein reductase". Molecular Plant-Microbe Interactions. 14(3):349-357. [doi:10.1094/MPMI.2001.14.3.349]11277432
2001Gao, J, Terefework, Z, Chen, W, Lindstrom, K. (2001). "Genetic diversity of Rhizobia isolated from Astragalus adsurgens growing in different geographical regions of China". JOURNAL OF BIOTECHNOLOGY. 91(2-3, SI):155-168. [doi:10.1016/S0168-1656(01)00337-6]11566387
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2001Moreno-Hagelsieb, G, Trevino, V, Pérez-Rueda, E, Smith, T, Collado-Vides, J. (2001). "Transcription unit conservation in the three domains of life: A perspective from Escherichia coli". TRENDS IN GENETICS. 17(4):175-177. [doi:10.1016/S0168-9525(01)02241-7]11275307
2001Ramirez-Santos, J, Collado-Vides, J, Garcia-Varela, M, Gomez-Eichelmann, M. (2001). "Conserved regulatory elements of the promoter sequence of the gene rpoH of enteric bacteria". Nucleic Acids Research. 29(2):380-386. [doi:10.1093/nar/29.2.380]11139607
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2001Minder, A, de Rudder, K, Narberhaus, F, Fischer, H, Hennecke, H, Geiger, O. (2001). "Phosphatidylcholine levels in Bradyrhizobium japonicum membranes are critical for an efficient symbiosis with the soybean host plant". Molecular Microbiology. 39(5):1186-1198. [doi:10.1046/j.1365-2958.2001.02325.x]11251836
2001Fuentes, S, Allen, D, Ortiz-Lopez, A, Hernandez, G. (2001). "Over-expression of cytosolic glutamine synthetase increases photosynthesis and growth at low nitrogen concentrations". Journal Of Experimental Botany. 52(358):1071-1081. [doi:10.1093/jexbot/52.358.1071]11432923
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2001Batista, S, Catalan, A, Hernandez-Lucas, I, Martinez-Romero, E, Aguilar, O, Martinez-Drets, G. (2001). "Identification of a system that allows a Rhizobium tropici dctA mutant to grow on succinate, but not on other C4-dicarboxylates". Canadian Journal Of Microbiology. 47(6):509-518. [doi:10.1139/cjm-47-6-509]11467726
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2001Rogel Hernández, M, Hernández Lucas, I, Kuykendall, L, Balkwill, D, Martínez Romero, M. (2001). "Nitrogen-Fixing Nodules with Ensifer adhaerens Harboring Rhizobium tropici Symbiotic Plasmids". Applied And Environmental Microbiology. 67(7):3264-3268. [doi:10.1128/AEM.67.7.3264-3268.2001]11425750
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2001Gutierrez-Zamora, M, Martinez-Romero, E. (2001). "Natural endophytic association between Rhizobium etli and maize (Zea mays L.)". JOURNAL OF BIOTECHNOLOGY. 91(2-3):117-126. [doi:10.1016/S0168-1656(01)00332-7]11566384
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2000Tapia-Hernandez, A, Bustillos-Cristales, M, Jimenez-Salgado, T, Caballero-Mellado, J, Fuentes-Ramirez, L. (2000). "Natural endophytic occurrence of Acetobacter diazotrophicus in pineapple plants". Microbial Ecology. 39(1):49-55. [doi:10.1007/s002489900190]10790517
2000Martinez-Salazar, J, Romero, D. (2000). "Role of the ruvB gene in homologous and homeologous recombination in Rhizobium etli". Gene. 243(1-2):125-131. [doi:10.1016/S0378-1119(99)00548-X]10675620
