Publications

YearPublicationPMID
2022Brazales-Cevallos, D.K., Romero-Contreras, Y.J., Vences-Guzmán, M.Á., Torres, M., Aviles-Baltazar, N.Y., Sohlenkamp, C., Serrano, M.. (2022). "Transcriptional characterization of the biostimulant effect of Moringa oleifera leaf extracts using Arabidopsis thaliana as a model.". S AFR J BOT. 144():250-256. [doi:10.1016/j.sajb.2021.09.011]
2021Lithgow-Serrano O, Cornelius J, Kanjirangat V, Méndez-Cruz CF, Rinaldi F. (2021). "Improving classification of low-resource COVID-19 literature by using Named Entity Recognition.". Genomics & informatics. 19(3):e22-. [doi:10.5808/gi.21018]34638169
2021Ayra, L., Reyero-Saavedra, M.d.R., Isidra-Arellano, M.C., Lozano, L., Ramírez, M., Leija, A., Fuentes, S.I., Girard, L., Valdés-López, O., Hernández, G.. (2021). "Control of the Rhizobia Nitrogen-Fixing Symbiosis by Common Bean MADS-Domain/AGL Transcription Factors.". Frontiers In Plant Science. 12():-. [doi:10.3389/fpls.2021.679463]34163511
2021Geiger, O., Sohlenkamp, C., Vera-Cruz, D., Medeot, D.B., Martínez-Aguilar, L., Sahonero-Canavesi, D.X., Weidner, S., Pühler, A., López-Lara, I.M.. (2021). "ExoS/ChvI Two-Component Signal-Transduction System Activated in the Absence of Bacterial Phosphatidylcholine.". Frontiers In Plant Science. 12():-. [doi:10.3389/fpls.2021.678976]34367203
2021Van Cauwenberghe, J., Santamaría, R.I., Bustos, P., Juárez, S., Ducci, M.A., Figueroa Fleming, T., Etcheverry, A.V., González, V.. (2021). "Spatial patterns in phage-Rhizobium coevolutionary interactions across regions of common bean domestication.". ISME JOURNAL. 15(7):2092-2106. [doi:10.1038/s41396-021-00907-z]33558688
2021Escorcia-Rodríguez, J.M., Tauch, A., Freyre-González, J.A.. (2021). "Corynebacterium glutamicum Regulation beyond Transcription: Organizing Principles and Reconstruction of an Extended Regulatory Network Incorporating Regulations Mediated by Small RNA and Protein-Protein Interactions.". Microorganisms. 9(7):-. [doi:10.3390/microorganisms9071395]34203422
2021Sohlenkamp, C.. (2021). "Crossing the lipid divide.". JOURNAL OF BIOLOGICAL CHEMISTRY. 297(1):-. [doi:10.1016/j.jbc.2021.100859]34097872
2021Mateo-Estrada, V., Fernández-Vázquez, J.L., Moreno-Manjón, J., Hernández-González, I.L., Rodríguez-Noriega, E., Morfín-Otero, R., Alcántar-Curiel, M.D., Castillo-Ramírez, S.. (2021). "Accessory Genomic Epidemiology of Cocirculating Acinetobacter baumannii Clones.". mSystems. 6(4):e0062621-. [doi:10.1128/mSystems.00626-21]34282943
2021Soto, Maria J., Lopez-Lara, Isabel M., Geiger, Otto, Romero-Puertas, Maria C., van Dillewijn, Pieter. (2021). "Rhizobial Volatiles: Potential New Players in the Complex Interkingdom Signaling With Legumes.". Frontiers In Plant Science. 12():-. [doi:10.3389/fpls.2021.698912]34239533
2021Degli Esposti, Mauro, Moya-Beltran, Ana, Quatrini, Raquel, Hederstedt, Lars. (2021). "Respiratory Heme A-Containing Oxidases Originated in the Ancestors of Iron-Oxidizing Bacteria.". Frontiers in Microbiology. 12():-. [doi:10.3389/fmicb.2021.664216]34211444
2021Matus-Acuña, V., Caballero-Flores, G., Martínez-Romero, E.. (2021). "The influence of maize genotype on the rhizosphere eukaryotic community.". Fems Microbiology Ecology. 97(6):-. [doi:10.1093/femsec/fiab066]33930111
2021Ortiz-Hernández, M.L., Gama-Martínez, Y., Fernández-López, M., Castrejón-Godínez, M.L., Encarnación, S., Tovar-Sánchez, E., Salazar, E., Rodríguez, A., Mussali-Galante, P.. (2021). "Transcriptomic analysis of Burkholderia cenocepacia CEIB S5-2 during methyl parathion degradation.". ENVIRON SCI POLLUT R. 28(31):42414-42431. [doi:10.1007/s11356-021-13647-6]33813711
2021Martínez-Méndez, R., Camacho-Hernández, D.A., Sulvarán-Guel, E., Zamorano-Sánchez, D.. (2021). "A Trigger Phosphodiesterase Modulates the Global c-di-GMP Pool, Motility, and Biofilm Formation in Vibrio parahaemolyticus.". Journal Of Bacteriology. 203(13):e0004621-. [doi:10.1128/JB.00046-21]33846117
2021Batista-Oliveira, J.S., Formey, D., Torres, M., Aragón, W., Romero-Contreras, Y.J., Maruri-López, I., Tromas, A., Schwan-Estrada, K.R.F., Serrano, M.. (2021). "Gadolinium Protects Arabidopsis thaliana against Botrytis cinerea through the Activation of JA/ET-Induced Defense Responses.". INT J MOL SCI. 22(9):-. [doi:10.3390/ijms22094938]34066536
2021Norte, A.C., Boyer, P.H., Castillo-Ramirez, S., Chvostác, M., Brahami, M.O., Rollins, R.E., Woudenberg, T., Didyk, Y.M., Derdakova, M., Núncio, M.S., de Carvalho, I.L., Margos, G., Fingerle, V.. (2021). "The Population Structure of Borrelia lusitaniae Is Reflected by a Population Division of Its Ixodes Vector.". Microorganisms. 9(5):-. [doi:10.3390/microorganisms9050933]33925391
2021Reyes-cortes, J.L., Azaola-espinosa, A., Lozano-aguirre, L., Ponce-alquicira, E.. (2021). "Physiological and Genomic Analysis of Bacillus pumilus UAMX Isolated from the Gastrointestinal Tract of Overweight Individuals.". Microorganisms. 9(5):-. [doi:10.3390/microorganisms9051076]34067853
2021García-Hernández, M.E., Trujillo-Ortega, M.E., Alcaraz-Estrada, S.L., Lozano-Aguirre-beltrán, L., Sandoval-Jaime, C., Taboada-Ramírez, B.I., Sarmiento-Silva, R.E.. (2021). "Molecular Detection and Characterization of Porcine Epidemic Diarrhea Virus and Porcine Aichivirus C Coinfection in México.". Viruses-Basel. 13(5):-. [doi:10.3390/v13050738]33922604
2021Garibay-Cerdenares, O.L., Sánchez-Meza, L.V., Encarnación-Guevara, S., Hernández-Ortíz, M., Martínez-Batallar, G., Torres-Rojas, F.I., Mendoza-Catalán, M.Á., Moral-Hernández, O.D., Leyva-Vázquez, M.A., Illades-Aguiar, B.. (2021). "Effect of HPV 16 E6 oncoprotein variants on the alterations of the proteome of C33A cells". CANCER GENOM PROTEOM. 18(3):273-283. [doi:10.21873/CGP.20258]33893080
2021Vences-Guzmán, M.Á., Peña-Miller, R., Hidalgo-Aguilar, N.A., Vences-Guzmán, M.L., Guan, Z., Sohlenkamp, C.. (2021). "Identification of the Flavobacterium johnsoniae cysteate-fatty acyl transferase required for capnine synthesis and for efficient gliding motility.". Environmental Microbiology. 23(5):2448-2460. [doi:10.1111/1462-2920.15445]33626217
2021Keseler, I.M., Gama-Castro, S., Mackie, A., Billington, R., Bonavides-Martínez, C., Caspi, R., Kothari, A., Krummenacker, M., Midford, P.E., Muñiz-Rascado, L., Ong, W.K., Paley, S., Santos-Zavaleta, A., Subhraveti, P., Tierrafría, V.H., Wolfe, A.J., Collado-Vides, J., Paulsen, I.T., Karp, P.D.. (2021). "The EcoCyc Database in 2021.". Frontiers in Microbiology. 12():-. [doi:10.3389/fmicb.2021.711077]34394059
2021Velázquez-Sánchez, C., Vences-Guzmán, M.Á., Moreno, S., Tinoco-Valencia, R., Espín, G., Guzmán, J., Sahonero-Canavesi, D.X., Sohlenkamp, C., Segura, D.. (2021). "PsrA positively regulates the unsaturated fatty acid synthesis operon fabAB in Azotobacter Vinelandii.". Microbiological Research. 249():-. [doi:10.1016/j.micres.2021.126775]33964629
2021Sánchez-González, G., Belak, Z.R., Lozano, L., Condé, R.. (2021). "Probability of consolidation constrains novel serotype emergence in dengue fever virus.". Plos One. 16(4):e0248765-. [doi:10.1371/journal.pone.0248765]33819302
2021Moya-Beltrán, A., Beard, S., Rojas-Villalobos, C., Issotta, F., Gallardo, Y., Ulloa, R., Giaveno, A., Degli Esposti, M., Johnson, D.B., Quatrini, R.. (2021). "Genomic evolution of the class Acidithiobacillia: deep-branching Proteobacteria living in extreme acidic conditions.". ISME JOURNAL. 15(11):3221-3238. [doi:10.1038/s41396-021-00995-x]34007059
2021Leifer, I., Sánchez-Pérez, M., Ishida, C., Makse, H.A.. (2021). "Predicting synchronized gene coexpression patterns from fibration symmetries in gene regulatory networks in bacteria.". Bmc Bioinformatics. 22(1):-. [doi:10.1186/s12859-021-04213-5]34238210
2021Alonso-del Valle, A., León-Sampedro, R., Rodríguez-Beltrán, J., DelaFuente, J., Hernández-García, M., Ruiz-Garbajosa, P., Cantón, R., Peña-Miller, R., San Millán, A.. (2021). "Variability of plasmid fitness effects contributes to plasmid persistence in bacterial communities.". Nature Communications. 12(1):-. [doi:10.1038/s41467-021-22849-y]33976161
2021Vera-Ponce León, A., Dominguez-Mirazo, M., Bustamante-Brito, R., Higareda-Alvear, V., Rosenblueth, M., Martínez-Romero, E.. (2021). "Functional genomics of a spiroplasma associated with the carmine cochineals Dactylopius coccus and Dactylopius opuntiae.". Bmc Genomics. 22(1):-. [doi:10.1186/s12864-021-07540-2]33823812
2021Andrade-Domínguez, A., Trejo-Hernández, A., Vargas-Lagunas, C., Encarnación-Guevara, S.. (2021). "Phenotypic plasticity and a new small molecule are involved in a fungal-bacterial interaction.". SCIENTIFIC REPORTS. 11(1):-. [doi:10.1038/s41598-021-98474-y]34584120
2021Aragón, W., Formey, D., Aviles-Baltazar, N.Y., Torres, M., Serrano, M.. (2021). "Arabidopsis thaliana Cuticle Composition Contributes to Differential Defense Response to Botrytis cinerea". Frontiers In Plant Science. 12():-. [doi:10.3389/fpls.2021.738949]34804086
2021Herrera-González, J.A., Bautista-Baños, S., Serrano, M., Romanazzi, G., Gutiérrez-Martínez, P.. (2021). "Non-Chemical Treatments for the Pre- and Post-Harvest Elicitation of Defense Mechanisms in the Fungi-Avocado Pathosystem". Molecules. 26(22):-. [doi:10.3390/molecules26226819]34833910
2021Soledad, B.R.M., Oscar, T.M., Sergio, G.I., Alicia, S.V., José Luis, A.N., Adrián, S.S.S., Catalina, G.E., Víctor, R.G.. (2021). "Source of detritus and toxic elements of seabed sediments from Acapulco Bay (southern Mexico) and their ecological risk.". MAR POLLUT BULL. 172():-. [doi:10.1016/j.marpolbul.2021.112797]34391010
2021Basanta, M.D., Rebollar, E.A., García-Castillo, M.G., Parra Olea, G.. (2021). "Comparative Analysis of Skin Bacterial Diversity and Its Potential Antifungal Function Between Desert and Pine Forest Populations of Boreal Toads Anaxyrus boreas.". Microbial Ecology. ():-. [doi:10.1007/s00248-021-01845-1]34427721
2021Aragón-Aranda, B., Palacios-Chaves, L., Salvador-Bescós, M., de Miguel, M.J., Muñoz, P.M., Vences-Guzmán, M.Á., Zúñiga-Ripa, A., Lázaro-Antón, L., Sohlenkamp, C., Moriyón, I., Iriarte, M., Conde-Álvarez, R.. (2021). "The Phospholipid N -Methyltransferase and Phosphatidylcholine Synthase Pathways and the ChoXWV Choline Uptake System Involved in Phosphatidylcholine Synthesis Are Widely Conserved in Most, but Not All Brucella Species.". Frontiers in Microbiology. 12():-. [doi:10.3389/fmicb.2021.614243]34421831
2021Maza-Lopez, Jocelyn, Contreras-Ochoa, Carla O., Reyes-Guerrero, David E., Encarnacion-Guevara, Sergio, Hernandez-Ortiz, Magdalena, Olmedo-Juarez, Agustin, Lopez-Arellano, Ma Eugenia. (2021). "Analysis of the immunomodulatory activity of excreted and secreted products from Haemonchus placei transition infective larvae (xL3)". VET PARASITOL. 298():109512-. [doi:10.1016/j.vetpar.2021.109512]34271321
2021Díaz-Rodríguez, M., Lithgow-Serrano, O., Guadarrama-García, F., Tierrafría, V.H., Gama-Castro, S., Solano-Lira, H., Salgado, H., Rinaldi, F., Méndez-Cruz, C.F., Collado-Vides, J.. (2021). "Lisen&Curate: A platform to facilitate gathering textual evidence for curation of regulation of transcription initiation in bacteria.". BBA-GENE REGUL MECH. 1864(11-12):-. [doi:10.1016/j.bbagrm.2021.194753]34461312
2021Ziazia P, Poulaki E, Gkizi D, Lozano L, Serrano M, Tjamos S. (2021). "Feeding the Microbes: A Strategy to Control Verticillium Wilt". Agronomy. 11(10):1946-. [doi:https://doi.org/10.3390/agronomy11101946]