2000Sohlenkamp, C, Shelden, M, Howitt, S, Udvardi, M. (2000). "Characterization of Arabidopsis AtAMT2, a novel ammonium transporter in plants". FEBS LETTERS. 467(2-3):273-278. [doi:10.1016/S0014-5793(00)01153-4]10675553
2000González-Pasayo, R, Martínez Romero, M. (2000). "Multiresistance genes of Rhizobium etli CFN42". Molecular Plant-Microbe Interactions. 13(5):572-577. [doi:10.1094/MPMI.2000.13.5.572]10796024
2000Weissenmayer, B, Geiger, O, Benning, C. (2000). "Disruption of a gene essential for sulfoquinovosyldiacylglycerol biosynthesis in Sinorhizobium meliloti has no detectable effect on root nodule symbiosis". Molecular Plant-Microbe Interactions. 13(6):666-672. [doi:10.1094/MPMI.2000.13.6.666]10830266
2000Ramirez-Romero, M, Soberon, N, Perez-Oseguera, A, Tellez-Sosa, J, Cevallos, M. (2000). "Structural elements required for replication and incompatibility of the Rhizobium etli symbiotic plasmid". Journal Of Bacteriology. 182(11):3117-3124. [doi:10.1128/JB.182.11.3117-3124.2000]10809690
2000Sohlenkamp, C, de Rudder, K, Rohrs, V, Lopez-Lara, I, Geiger, O. (2000). "Cloning and characterization of the gene for phosphatidylcholine synthase". JOURNAL OF BIOLOGICAL CHEMISTRY. 275(25):18919-18925. [doi:10.1074/jbc.M000844200]10858449
2000Brom, S, Garcia-de los Santos, A, Cervantes, L, Palacios, R, Romero, D. (2000). "In Rhizobium etli symbiotic plasmid transfer, nodulation competitivity and cellular growth require interaction among different replicons". Plasmid. 44(1):34-43. [doi:10.1006/plas.2000.1469]10873525
2000Castillo, A, Taboada, H, Mendoza, A, Valderrama, B, Encarnacion, S, Mora, J. (2000). "Role of GOGAT in carbon and nitrogen partitioning in Rhizobium etli". MICROBIOLOGY-SGM. 146(7):1627-1637. [doi:10.1099/00221287-146-7-1627]10878127
2000Flores, M, Mavingui, P, Perret, X, Broughton, W, Romero, D, Hernandez, G, Davila, G, Palacios, R. (2000). "Prediction, identification, and artificial selection of DNA rearrangements in Rhizobium: Toward a natural genomic design". PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 97(16):9138-9143. [doi:10.1073/pnas.97.16.9138]10922070
2000Schoenbeck, M, Temple, S, Trepp, G, Blumenthal, J, Samac, D, Gantt, J, Hernandez, G, Vance, C. (2000). "Decreased NADH glutamate synthase activity in nodules and flowers of alfalfa (Medicago sativa L.) transformed with an antisense glutamate synthase transgene". Journal Of Experimental Botany. 51(342):29-39. [doi:10.1093/jexbot/51.342.29]10938793
2000Valencia-Morales, E, Romero, D. (2000). "Recombination enhancement by replication (RER) in Rhizobium etli". Genetics. 154(3):971-983. 10757747
2000Lira-Ruan K., Sarath G., Klucas R.V., Arredondo-Peter R.. (2000). "Characterization of leghemoglobin from a mimosoid legume, Leucaena esculenta, root nodules". Revista Brasileira de Fisiologia Vegetal. 12(1):37-44.
2000Perez-Rueda, E, Collado-Vides, J. (2000). "The repertoire of DNA-binding transcriptional regulators in Escherichia coli K-12". Nucleic Acids Research. 28(8):1838-1847. [doi:10.1093/nar/28.8.1838]10734204
2000Martinez-Romero, E, Wang, E, Merino, A, Caballero-Mellado, J, Rogel, M, Gandara, B, Toledo, I, Martinez-Iomero, J. (2000). "Ribosomal gene based phylogenies on trial: The case of Rhizobium and related genera". Biology Of Plant-Microbe Interactions, Vol 2. ():59-64.