2021Merchant-Larios, H., Diáz-Hernández, V., Cortez, D.. (2021). "Molecular and Cellular Mechanisms Underlying Temperature-Dependent Sex Determination in Turtles.". SEX DEV. 15(1-3):38-46. [doi:10.1159/000515296]34167126
2021Rizo, J., Guillén, D., Díaz-Ruiz, G., Wacher, C., Encarnación, S., Sánchez, S., Rodríguez-Sanoja, R.. (2021). "Metaproteomic Insights Into the Microbial Community in Pozol.". Frontiers in Nutrition. 8():-. [doi:10.3389/fnut.2021.714814]34490328
2021Montes-Carreto, L.M., Aguirre-Noyola, J.L., Solís-García, I.A., Ortega, J., Martinez-Romero, E., Guerrero, J.A.. (2021). "Diverse methanogens, bacteria and tannase genes in the feces of the endangered volcano rabbit ( Romerolagus diazi) .". Peerj. 9():e11942-. [doi:10.7717/peerj.11942]34458021
2021López-Chávez, M.Y., Alvarez-Legorreta, T., Infante-Mata, D., Dunn, M.F., Guillén-Navarro, K.. (2021). "Glyphosate-remediation potential of selected plant species in artificial wetlands". SCIENCE OF THE TOTAL ENVIRONMENT. 781():146812-. [doi:10.1016/j.scitotenv.2021.146812]
2021López-Leal, G., Reyes-Muñoz, A., Santamaria, R.I., Cevallos, M.A., Pérez-Monter, C., Castillo-Ramírez, S.. (2021). "A novel vieuvirus from multidrug-resistant Acinetobacter baumannii.". ARCH VIROL. 166(5):1401-1408. [doi:10.1007/s00705-021-05010-4]33635432
2021Camacho-Hernández, D.A., Nieto-Caballero, V.E., León-Burguete, J.E., Freyre-González, J.A.. (2021). "Partition Quantitative Assessment (PQA): A Quantitative Methodology to Assess the Embedded Noise in Clustered Omics and Systems Biology Data". Applied Sciences. 11(13):5999-. [doi:10.3390/app11135999]
2021Evans, B.A., Kumar, A., Castillo-Ramírez, S.. (2021). "Editorial: Genomic Basis of Antibiotic Resistance and Virulence in Acinetobacter .". Frontiers in Microbiology. 12():-. [doi:10.3389/fmicb.2021.670975]33859632
2021Coronado-Partida, L.D., Serrano, M., González-Estrada, R.R., Gutiérrez-Martínez, P.. (2021). "Application of GRAS compounds to control soft rot in jackfruit (Artocarpus heterophyllus L.) caused by Rhizopus stolonifer". TIP Revista Especializada en Ciencias Químico-Biológicas. 24():1-7. [doi:10.22201/fesz.23958723e.2021.327]
2021García-Soto I, Boussageon R, Cruz-Farfán YM, Castro-Chilpa JD, Hernández-Cerezo LX, Bustos-Zagal V, Leija-Salas A, Hernández G, Torres M, Formey D, Courty PE, Wipf D, Serrano M, Tromas A. (2021). "The Lotus japonicus ROP3 Is Involved in the Establishment of the Nitrogen-Fixing Symbiosis but Not of the Arbuscular Mycorrhizal Symbiosis.". Frontiers In Plant Science. 12():696450-696450. [doi:10.3389/fpls.2021.696450]34868100
2021Medina-Aparicio, L., Rodriguez-Gutierrez, S., Rebollar-Flores, J.E., Martínez-Batallar, Á.G., Mendoza-Mejía, B.D., Aguirre-Partida, E.D., Vázquez, A., Encarnación, S., Calva, E., Hernández-Lucas, I.. (2021). "The CRISPR-Cas System Is Involved in OmpR Genetic Regulation for Outer Membrane Protein Synthesis in Salmonella Typhi.". Frontiers in Microbiology. 12():-. [doi:10.3389/fmicb.2021.657404]33854491
2021Miranda-Rios, J. A., Ramirez-Trujillo, J. A., Jaime-Gallardo, D. J., Hernandez-Bueno, N. S., Ramirez-Yanez, M., Iturriaga, G., Suarez-Rodriguez, R.. (2021). "Arabidopsis thaliana AtTFIIB1 gene displays alternative splicing under different abiotic stresses". BIOL PLANTARUM. 65():255-264. [doi:10.32615/bp.2021.022]
2021Perez-Perez, L.M., Huerta-Ocampo, J.Á., Ramos-Enríquez, J.R., Ruiz-Cruz, S., Wong-Corral, F.J., Rosas-Burgos, E.C., Hernández-Ortíz, M., Encarnación-Guevara, S., Robles-García, M.A., Iturralde-García, R.D., Borboa-Flores, J., Del-Toro-Sánchez, C.L.. (2021). "Interaction of the human intestinal microbiota with the release of bound phenolic compounds in chickpea (Cicer arietinum L.)". INT J FOOD SCI TECH. ():-. [doi:10.1111/ijfs.15351]
2021Mendoza-Ramos, J.E., Talavera-Mendoza, O., Lopezaraiza-Mikel, M.E., Salgado-Souto, S.A., Sayago-Lorenzana, R.C., Ruiz, J., Sampedro-Rosas, L., Rosas-Acevedo, J.L., Aguirre-Noyola, J.L.. (2021). "Biomonitoring and Sourcing Toxic Elements Using Vascular Epiphytes of the Tillandsia Genus in the Mining Region of Taxco de Alarcon, Guerrero, Southern Mexico". WATER AIR AND SOIL POLLUTION. 232(1):9-. [doi:10.1007/s11270-020-04961-9]
2021Youseif, S.H., Abd El-Megeed, F.H., Mohamed, A.H., Ageez, A., Veliz, E., Martínez-Romero, E.. (2021). "Diverse Rhizobium strains isolated from root nodules of Trifolium alexandrinum in Egypt and symbiovars.". Systematic And Applied Microbiology. 44(1):-. [doi:10.1016/j.syapm.2020.126156]33232849
2021Hernandez-Beltran, J.C.R., Rodríguez-Beltrán, J., Millán, A.S., Peña-Miller, R., Fuentes-Hernández, A.. (2021). "Quantifying plasmid dynamics using single-cell microfluidics and image bioinformatics.". Plasmid. 113():-. [doi:10.1016/j.plasmid.2020.102517]32535165
2021Brom, Susana, Grohman, Elisabeth, Llosa, Matxalen. (2021). "Early Career Researcher (ECR)". Plasmid. 113():102526-. [doi:10.1016/j.plasmid.2020.102526]32750387
2021Álvarez-Gómez, T.B., Ramírez-Trujillo, J.A., Ramírez-Yáñez, M., Suárez-Rodríguez, R.. (2021). "Overexpression of SlERF3b and SlERF5 in transgenic tomato alters fruit size, number of seeds and promotes early flowering, tolerance to abiotic stress and resistance to Botrytis cinerea infection". ANN APPL BIOL. ():-. [doi:10.1111/aab.12712]
2021Arroyo-Fernández, Ignacio, Carrasco-Ruiz, Mauricio, Méndez, C.. (2021). "Procesamiento de lenguaje natural en la conservación de la herencia cultural: una red semántica del Popol Vuh". Patrimonio digital. Métodos computacionales y medios interactivos para
estudiar y divulgar el patrimonio cultural. ():25-34.
2021Córdoba-Castro, L.A., Salgado-Morales, R., Torres, M., Martínez-Aguilar, L., Lozano, L., Vences-Guzmán, M.Á., Guan, Z., Dantán-González, E., Serrano, M., Sohlenkamp, C.. (2021). "Ornithine Lipids in Burkholderia spp. Pathogenicity.". Frontiers in molecular biosciences. 7():-. [doi:10.3389/fmolb.2020.610932]33469548
2021Vichi, J., Salazar, E., Jacinto, V.J., Rodriguez, L.O., Grande, R., Dantán-González, E., Morett, E., Hernández-Mendoza, A.. (2021). "High-throughput transcriptome sequencing and comparative analysis of Escherichia coli and Schizosaccharomyces pombe in respiratory and fermentative growth.". Plos One. 16(3):e0248513-. [doi:10.1371/journal.pone.0248513]33730068
2021Alvear, V.M.H., Mateos, M., Cortez, D., Tamborindeguy, C., Martinez-Romero, E.. (2021). "Differential gene expression in a tripartite interaction: Drosophila , spiroplasma and parasitic wasps.". Peerj. 9():e11020-. [doi:10.7717/peerj.11020]33717711
2021Hernández-Oaxaca, D., López-Sánchez, R., Lozano, L., Wacher-Rodarte, C., Segovia, L., López Munguía, A.. (2021). "Diversity of Weissella confusa in Pozol and Its Carbohydrate Metabolism.". Frontiers in Microbiology. 12():-. [doi:10.3389/fmicb.2021.629449]33815312
2021Martínez-García, S., Peralta, H., Betanzos-Cabrera, G., Chavez-Galan, L., Rodríguez-Martínez, S., Cancino-Diaz, M.E., Cancino-Diaz, J.C.. (2021). "Proteomic comparison of biofilm vs. planktonic Staphylococcus epidermidis cells suggests key metabolic differences between these conditions.". Research In Microbiology. 172(2):-. [doi:10.1016/j.resmic.2020.103796]33412274
2021Cazares D, Cazares A, Figueroa W, Guarneros G, Edwards RA, Vinuesa P. (2021). "A Novel Group of Promiscuous Podophages Infecting Diverse Gammaproteobacteria from River Communities Exhibits Dynamic Intergenus Host Adaptation.". mSystems. 6(1):-. [doi:10.1128/mSystems.00773-20]33531404
2021Sachman-Ruiz, B., Lozano, L., Lira, J.J., Martínez, G., Rojas, C., Antonio Álvarez, J., Figueroa, J.V.. (2021). "A Comparative Genomic Study of Attenuated and Virulent Strains of Babesia bigemina .". Pathogens (Basel, Switzerland). 10(3):-. [doi:10.3390/pathogens10030318]33800466
2021Ángel Martín-Rodríguez, J., Ariani, A., Leija, A., Elizondo, A., Fuentes, S.I., Ramirez, M., Gepts, P., Hernández, G., Formey, D.. (2021). "Phaseolus vulgaris MIR1511 genotypic variations differentially regulate plant tolerance to aluminum toxicity.". PLANT JOURNAL. 105(6):1521-1533. [doi:10.1111/tpj.15129]33300202
2021León-Buitimea, A., Morones-Ramírez, J.R., Yang, J.H., Peña-Miller, R.. (2021). "Editorial: Facing the Upcoming of Multidrug-Resistant and Extensively Drug-Resistant Bacteria: Novel Antimicrobial Therapies (NATs).". Frontiers in bioengineering and biotechnology. 9():-. [doi:10.3389/fbioe.2021.636278]33732690
2021Castellani, L.G., Luchetti, A., Nilsson, J.F., Pérez-Giménez, J., Wegener, C., Schlüter, A., Pühler, A., Lagares, A., Brom, S., Pistorio, M., Niehaus, K., Torres Tejerizo, G.A.. (2021). "Exopolysaccharide Characterization of Rhizobium Favelukesii LPU83 and Its Role in the Symbiosis With Alfalfa.". Frontiers In Plant Science. 12():-. [doi:10.3389/fpls.2021.642576]33643369
2020Pineda-Mora, D., Juárez-López, A.L., Toribio-Jiménez, J., Leal-Ascencio, M.T., Ruvalcaba-Ledezma, J.C., Castelán-Sánchez, H.G., Aguirre-Noyola, J.L., Arp, P.A.. (2020). "Diversity and Functions of Epilithic Riverine Biofilms". WATER AIR AND SOIL POLLUTION. 231(8):391-. [doi:10.1007/s11270-020-04692-x]
2020Carballo-Ontiveros, M.A., Cazares, A., Vinuesa, P., Kameyama, L., Guarneros, G.. (2020). "The Concerted Action of Two B3-Like Prophage Genes Excludes Superinfecting Bacteriophages by Blocking DNA Entry into pseudomonas Aeruginosa". JOURNAL OF VIROLOGY. 94(15):e00953-20-. [doi:10.1128/JVI.00953-20]32461312
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2005Medrano-Soto, A, Christen, JA, Collado-Vides, J. (2005). "BClass: A Bayesian approach based on mixture models for clustering and classification of heterogeneous biological data". JOURNAL OF STATISTICAL SOFTWARE. 13(2):1-18. [doi:10.18637/jss.v013.i02]
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2004Venkova-Canova, T, Soberon, NE, Ramirez-Romero, MA, Cevallos, MA. (2004). "Two discrete elements are required for the replication of a repABC plasmid: an antisense RNA and a stem-loop structure". Molecular Microbiology. 54(5):1431-1444. [doi:10.1111/j.1365-2958.2004.04366.x]15554980
2004Zuniga-Castillo, J, Romero, D, Martinez-Salazar, JM. (2004). "The recombination genes addAB are not restricted to gram-positive bacteria: Genetic analysis of the recombination initiation enzymes recF and addAB in Rhizobium etli". Journal Of Bacteriology. 186(23):7905-7913. [doi:10.1128/JB.186.23.7905-7913.2004]15547262
2004Medrano Soto, Luis Arturo, Moreno Hagelsieb, Gabriel, Vinuesa Fleischmann, Pablo, Christen, J.A., Collado Vides, Pedro Julio. (2004). "Successful lateral transfer requires codon usage compatibility between foreign genes and recipient genomes". MOLECULAR BIOLOGY AND EVOLUTION. 21(10):1884-1894. [doi:10.1093/molbev/msh202]15240837
2004Brom Klanner, Susana, Girard Cuesy, María de Lourdes, Tun Garrido, Cristina Soleda, García de los Santos, Alejandro, Bustos Arcos, Virginia Patricia, González Zúñiga, Víctor Manuel, Romero Camarena, David René. (2004). "Transfer of the symbiotic plasmid of Rhizobium etli CFN42 requires cointegration with p42a, which may be mediated by site-specific recombination". Journal Of Bacteriology. 186(22):7538-7548. [doi:10.1128/JB.186.22.7538-7548.2004]15516565
2004Hernández Lucas, Ismael, Rogel Hernández, Marco Antonio, Segovia, L., Rojas-Jimenez, K., Martínez Romero, María Esperanza. (2004). "Phylogenetic relationships of Rhizobia based on citrate synthase gene sequences". Systematic And Applied Microbiology. 27(6):703-706. [doi:10.1078/0723202042369893]15612628
2004Goris, J, De Vos, P, Caballero-Mellado, J, Park, J, Falsen, E, Quensen, JF, Tiedje, JM, Vandamme, P. (2004). "Classification of the biphenyl- and polychlorinated biphenyl-degrading strain LB400(T) and relatives as Burkholderia xenovorans sp nov.". International Journal Of Systematic And Evolutionary Microbiology. 54(5):1677-1681. [doi:10.1099/ijs.0.63101-0]15388727
2004Encarnacion, Sergio, Garcia, Juan, Hernandez, Magdalena, Vargas, Maria del Carmen, Contreras, Sandra, Mora, Jaime. (2004). "Protein expression during biofilm formation in Rhizobium etli and Sinorhizobium meliloti". MOLECULAR & CELLULAR PROTEOMICS. 3(10, S):150-150.
2004Sohlenkamp, C, de Rudder, KEE, Geiger, O. (2004). "Phosphatidylethanolamine Is Not Essential for Growth of Sinorhizobium meliloti on Complex Culture Media". Journal Of Bacteriology. 186(6):1667-1677. [doi:10.1128/JB.186.6.1667-1677.2004]14996797
2004Gao, JL, Weissenmayer, B, Taylor, AM, Thomas-Oates, J, Lopez-Lara, IM, Geiger, O. (2004). "Identification of a gene required for the formation of lyso-ornithine lipid, an intermediate in the biosynthesis of ornithine-containing lipids". Molecular Microbiology. 53(6):1757-1770. [doi:10.1111/j.1365-2958.2004.04240.x]15341653
2004Caballero-Mellado, J, Martinez-Aguilar, L, Paredes-Valdez, G, Estrada-de los Santos, P. (2004). "Burkholderia unamae sp nov., an N-2-fixing rhizospheric and endophytic species". International Journal Of Systematic And Evolutionary Microbiology. 54(4):1165-1172. [doi:10.1099/ijs.0.02951-0]15280286
2004Peralta, H, Mora, Y, Salazar, E, Encarnacion, S, Palacios, R, Mora, J. (2004). "Engineering the nifH promoter region and abolishing poly-ß -hydroxybutyrate accumulation in Rhizobium etli enhance nitrogen fixation in symbiosis with Phaseolus vulgaris". Applied And Environmental Microbiology. 70(6):3272-3281. [doi:10.1128/AEM.70.6.3272-3281.2004]15184121
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2004Soberon, N, Venkova-Canova, T, Ramirez-Romero, MA, Tellez-Sosa, J, Cevallos, MA. (2004). "Incompatibility and the partitioning site of the repABC basic replicon of the symbiotic plasmid from Rhizobium etli". Plasmid. 51(3):203-216. [doi:10.1016/j.plasmid.2004.01.005]15109827
2004Lamboy, WF, Moreno-Hagelsieb, G. (2004). "A new method of solution for the occupancy problem and its application to operon size prediction". JOURNAL OF THEORETICAL BIOLOGY. 227(3):315-322. [doi:10.1016/j.jtbi.2003.11.009]15019498
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2004Perez-Rueda, E., Collado Vides, Pedro Julio, Segovia, L.. (2004). "Phylogenetic distribution of DNA-binding transcription factors in bacteria and archaea". COMPUTATIONAL BIOLOGY AND CHEMISTRY. 28(5-6):341-350. [doi:10.1016/j.compbiolchem.2004.09.004]15556475
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2004Pérez, J., Pazos, R.A., Frausto, J., Rodríguez, G., Romero, D., Cruz, L.. (2004). "A statistical approach for algorithm selection". LECT NOTES COMPUT SC. 3059():417-431. [doi:10.1007/978-3-540-24838-5_31]
2004Geiger, Otto, Martínez Morales, Fernando, Sohlenkamp, Christian, López Lara, Isabel María. (2004). "ROLE OF BACTERIAL PHOSPHATIDYLCHOLINE IN SYMBIOTIC AND PATHOGENIC INTERACTIONS". Biology of Molecular Plant-Microbe Interactions. ():423-426.