2000Salgado, H, Santos-Zavaleta, A, Gama-Castro, S, Millan-Zarate, D, Blattner, F, Collado-Vides, J. (2000). "RegulonDB (version 3.0): Transcriptional regulation and operon organization in Escherichia coli K-12". Nucleic Acids Research. 28(1):65-67. [doi:10.1093/nar/28.1.65]10592182
2000Strainic, M, Sullivan, J, Collado-Vides, J, deHaseth, P. (2000). "Promoter interference in a bacteriophage lambda control region: Effects of a range of interpromoter distances". Journal Of Bacteriology. 182(1):216-220. [doi:10.1128/JB.182.1.216-220.2000]10613884
2000Cevallos Gaos, M. (2000). "Armas biológicas". ¿Cómo ves?. 15():10-14.
2000Perez-Rueda, E, Collado-Vides, J. (2000). "The repertoire of DNA-binding transcriptional regulators in Escherichia coli K-12". Nucleic Acids Research. 28(8):1838-1847. [doi:10.1093/nar/28.8.1838]10734204
2000van Heiden, J, Rios, A, Collado-Vides, J. (2000). "Discovering regulatory elements in non-coding sequences by analysis of spaced dyads". Nucleic Acids Research. 28(8):1808-1818. [doi:10.1093/nar/28.8.1808]10734201
2000López-Lara, I, Geiger, O. (2000). "Expression and purification of four different rhizobial acyl carrier proteins". MICROBIOLOGY-SGM. 146(4):839-849. [doi:10.1099/00221287-146-4-839]10784042
1999Salgado, H, Santos, A, Garza-Ramos, U, van Helden, J, Diaz, E, Collado-Vides, J. (1999). "RegulonDB (version 2.0): A database on transcriptional regulation in Escherichia coli". Nucleic Acids Research. 27(1):59-60. [doi:10.1093/nar/27.1.59]9847141
1999Barrón, C, Gómez, S, Romero, D, Saavedra, A. (1999). "A genetic algorithm for Lennard-Jones atomic clusters". Applied Mathematics Letters. 12(7):85-90. [doi:10.1016/S0893-9659(99)00106-8]
1999Romero, D, Barrón, C, Gómez, S. (1999). "The optimal geometry of Lennard-Jones clusters: 148-309". COMPUT PHYS COMMUN. 123(1-3):87-96. [doi:10.1016/s0010-4655(99)00259-3]
1999Thieffry, D, Romero, D. (1999). "The modularity of biological regulatory networks.". Biosystems. 50(1):49-59. [doi:10.1016/s0303-2647(98)00087-2]10235650
1999Castillo, M, Flores, M, Mavingui, P, Martinez-Romero, E, Palacios, R, Hernandez, G. (1999). "Increase in alfalfa nodulation, nitrogen fixation, and plant growth by specific DNA amplification in Sinorhizobium meliloti". Applied And Environmental Microbiology. 65(6):2716-2722. [doi:10.1128/aem.65.6.2716-2722.1999]10347066
1999Soberon, M, Lopez, O, Morera, C, Girard, M, Tabche, M, Miranda, J. (1999). "Enhanced nitrogen fixation in a Rhizobium etli ntrC mutant that overproduces the Bradyrhizobium japonicum symbiotic terminal oxidase cbb(3)". Applied And Environmental Microbiology. 65(5):2015-2019. 10223993
1999Caballero-Mellado, J, Martinez-Romero, E. (1999). "Soil fertilization limits the genetic diversity of Rhizobium in bean nodules". Symbiosis. 26(2):111-121.