2004. (2004). "CLI: An Open Linguistic Corpus for Engineering". Proceedings of IX Ibero-American Workshop on Artificial Intelligence. ():203-208.
2004Costa, J.L., Martínez Romero, María Esperanza, Lindblad, P.. (2004). "Sequence based data supports a single Nostoc strain in individual coralloid roots of cycads". Fems Microbiology Ecology. 49(3):481-487. [doi:10.1016/j.femsec.2004.05.001]19712296
2004Rosenblueth Laguette, Mónica Teresa, Martínez Romero, María Esperanza. (2004). "Rhizobium etli maize populations and their competitivenes for roof colonization". Archives Of Microbiology. 181(5):337-344. [doi:10.1007/s00203-004-0661-9]15024554
2004Batista, C.V.F., Del Pozo, L., Zamudio, F.Z., Contreras Martínez, Sandra, Becerril, B., Wanke, E., Possani, L.D.. (2004). "Proteomics of the venom from the Amazonian scorpion Tityus Cambridgei and the role of prolines on mass spectrometry analysis of toxins". JOURNAL OF CHROMATOGRAPHY B-ANALYTICAL TECHNOLOGIES IN THE BIOMEDICAL AND LIFE SCIENCES. 803(1):55-66. [doi:10.1016/j.jchromb.2003.09.002]15025998
2004Karp, PD, Arnaud, M, Collado-Vides, J, Ingraham, J, Paulsen, IT, Saier, MH. (2004). "The E. coli EcoCyc database: No longer just a metabolic pathway database". Asm News. 70(1):25-30.
2004Oviedo, N.A., Salgado Osorio, Heladia, Collado Vides, Pedro Julio, Guarneros, G.. (2004). "Distribution of minigenes in the bacteriophage lambda chromosome". Gene. 329(1-2):115-124. [doi:10.1016/j.gene.2003.12.031]15033534
2004Resendis-Antonio, O, Collado-Vides, J. (2004). "The growth of random networks as a diffusion process". PHYSICA A-STATISTICAL MECHANICS AND ITS APPLICATIONS. 342(3-4):551-560. [doi:10.1016/j.physa.2004.05.037]
2004Sepulveda, Edgardo, Perez-Mendoza, Daniel, Munoz, Socorro, Ramirez-Romero, Miguel A., Soto, Maria Jose, Cervantes, Laura, Herrera-Cervera, Jose A., Lopez-Lara, Isabel Sabel, Geiger, Otto, Sanuan, Juan, Brom, Susana, Romero, David. (2004). "Identification of functional mob regions in Rhizobium etli: Evidence for self-transmissibility of the symbiotic plasmid pRetCFN42d". Journal Of Bacteriology. 186(17):5753-5761. [doi:10.1128/JB.186.17.5753-5761.2004]15317780
2004Vargas, M. del C., Encarnacin, S., Girard, M. de L., Reyes, A., Mora, Y., Mora, J.. (2004). "Physiological and proteome characterizations of oxidative-stress response in Rhizobium etli during free life and symbiosis with Phaseolus vulgaris.". MOLECULAR & CELLULAR PROTEOMICS. 3(10, S):160-160.
2004Vinuesa, P, Silva, C. (2004). "Species delineation and biogeography of symbiotic bacteria associated with cultivated and wild legumes". Biological Resources And Migration. ():143-155.
2004Rosenblueth Laguette, Mónica Teresa, Martínez Martínez, Lucía Lourdes, Silva, J., Martínez Romero, María Esperanza. (2004). "Klebsiella variicola, A Novel Species with Clinical and Plant-Associated Isolates". Systematic And Applied Microbiology. 27(1):27-35. [doi:10.1078/0723-2020-00261]15053318
2004Salgado Osorio, Heladia, Gama Castro, Ma. del Socorro, Martínez Antonio, Agustino, Díaz Peredo, Edgar Ulises, Sánchez Solano, Erika Fabiola, Peralta Gil, Martín, García Alonso, Delfino, Jiménez Jacinto, Verónica, Santos Zavaleta, Alberto, Bonavides Martínez, César Augusto, Collado Vides, Pedro Julio. (2004). "RegulonDB (version 4.0): Transcriptional regulation, operon organization and growth conditions in Escherichia coli K-12". Nucleic Acids Research. 32(DATABASE ISS.):303-306. [doi:10.1093/nar/gkh140]14681419
2003Wang, E.T., Kan, F.L., Tan, Z.Y., Toledo García, Icela Ivonne, Chen, W.X., Martínez Romero, María Esperanza. (2003). "Diverse Mesorhizobium plurifarium populations native to Mexican soils". Archives Of Microbiology. 180(6):444-454. [doi:10.1007/s00203-003-0610-z]14576977
2003Broughton, WJ, Hernandez, G, Blair, M, Beebe, S, Gepts, P, Vanderleyden, J. (2003). "Beans (Phaseolus spp.) - model food legumes". PLANT AND SOIL. 252(1):55-128. [doi:10.1023/A:1024146710611]
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2003Suarez, R, Marquez, J, Shishkova, S, Hernandez, G. (2003). "Overexpression of alfalfa cytosolic glutamine synthetase in nodules and flowers of transgenic Lotus japonicus plants". Physiologia Plantarum. 117(3):326-336. [doi:10.1034/j.1399-3054.2003.00053.x]12654032
2003Cordoba, E, Shishkova, S, Vance, CP, Hernandez, G. (2003). "Antisense inhibition of NADH glutamate synthase impairs carbon/nitrogen assimilation in nodules of alfalfa (Medicago sativa L.)". PLANT JOURNAL. 33(6):1037-1049. [doi:10.1046/j.1365-313X.2003.01686.x]12631328
2003Silva, C, Vinuesa, P, Eguiarte, LE, Martinez-Romero, E, Souza, V. (2003). "Rhizobium etli and Rhizobium gallicum nodulate common bean (Phaseolus vulgaris) in a traditionally managed milpa plot in Mexico: Population genetics and biogeographic implications". Applied And Environmental Microbiology. 69(2):884-893. [doi:10.1128/AEM.69.2.884-893.2003]12571008
2003Silvente, S, Camas, A, Lara Flores, Miguel. (2003). "Heterogeneity of sucrose synthase genes in bean (Phaseolus vulgaris L.): evidence for a nodule-enhanced sucrose synthase gene". Journal Of Experimental Botany. 54(383):749-755. [doi:10.1097/jxb/erg086]12554718
2003Vargas, MD, Encarnacion, S, Davalos, A, Reyes-Perez, A, Mora, Y, Garcia-de los Santos, A, Brom, S, Moral, J. (2003). "Only one catalase, katG, is detectable in Rhizobium etli, and is encoded along with the regulator OxyR on a plasmid replicon". MICROBIOLOGY-SGM. 149(5):1165-1176. [doi:10.1099/mic.0.25909-0]12724378
2003Jahn, OJ, Davila, G, Romero, D, Noel, KD. (2003). "BacS: An abundant bacteroid protein in Rhizobium etli whose expression ex planta requires nifA". Molecular Plant-Microbe Interactions. 16(1):65-73. [doi:10.1094/MPMI.2003.16.1.65]12580283
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2003Snoeck, C., Verreth, C., Hernández Lucas, Ismael, Martínez Romero, María Esperanza, Vanderleyden, J.. (2003). "Identification of a third sulfate activation system in Sinorhizobium sp. strain BR816: The CysDN sulfate activation complex". Applied And Environmental Microbiology. 69(4):2006-2014. [doi:10.1128/AEM.69.4.2006-2014.2003]12676676
2003Pérez O., J., Pazos R., R.A., Romero, D., Santaolaya S., R., Rodriguez O., G., Sosa S., V.. (2003). "Adaptive and scalable allocation of data-objects in the web". LECT NOTES COMPUT SC. 2667():134-143. [doi:10.1007/3-540-44839-x_15]
2003Toledo García, Icela Ivonne, Lloret y Sánchez, Lourdes Teresa, Martínez Romero, María Esperanza. (2003). "Sinorhizobium americanus sp. nov., a New Sinorhizobium species nodulating native Acacia spp. in Mexico". Systematic And Applied Microbiology. 26(1):54-64. [doi:10.1078/072320203322337317]12747410
2003Uhde-Stone, C., Zinn, K.E., Ramirez-Yanez, M, Li, A.G., Vance, C.P., Allan, D.L.. (2003). "Nylon filter arrays reveal differential gene expression in proteoid roots of white lupin in response to phosphorus deficiency". Plant Physiology. 131(3):1064-1079. [doi:10.1104/pp.102.016881]12644659
2003Vinuesa Fleischmann, Pablo, Neumann-Silkow, F., Pacios-Bras, C., Spaink, H.P., Martínez Romero, María Esperanza, Werner, D.. (2003). "Genetic analysis of a pH-regulated operon from Rhizobium tropici CIAT899 involved in acid tolerance and nodulation competitiveness". Molecular Plant-Microbe Interactions. 16(2):159-168. [doi:10.1094/MPMI.2003.16.2.159]12575750
2003Martinez-Romero, E. (2003). "Diversity of Rhizobium-Phaseolus vulgaris symbiosis: Overview and perspectives". PLANT AND SOIL. 252(1):11-23. [doi:10.1023/A:1024199013926]
2003Silvente, S, Camas, A, Lara Flores, Miguel. (2003). "Molecular cloning of the cDNA encoding aspartate aminotransferase from bean root nodules and determination of its role in nodule nitrogen metabolism". Journal Of Experimental Botany. 54(387):1545-1551. [doi:10.1093/jxb/erg161]12730270
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2003Young, J.M., Kuykendall, L.D., Martínez Romero, María Esperanza, Kerr, A., Sawada, H.. (2003). "Classification and nomenclature of Agrobacterium and Rhizobium - A reply to Farrand et al. (2003)". International Journal Of Systematic And Evolutionary Microbiology. 53(5):1689-1695. [doi:10.1099/ijs.0.02762-0]13130069
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2003Desnoues, N., Lin, M., Guo, XW, Ma, L.Y., Carreno-Lopez, R., Elmerich, C.. (2003). "Nitrogen fixation genetics and regulation in a pseudomonas Stutzeri strain associated with rice". MICROBIOLOGY-SGM. 149(8):2251-2262. [doi:10.1099/mic.0.26270-0]12904565
2003Valencia-Cantero, E, Pena-Cabriales, JJ, Martinez-Romero, E. (2003). "The corrosion effects of sulfate- and ferric-reducing bacterial consortia on steel". GEOMICROBIOLOGY JOURNAL. 20(2):157-169. [doi:10.1080/01490450390193264]
2003Jauregui, R, Abreu-Goodger, C, Moreno-Hagelsieb, G, Collado-Vides, J, Merino, E. (2003). "Conservation of DNA curvature signals in regulatory regions of prokaryotic genes". Nucleic Acids Research. 31(23):6770-6777. [doi:10.1093/nar/gkg882]14627810
2003Gutiérrez Ríos, Rosa María, Rosenblueth, D.A., Loza, José Antonio, Huerta Moreno, Araceli, Glasner, J.D., Blattner, F.R., Collado Vides, Pedro Julio. (2003). "Regulatory network of Escherichia coli: Consistency between literature knowledge and microarray profiles". GENOME RESEARCH. 13(11):2435-2443. [doi:10.1101/gr.1387003]14597655
2003Martínez Antonio, Agustino, Salgado Osorio, Heladia, Gama Castro, Ma. del Socorro, Gutiérrez Ríos, Rosa María, Jiménez Jacinto, Verónica, Collado Vides, Pedro Julio. (2003). "Environmental Conditions and Transcriptional Regulation in Escherichia coli: A Physiological Integrative Approach". BIOTECHNOLOGY AND BIOENGINEERING. 84(7):743-749. [doi:10.1002/bit.10846]14708114
2003Romero, D., Zertuche, F.. (2003). "The asymptotic number of attractors in the random map model". JOURNAL OF PHYSICS A-MATHEMATICAL AND GENERAL. 36(13):3691-3700. [doi:10.1088/0305-4470/36/13/304]
2003González Zúñiga, Víctor Manuel, Bustos Arcos, Virginia Patricia, Ramírez Romero, Miguel Ángel, Medrano Soto, Luis Arturo, Salgado Osorio, Heladia, Hernández González, Ismael Luis, Hernández Celis, Juan Carlos, Quintero Hernández, Verónica, Moreno Hagelsieb, Gabriel, Girard Cuesy, María de Lourdes, Rodríguez Sánchez, Oscar, Flores López, Margarita, Cevallos Gaos, Miguel Ángel Carlos, Collado Vides, Pedro Julio, Romero Camarena, David René, Dávila Ramos, José Guillermo. (2003). "The mosaic structure of the symbiotic plasmid of Rhizobium etli CFN42 and its relation to other symbiotic genome compartments.". Genome Biology. 4(6):R36-. [doi:10.1186/gb-2003-4-6-r36]12801410
2003Willems, A., Fernandez-Lopez, M., Munoz-Adelantado, E., Goris, J., De Vos, P., Martínez Romero, María Esperanza, Toro, N., Gillis, M.. (2003). "Description of new Ensifer strains from nodules and proposal to transfer Ensifer adhaerens Casida 1982 to Sinorhizobium as Sinorhizobium adhaerens comb. nov. Request for an Opinion". International Journal Of Systematic And Evolutionary Microbiology. 53(4):1207-1217. [doi:10.1099/ijs.0.02264-0]12892151
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2003Lopez-Lara, IM, Sohlenkamp, C, Geiger, O. (2003). "Membrane lipids in plant-associated bacteria: Their biosyntheses and possible functions". Molecular Plant-Microbe Interactions. 16(7):567-579. [doi:10.1094/MPMI.2003.16.7.567]12848422
2003Martinez, L, Caballero-Mellaod, J, Orozco, J, Martinez-Romero, E. (2003). "Diazotrophic bacteria associated with banana (Musa spp.)". PLANT AND SOIL. 257(1):35-47. [doi:10.1023/A:1026283311770]
2003Munoz-Rojas, J, Caballero-Mellado, J. (2003). "Population dynamics of Gluconacetobacter diazotrophicus in sugarcane cultivars and its effect on plant growth". Microbial Ecology. 46(4):454-464. [doi:10.1007/s00248-003-0110-3]14722690
2003Martinez-Morales, F, Schobert, M, Lopez-Lara, IM, Geiger, O. (2003). "Pathways for phosphatidylcholine biosynthesis in bacteria". MICROBIOLOGY-SGM. 149(12):3461-3471. [doi:10.1099/mic.0.26522-0]14663079
2003Sohlenkamp, C, Lopez-Lara, IM, Geiger, O. (2003). "Biosynthesis of phosphatidylcholine in bacteria". Progress In Lipid Research. 42(2):115-162. [doi:10.1016/S0163-7827(02)00050-4]12547654
2003Valderrama, B, Oliver, P, Medrano-Soto, A, Vazquez-Duhalt, R. (2003). "Evolutionary and structural diversity of fungal laccases". Antonie Van Leeuwenhoek International Journal of General and Molecular; Microbiology. 84(4):289-299. [doi:10.1023/A:1026070122451]14574106
2002Acosta-Durán, C., Martínez Romero, María Esperanza. (2002). "Diversity of Rhizobia from nodules of the leguminous tree Gliricidia sepium, a natural host of Rhizobium tropici". Archives Of Microbiology. 178(2):161-164. [doi:10.1007/s00203-002-0433-3]12115061
2002del Río G., Santamaria Gutiérrez, Rosa Isela, Díaz M.L., Soberón Mainero, Xavier, López-Munguía, Agustín. (2002). "Novel and potential applications of alpha-amylases in the food industry". Engineering and Food for the 21st Century. ():913-925.