1999Wang, E, Martinez-Romero, J, Martinez-Romero, E. (1999). "Genetic diversity of Rhizobia from Leucaena leucocephala nodules in Mexican soils". MOLECULAR ECOLOGY. 8(5):711-724. [doi:10.1046/j.1365-294X.1999.00608.x]
1999Fuentes-Ramirez, L, Caballero-Mellado, J, Sepulveda, J, Martinez-Romero, E. (1999). "Colonization of sugarcane by Acetobacter diazotrophicus is inhibited by high N-fertilization". Fems Microbiology Ecology. 29(2):117-128. [doi:10.1016/S0168-6496(98)00125-1]
1999de Rudder, K, Sohlenkamp, C, Geiger, O. (1999). "Plant-exuded choline is used for rhizobial membrane lipid biosynthesis by phosphatidylcholine synthase". JOURNAL OF BIOLOGICAL CHEMISTRY. 274(28):20011-20016. [doi:10.1074/jbc.274.28.20011]10391951
1999Wang, E, van Berkum, P, Sui, X, Beyene, D, Chen, W, Martinez-Romero, E. (1999). "Diversity of Rhizobia associated with Amorpha fruticosa isolated from Chinese soils and description of Mesorhizobium amorphae sp. nov.". INTERNATIONAL JOURNAL OF SYSTEMATIC BACTERIOLOGY. 49(1):51-65. [doi:10.1099/00207713-49-1-51]10028247
1999Herrera-Cervera, J, Caballero-Mellado, J, Laguerre, G, Tichy, H, Requena, N, Amarger, N, Martinez-Romero, E, Olivares, J, Sanjuan, J. (1999). "At least five rhizobial species nodulate Phaseolus vulgaris in a Spanish soil". Fems Microbiology Ecology. 30(1):87-97. [doi:10.1016/S0168-6496(99)00044-6]
1999Romero, D, Martinez-Salazar, J, Ortiz, E, Rodriguez, C, Valencia-Morales, E. (1999). "Repeated sequences in bacterial chromosomes and plasmids: A glimpse from sequenced genomes". Research In Microbiology. 150(9-10):735-743. [doi:10.1016/S0923-2508(99)00119-9]10673011
1999Wang, E, Roel, M, Garcia-de los Santos, A, Martinez-Romero, J, Cevallos, M, Martinez-Romero, E. (1999). "Rhizobium etli bv. mimosae, a novel biovar isolated from Mimosa affinis". INTERNATIONAL JOURNAL OF SYSTEMATIC BACTERIOLOGY. 49(4):1479-1491. [doi:10.1099/00207713-49-4-1479]10555329
1999Laeremans, T, Snoeck, C, Marien, J, Verreth, C, Martínez Romero, M, Prome, J, Vanderleyden, J. (1999). "Phaseolus vulgaris recognizes Azorhizobium caulinodans nod factors with a variety of chemical substituents". Molecular Plant-Microbe Interactions. 12(9):820-824. [doi:10.1094/MPMI.1999.12.9.820]10494633
1999Brom Klanner, S, Romero Camarena, D. (1999). "Plasmid biology 98: international symposium on plasmid biology". Plasmid. 41(2):141-177. 10087219
1999Corvera Poire, A, Prome, D, Prome, J, Martínez Romero, M, Romero Camarena, D. (1999). "The nolL gene from Rhizobium etli determines nodulation efficiency by mediating the acetylation of the fucosyl residue in the nodulation factor". Molecular Plant-Microbe Interactions. 12(3):236-246. [doi:10.1094/MPMI.1999.12.3.236]10065560
1999Collado Vides, P, Hofestadt, R, Mavrovouniotis, M, Michal, G. (1999). "Modeling and simulation of gene regulation and metabolic pathways". Biosystems. 49(1):79-82. [doi:10.1016/S0303-2647(98)00081-1]10091975
1999Ramirez, M, Valderrama, B, Arredondo-Peter, R, Soberon, M, Mora, J, Hernandez, G. (1999). "Rhizobium etli genetically engineered for the heterologous expression of Vitreoscilla sp. hemoglobin: Effects on free-living and symbiosis". Molecular Plant-Microbe Interactions. 12(11):1008-1015. [doi:10.1094/MPMI.1999.12.11.1008]
1999Cevallos Gaos, M. (1999). "La Peste, ayer y hoy". ¿Cómo ves?. 12():22-26.