2002Weissenmayer, B, Gao, JL, Lopez-Lara, IM, Geiger, O. (2002). "Identification of a gene required for the biosynthesis of ornithine-derived lipids". Molecular Microbiology. 45(3):721-733. [doi:10.1046/j.1365-2958.2002.03043.x]12139618
2002Garcia-de los Santos, A, Morales, A, Baldoma, L, Clark, SRD, Brom, S, Yost, CK, Hernandez-Lucas, I, Aguilar, J, Hynes, MF. (2002). "The glcB locus of Rhizobium leguminosarum VF39 encodes an arabinose-inducible malate synthase". Canadian Journal Of Microbiology. 48(10):922-932. [doi:10.1139/w02-091]12489782
2002Hernandez-Lucas, I, Mavingui, P, Finan, T, Chain, P, Martinez-Romero, E. (2002). "in vivo cloning strategy for Rhizobium plasmids". Biotechniques. 33(4):782-788. [doi:10.2144/02334st01]12398186
2002Quintero, V, Cevallos, MA, Davila, G. (2002). "A site-specific recombinase (RinQ) is required to exert incompatibility towards the symbiotic plasmid of Rhizobium etli". Molecular Microbiology. 46(4):1023-1032. [doi:10.1046/j.1365-2958.2002.03205.x]12421308
2002Sohlenkamp, C, Wood, CC, Roeb, GW, Udvardi, MK. (2002). "Characterization of Arabidopsis AtAMT2, a high-affinity ammonium transporter of the plasma membrane". Plant Physiology. 130(4):1788-1796. [doi:10.1104/pp.008599]12481062
2002Karp, PD, Riley, M, Saier, M, Paulsen, IT, Collado-Vides, J, Paley, SM, Pellegrini-Toole, A, Bonavides, C, Gama-Castro, S. (2002). "The EcoCyc database". Nucleic Acids Research. 30(1):56-58. [doi:10.1093/nar/30.1.56]11752253
2002Huerta, AM, Glasner, JD, Gutierrez-Rios, RM, Blattner, FR, Collado-Vides, J. (2002). "GETools: gene expression tool for analysis of transcriptome experiments in E. coli". TRENDS IN GENETICS. 18(4):217-218. [doi:10.1016/S0168-9525(01)02620-8]
2002Collado-Vides, J, Moreno-Hagelsieb, G, Medrano-Soto, A. (2002). "Microbial computational genomics of gene regulation". PURE AND APPLIED CHEMISTRY. 74(6):899-905. [doi:10.1351/pac200274060899]
2002de Daruvar, A, Collado-Vides, J, Valencia, A. (2002). "Analysis of the cellular functions of Escherichia coli operons and their conservation in Bacillus Subtilis". Journal Of Molecular Evolution. 55(2):211-221. [doi:10.1007/s00239-002-2317-1]12107597
2002Dunn, MF, Araiza, G, Encarnacion, S, del Vargas, M, Mora, J. (2002). "Effect of aniA (carbon flux regulator) and phaC (poly-ß-hydroxybutyrate synthase) mutations on pyruvate metabolism in Rhizobium etli". Journal Of Bacteriology. 184(8):2296-2299. [doi:10.1128/JB.184.8.2296-2299.2002]11914362
2002Degrave, W.M., Vargas, R., Alvarez, F., Collado Vides, Pedro Julio, Nunez, L., Ramirez, J.L., Grau, O.. (2002). "Towards a bioinformatics network for Latin America and the Caribbean (LACBioNet).". Applied Bioinformatics. 1(1):53-56. 15130857
2002Brom Klanner, Susana, Girard Cuesy, María de Lourdes, García de los Santos, Alejandro, Sanjuan-Pinilla, J.M., Olivares, J., Sanjuan, J.. (2002). "Conservation of plasmid-encoded traits among bean-nodulating Rhizobium species". Applied And Environmental Microbiology. 68(5):2555-2561. [doi:10.1128/AEM.68.5.2555-2561.2002]11976134
2002Camas, A, Cardenas, L, Quinto, C, Lara Flores, Miguel. (2002). "Expression of different calmodulin genes in bean (Phaseolus vulgaris L.): Role of nod factor on calmodulin gene regulation". Molecular Plant-Microbe Interactions. 15(5):428-436. [doi:10.1094/MPMI.2002.15.5.428]12036273
2002Cevallos, MA, Porta, H, Izquierdo, J, Tun-Garrido, C, Garcia-de-los-Santos, A, Davila, G, Brom, S. (2002). "Rhizobium etli CFN42 contains at least three plasmids of the repABC family: A structural and evolutionary analysis". Plasmid. 48(2):104-116. [doi:10.1016/S0147-619X(02)00119-1]12383728
2002Lira-Ruan, V, Ross, EJH, Sarath, G, Klucas, RV, Arredondo-Peter, R. (2002). "Mapping and analysis of a hemoglobin gene family from Oryza sativa". PLANT PHYSIOLOGY AND BIOCHEMISTRY. 40(3):199-202. [doi:10.1016/S0981-9428(02)01365-7]
2002Moreno Hagelsieb, Gabriel, Collado Vides, Pedro Julio. (2002). "Operon conservation from the point of view of Escherichia coli, and inference of functional interdependence of gene products from genome context". In Silico Biology: Journal of Biological Systems Modeling and Multi-Scale Simulation. 2(2):87-95. 12066843
2002Geiger, Otto, López Lara, Isabel María. (2002). "Rhizobial acyl carrier proteins and their roles in the formation of bacterial cell-surface components that are required for the development of nitrogen-fixing root nodules on legume hosts". Fems Microbiology Letters. 208(2):153-162. [doi:10.1016/S0378-1097(02)00478-0]11959430
2002Silvente Keller, Sonia Teresa, Blanco López, María de Lourdes, Camas, Alberto, Ortega, José Luis, Ramírez Yáñez, Mario, Lara Flores, Miguel. (2002). "Rhizobium etli mutant modulates carbon and nitrogen metabolism in Phaseolus vulgaris nodules". Molecular Plant-Microbe Interactions. 15(7):728-733. [doi:10.1094/MPMI.2002.15.7.728]12118889
2002Wang, E.T., Tan, Z.Y., Willems, A., Fernandez-Lopez, M., Reinhold-Hurek, B., Martínez Romero, María Esperanza. (2002). "Sinorhizobium morelense sp. nov., a Leucaena leucocephala-associated bacterium that is highly resistant to multiple antibiotics". International Journal Of Systematic And Evolutionary Microbiology. 52(5):1687-1693. [doi:10.1099/ijs.0.01954-0]12361275
2002Wang, E.T., Rogel Hernández, Marco Antonio, Sui, X.H., Chen, W.X., Martínez Romero, María Esperanza, van Berkum, P.. (2002). "Mesorhizobium amorphae, a rhizobial species that nodulates Amorpha fruticosa, is native to American soils". Archives Of Microbiology. 178(4):301-305. [doi:10.1007/s00203-002-0448-9]12209264
2002Moreno Hagelsieb, Gabriel, Collado Vides, Pedro Julio. (2002). "A powerful non-homology method for the prediction of operons in prokaryotes.". Bioinformatics. 18 Suppl 1():329-336. [doi:10.1093/bioinformatics/18.suppl_1.s329]12169563
2002Benítez Bellón, Esperanza, Moreno Hagelsieb, Gabriel, Collado Vides, Pedro Julio. (2002). "Evaluation of thresholds for the detection of binding sites for regulatory proteins in Escherichia coli K12 DNA.". Genome Biology. 3(3):RESEARCH0013-. 11897025
2002Tellez-Sosa, J, Soberon, N, Vega-Segura, A, Torres-Marquez, ME, Cevallos, MA. (2002). "The Rhizobium etli cyaC product: Characterization of a novel adenylate cyclase class". Journal Of Bacteriology. 184(13):3560-3568. [doi:10.1128/JB.184.13.3560-3568.2002]12057950
2002Estrada, P, Mavingui, P, Cournoyer, B, Fontaine, F, Balandreau, J, Caballero-Mellado, J. (2002). "A N-2-fixing endophytic Burkholderia sp associated with maize plants cultivated in Mexico". Canadian Journal Of Microbiology. 48(4):285-294. [doi:10.1139/w02-023]12030700
2002Mavingui, P, Flores, M, Guo, XW, Davila, G, Perret, X, Broughton, WJ, Palacios, R. (2002). "Dynamics of genome architecture in Rhizobium sp strain NGR234". Journal Of Bacteriology. 184(1):171-176. [doi:10.1128/JB.184.1.171-176.2002]11741857
2002Collado-Vides, J., Moreno-Hagelsieb, G., Medrano-Soto, A.. (2002). "Microbial computational genomics of gene regulation". PURE AND APPLIED CHEMISTRY. 74(6):899-905. [doi:10.1351/pac200274060899]
2002Collado Vides, Pedro Julio, Moreno Hagelsieb, Gabriel, Pérez Rueda, Ernesto, Salgado Osorio, Heladia, Huerta Moreno, Araceli, Gutiérrez Ríos, Rosa María, Rosenblueth, David A., Christen, Andrés, Benítez Bellón, Esperanza, Medrano Soto, Luis Arturo, Gama Castro, Ma. del Socorro, Santos Zavaleta, Alberto, Bonavides Martínez, César Augusto, DíPeredo, Edgar, Sánchez Solano, Erika Fabiola, Millá, Dulce María. (2002). "Genomics of Gene Regulation: The view from Escherichia coli". Gene Regulation and Metabolism, Post-Genomic Computational Approaches. ():103-128.