1999Moreno-Hagelsieb, G, Gomez-Puyou, A, Soberon, X. (1999). "Escherichia coli TEM1 beta-lactamase in CTAB reverse micelles: exchange/diffusion-limited catalysis". FEBS LETTERS. 459(1):111-114. [doi:10.1016/S0014-5793(99)01228-4]10508927
1999Caballero-Mellado, J, Lopez-Reyes, L, Bustillos-Cristales, R. (1999). "Presence of 16S rRNA genes in multiple replicons in Azospirillum brasilense". Fems Microbiology Letters. 178(2):283-288. [doi:10.1111/j.1574-6968.1999.tb08689.x]
1999Tan, Z, Wang, E, Peng, G, Zhu, M, Martinez-Romero, E, Chen, W. (1999). "Characterization of bacteria isolated from wild legumes in the north- western regions of China". INTERNATIONAL JOURNAL OF SYSTEMATIC BACTERIOLOGY. 49(4):1457-1469. [doi:10.1099/00207713-49-4-1457]10555327
1999Phillips, D, Joseph, C, Yang, G, Martinez-Romero, E, Sanborn, J, Volpin, H. (1999). "Identification of lumichrome as a Sinorhizobium enhancer of alfalfa root respiration and shoot growth". PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 96(22):12275-12280. [doi:10.1073/pnas.96.22.12275]10535912
1998Vasquez-Arroyo, J, Sessitsch, A, Martinez, E, Pena-Cabriales, J. (1998). "Nitrogen fixation and nodule occupancy by native strains of Rhizobium on different cultivars of common bean (Phaseolus vulgaris L.)". PLANT AND SOIL. 204(1):147-154. [doi:10.1023/A:1004399531966]
1998Laeremans, T, Martinez-Romero, E, Vanderleyden, J. (1998). "Isolation and sequencing of a second Rhizobium tropici CFN299 genetic locus that contains genes homologous to amino acid sulphate activation genes". Dna Sequence. 9(1):65-70. [doi:10.3109/10425179809050027]9773278
1998Encarnacion, S, Calderon, J, Gelbard, A, Cooper, A, Mora, J. (1998). "Glutamine biosynthesis and the utilization of succinate and glutamine by Rhizobium etli and Sinorhizobium meliloti". MICROBIOLOGY-SGM. 144(9):2629-2638. [doi:10.1099/00221287-144-9-2629]9782512
1998Perez-Ramirez, N, Rogel, M, Wang, E, Castellanos, J, Martinez-Romero, E. (1998). "Seeds of Phaseolus vulgaris bean carry Rhizobium etli". Fems Microbiology Ecology. 26(4):289-296. [doi:10.1016/S0168-6496(98)00043-9]
1998Rosenblueth, M, Hynes, M, Martinez-Romero, E. (1998). "Rhizobium tropici teu genes involved in specific uptake of Phaseolus vulgaris bean-exudate compounds". MOLECULAR & GENERAL GENETICS. 258(6):587-598. [doi:10.1007/s004380050772]9671027
1998Rodriguez, C, Romero, D. (1998). "Multiple recombination events maintain sequence identity among members of the nitrogenase multigene family in Rhizobium etli". Genetics. 149(2):785-794. 9611191
1998Mavingui, P, Laeremans, T, Flores, M, Romero, D, Martinez-Romero, E, Palacios, R. (1998). "Genes essential for nod factor production and nodulation are located on a symbiotic amplicon (AMPRtrCFN299pc60) in Rhizobium tropici". Journal Of Bacteriology. 180(11):2866-2874. [doi:10.1128/JB.180.11.2866-2874.1998]9603874
1998Mendoza, A, Valderrama, B, Leija, A, Mora, J. (1998). "nifA-dependent expression of glutamate dehydrogenase in Rhizobium etli modifies nitrogen partitioning during symbiosis". Molecular Plant-Microbe Interactions. 11(2):83-90. [doi:10.1094/MPMI.1998.11.2.83]9450332
1998Hernandez-Sanchez, J, Valadez, J, Herrera, J, Ontiveros, C, Guarneros, G. (1998). "lambda bar minigene-mediated inhibition of protein synthesis involves accumulation of peptidyl-tRNA and starvation for tRNA". EMBO JOURNAL. 17(13):3758-3765. [doi:10.1093/emboj/17.13.3758]9649445
1998Huerta, A, Salgado, H, Thieffry, D, Collado-Vides, J. (1998). "RegulonDB: A database on transcriptional regulation in Escherichia coli". Nucleic Acids Research. 26(1):55-59. [doi:10.1093/nar/26.1.55]9399800
1998Collado-Vides, J, Gutierrez-Rios, R, Bel-Enguix, G. (1998). "Networks of transcriptional regulation encoded in a grammatical model". Biosystems. 47(1-2):103-118. [doi:10.1016/S0303-2647(98)00016-1]9715754
1998Thieffry, D, Salgado, H, Huerta, A, Collado-Vides, J. (1998). "Prediction of transcriptional regulatory sites in the complete genome sequence of Escherichia coli K-12". Bioinformatics. 14(5):391-400. [doi:10.1093/bioinformatics/14.5.391]9682052
1998Dunn, M. (1998). "Tricarboxylic acid cycle and anaplerotic enzymes in Rhizobia". Fems Microbiology Reviews. 22(2):105-123. [doi:10.1016/S0168-6445(98)00010-2]9729766
1998Mandon, K, Michel-Reydellet, N, Encarnacion, S, Kaminski, P, Leija, A, Cevallos, M, Elmerich, C, Mora, J. (1998). "Poly-ß-hydroxybutyrate turnover in Azorhizobium caulinodans is required for growth and affects nifA expression". Journal Of Bacteriology. 180(19):5070-5076. [doi:10.1128/JB.180.19.5070-5076.1998]9748438
1998Flores, M, Mavingui, P, Girard, L, Perret, X, Broughton, W, Martinez-Romero, E, Davila, G, Palacios, R. (1998). "Three replicons of Rhizobium sp. strain NGR234 harbor symbiotic gene sequences". Journal Of Bacteriology. 180(22):6052-6053. [doi:10.1128/JB.180.22.6052-6053.1998]9811668
1998Sievers, M, Schlegel, H, Caballero-Mellado, J, Dobereiner, J, Ludwig, W. (1998). "Phylogenetic identification of two major nitrogen-fixing bacteria associated with sugarcane". Systematic And Applied Microbiology. 21(4):505-508. [doi:10.1016/S0723-2020(98)80062-3]9924818
1998Arredondo-Peter, R, Hargrove, M, Moran, J, Sarath, G, Klucas, R. (1998). "Plant hemoglobins". Plant Physiology. 118(4):1121-1125. [doi:10.1104/pp.118.4.1121]9847086
1998Thieffry Jacot-Descombes, D, Huerta Moreno, A, Pérez Rueda, E, Collado Vides, P. (1998). "From specific gene regulation to genomic networks: A global analysis of transcriptional regulation in Escherichia coli". Bioessays. 20(5):433-440. <a target="_blank" href="http://dx.doi.org/10.1002/(SICI)1521-1878(199805)20:53.0.CO;2-2">[doi:10.1002/(SICI)1521-1878(199805)20:53.0.CO;2-2]9670816
1998van Helden, J, Andre, B, Collado Vides, P. (1998). "Extracting regulatory sites from the upstream region of yeast genes by computational analysis of oligonucleotide frequencies". Journal Of Molecular Biology. 281(5):827-842. [doi:10.1006/jmbi.1998.1947]9719638
1998Wang, E, van Berkum, P, Beyene, D, Sui, X, Dorado, O, Chen, W, Martinez-Romero, E. (1998). "Rhizobium huautlense sp. nov., a symbiont of Sesbania herbacea that has a close phylogenetic relationship with Rhizobium galegae". INTERNATIONAL JOURNAL OF SYSTEMATIC BACTERIOLOGY. 48(3):687-699. [doi:10.1099/00207713-48-3-687]9734023
1998Pérez Rueda, E, Gralla, J, Collado Vides, P. (1998). "Genomic position analyses and the transcription machinery". Journal Of Molecular Biology. 275(2):165-170. [doi:10.1006/jmbi.1997.1465]9466899
1998Ludwig, W, Amann, R, Martinez-Romero, E, Schonhuber, W, Bauer, S, Neef, A, Schleifer, K. (1998). "rRNA based identification and detection systems for Rhizobia and other bacteria". PLANT AND SOIL. 204(1):1-19. [doi:10.1023/A:1004350708767]
1998Martinez-Romero, E, Hernandez-Lucas, I, Pena-Cabriales, J, Castellanos, J. (1998). "Symbiotic performance of some modified Rhizobium etli strains in assays with Phaseolus vulgaris beans that have a high capacity to fix N2". PLANT AND SOIL. 204(1):89-94. [doi:10.1023/A:1004383028331]
1998Olsthoorn, M, López Lara, I, Petersen, B, Bock, K, Haverkamp, J, Spaink, H, Thomas Oates, J. (1998). "Novel branched Nod factor structure results from -(1 3) fucosyl transferase activity: the major lipo-chitin oligosaccharides from Mesorhizobium loti strain NZP2213 bear an -(1 3) fucosyl subtituent on a nonterminal backbone residue". Biochemistry. 37(25):9024-9032.
1997Thieffry Jacot-Descombes, D, Rosenblueth, D, Huerta Moreno, A, Salgado Osorio, H, Collado Vides, P. (1997). "Definite-clause grammars for the analysis of CIS-regulatory regions in E. coli.". Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing. ():441-452. 9390313
1997Calderón, J, Olvera, L, Martinez, L, Davila, G. (1997). "A Neurospora crassa mutant altered in the regulation of L-amino acid oxidase". MICROBIOLOGY-SGM. 143(6):1969-1974. [doi:10.1099/00221287-143-6-1969]9202472
1997Tan, Z, Xu, X, Wang, E, Gag, J, MartinezRomero, E, Chen, W. (1997). "Phylogenetic and genetic relationships of Mesorhizobium tianshanense and related Rhizobia". INTERNATIONAL JOURNAL OF SYSTEMATIC BACTERIOLOGY. 47(3):874-879. [doi:10.1099/00207713-47-3-874]9226921
1997Jiménez-Salgado, T, FuentesRamirez, L, Tapia-Hernández, A, Mascarua-Esparza, M, Martinez-Romero, E, CaballeroMellado, J. (1997). "Coffea arabica L., a new host plant for Acetobacter diazotrophicus, and isolation of other nitrogen-fixing acetobacteria". Applied And Environmental Microbiology. 63(9):3676-3683. [doi:10.1128/AEM.63.9.3676-3683.1997]9293018
1997Romero Camarena, D, Palacios de la Lama, R. (1997). "Gene amplification and genomic plasticity in prokaryotes". Annual Review of Genetics. 31():91-111. [doi:10.1146/annurev.genet.31.1.91]9442891
1997Mavingui Malonda, A, Flores López, M, Romero Camarena, D, Martínez Romero, M, Palacios de la Lama, R. (1997). "Generation of Rhizobium Strains with Improved Symbiotic Properties by Random Dna Amplification (RDA)". Nature Biotechnology. 15(6):564-569. [doi:10.1038/nbt0697-564]9181580
1997Dunn, M, Araiza, G, Cevallos, M, Mora, J. (1997). "Regulation of pyruvate carboxylase in Rhizobium etli". Fems Microbiology Letters. 157(2):301-306. [doi:10.1016/S0378-1097(97)00491-6]9435112
1997Quinto, C, Wijfjes, A, Bloemberg, G, Blok-Tip, L, López-Lara, I, Lugtenberg, B, Thomas-Oates, J, Spaink, H. (1997). "Bacterial nodulation protein nodZ is a chitin oligosaccharide fucosyltransferase which can also recognize related substrates of animal origin". PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 94(9):4336-4341. [doi:10.1073/pnas.94.9.4336]9113990
1997Ontiveros, C, Valadez, J, Hernandez, J, Guarneros, G. (1997). "Inhibition of Escherichia coli protein synthesis by abortive translation of phage lambda minigenes". Journal Of Molecular Biology. 269(2):167-175. [doi:10.1006/jmbi.1997.1017]9191062
1997Collado-Vides, J, Huerta, A, Klose, K. (1997). "Three models of gene regulation in E. coli". LECT NOTES COMPUT SC. 1278():72-78.
1997Spaink, H, Bakkers, J, Bladergroen, M, Bloemberg, G, Dandal, I, Díaz, C, Blok Tip, L, Gisel, A, Harteveld, M, López Lara, I, Kafetzopoulos, D, Kamst, E, Kijne, J, Meijer, D, Lugtenberg, B, Ovtsyna, A, Potrykus, I, Quaedvlieg, N, Quinto, C, Ritsema, T, Sautter, C, Schlaman, H, Thomas Oates, J, van Boom, J, van der Drift, K, van der Marel, G, van Leeuwen, S, Veldhuis, A, Wijfjes, A. (1997). "The molecular basis of host specificity of Rhizobia". Biology of plant-microbe interactions: Proceedings of the 8th. International Symposium on Molecular Plant-Microbr Interactions, Knoxville, Tennessee, july 14-19, 1996. 1():299-306.
1997Thieffry, D. (1997). "Contributions of the ''Rouge-Cloitre group'' to the notion of ''messenger RNA''". HISTORY AND PHILOSOPHY OF THE LIFE SCIENCES. 19(1):89-111. 9284644
1997Barrón, C, Gómez, S, Romero, D. (1997). "Lower energy icosahedral atomic clusters with incomplete core". Applied Mathematics Letters. 10(5):25-28. [doi:10.1016/S0893-9659(97)00078-5]
1997Romero, D, Sánchez-Flores, A. (1997). "Omnipotence in stretchable two-dimensional scaling". MATH SOC SCI. 33(1):1-21. [doi:10.1016/S0165-4896(96)00817-7]
1997RamirezRomero, M, Bustos, P, Girard, L, Rodriguez, O, Cevallos, M, Davila, G. (1997). "Sequence, localization and characteristics of the replicator region of the symbiotic plasmid of Rhizobium etli". MICROBIOLOGY-SGM. 143(8):2825-2831. [doi:10.1099/00221287-143-8-2825]9274036
1997AguilarGaytan, R, Cerbon, M, Cevallos, M, Lizano, M, Huberman, A. (1997). "Sequence of a cDNA encoding the molt-inhibiting hormone from the Mexican crayfish Procambarus bouvieri (Crustacea, Decapoda)". ASIA-PACIFIC JOURNAL OF MOLECULAR BIOLOGY AND BIOTECHNOLOGY. 5(1):51-55.
1997Chichkova, S, Arellano, J, Svoboda, S, Hernandez, G. (1997). "Ectopic overexpression of NADH-glutamate synthase in transgenic tobacco modifies plant response to excess of ammonium.". Plant Physiology. 114(3, S):911-911.
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