2002Encarnacion, S, del Vargas, M, Dunn, MF, Davalos, A, Mendoza, G, Mora, Y, Mora, J. (2002). "aniA regulates reserve polymer accumulation and global protein expression in Rhizobium etli". Journal Of Bacteriology. 184(8):2287-2295. [doi:10.1128/JB.184.8.2287-2295.2002]11914361
2002Ramírez Alfonsín, J.L., Romero, D.. (2002). "Embeddability of the combinohedron". DISCRETE MATH. 254(1-3):473-483. [doi:10.1016/S0012-365X(01)00298-9]
2002Castillo, P, Zamilpa, A, Marquez, J, Hernandez, G, Lara Flores, Miguel, Alvarez, L. (2002). "Comparative study of differentiation levels and valepotriate content of in vitro cultures and regenerated and wild plants of Valeriana edulis ssp procera". JOURNAL OF NATURAL PRODUCTS. 65(4):573-575. [doi:10.1021/np0104267]11975504
2002Sessitsch, A, Howieson, JG, Perret, X, Antoun, H, Martinez-Romero, E. (2002). "Advances in Rhizobium research". CRITICAL REVIEWS IN PLANT SCIENCES. 21(4):323-378. [doi:10.1080/0735-260291044278]
2002Falcon, LI, Escobar-Briones, E, Romero, D. (2002). "Nitrogen fixation patterns displayed by cyanobacterial consortia in Alchichica crater-lake, Mexico". Hydrobiologia. 467(1-3):71-78. [doi:10.1023/A:1014984629985]
2001Ross, E.J.H., Shearman, L., Mathiesen, M., Zhou, Y.J., Arredondo-Peter, R, Sarath, G., Klucas, R.V.. (2001). "Nonsymbiotic hemoglobins in rice are synthesized during germination and in differentiating cell types". Protoplasma. 218(3-4):125-133. [doi:10.1007/BF01306602]11770429
2001López, O., Morera, C., Miranda-Ríos, J., Girard Cuesy, María de Lourdes, Romero Camarena, David René, Soberón Chávez, Mario. (2001). "Regulation of gene expression in response to oxygen in Rhizobium etli: Role of FnrN in fixNOQP expression and in symbiotic nitrogen fixation". Journal Of Bacteriology. 183(24):6999-7006. [doi:10.1128/JB.183.24.6999-7006.2001]11717256
2001Lira Ruan, Verónica, Sarath, G., Klucas, R.V., Arredondo Peter, José Raúl. (2001). "Synthesis of hemoglobins in rice (Oryza sativa var. Jackson) plants growing in normal and stress conditions". Plant Science. 161(2):279-287. [doi:10.1016/S0168-9452(01)00411-3]11448759
2001Ramírez-Benítez, M.D., Moreno-Hagelsieb, G, Almagro, J.C.. (2001). "VIR.II: a new interface with the antibody sequences in the Kabat database". Biosystems. 61(2-3):125-131. [doi:10.1016/S0303-2647(01)00166-6]11716972
2001Rogel Hernández, Marco Antonio, Hernández Lucas, Ismael, Kuykendall, L.D., Balkwill, D.L., Martínez Romero, María Esperanza. (2001). "Nitrogen-Fixing Nodules with Ensifer adhaerens Harboring Rhizobium tropici Symbiotic Plasmids". Applied And Environmental Microbiology. 67(7):3264-3268. [doi:10.1128/AEM.67.7.3264-3268.2001]11425750
2001Tan, K., Moreno Hagelsieb, Gabriel, Collado Vides, Pedro Julio, Stormo, G.D.. (2001). "A comparative genomics approach to prediction of new members of regulons". GENOME RESEARCH. 11(4):566-584. [doi:10.1101/gr.149301]11282972
2001Gandara, B., Merino, A.L., Rogel Hernández, Marco Antonio, Martínez Romero, María Esperanza. (2001). "Limited genetic diversity of Brucella spp.". JOURNAL OF CLINICAL MICROBIOLOGY. 39(1):235-240. [doi:10.1128/JCM.39.1.235-240.2001]11136777
2001Arechaga-Ocampo, E, Saenz-Rivera, J, Sarath, G, Klucas, RV, Arredondo-Peter, R. (2001). "Cloning and expression analysis of hemoglobin genes from maize (Zea mays ssp mays) and teosinte (Zea mays ssp parviglumis)". BIOCHIMICA ET BIOPHYSICA ACTA-GENE STRUCTURE AND EXPRESSION. 1522(1):1-8. [doi:10.1016/S0167-4781(01)00288-3]11718894
2001Salgado, H, Santos-Zavaleta, A, Gama-Castro, S, Millen-Zarate, D, Diaz-Peredo, E, Sanchez-Solano, F, Pérez-Rueda, E, Bonavides-Martinez, C, Collado-Vides, J. (2001). "RegulonDB (version 3.2): Transcriptional regulation and operon organization in Escherichia coli K-12". Nucleic Acids Research. 29(1):72-74. [doi:10.1093/nar/29.1.72]11125053
2001Ramirez-Santos, J, Collado-Vides, J, Garcia-Varela, M, Gomez-Eichelmann, MC. (2001). "Conserved regulatory elements of the promoter sequence of the gene rpoH of enteric bacteria". Nucleic Acids Research. 29(2):380-386. [doi:10.1093/nar/29.2.380]11139607
2001Moreno-Hagelsieb, G, Trevino, V, Pérez-Rueda, E, Smith, TF, Collado-Vides, J. (2001). "Transcription unit conservation in the three domains of life: A perspective from Escherichia coli". TRENDS IN GENETICS. 17(4):175-177. [doi:10.1016/S0168-9525(01)02241-7]11275307
2001Dunn, MF, Araiza, G, Finan, TM. (2001). "Cloning and characterization of the pyruvate carboxylase from Sinorhizobium meliloti Rm1021". Archives Of Microbiology. 176(5):355-363. [doi:10.1007/s002030100336]11702077
2001Young, JM, Kuykendall, LD, Martinez-Romero, E, Kerr, A, Sawada, H. (2001). "A revision of Rhizobium Frank 1889, with an emended description of the genus, and the inclusion of all species of Agrobacterium conn 1942 and Allorhizobium undicola de Lajudie et al. 1998 as new combinations: Rhizobium radiobacter, R. rhizogenes, R. rubi, R. undicola and R. vitis". International Journal Of Systematic And Evolutionary Microbiology. 51(1):89-103. [doi:10.1099/00207713-51-1-89]11211278
2001Vilazquez, E, Martinez-Romero, E, Rodriguez-Navarro, DN, Trujillo, ME, Daza, A, Mateos, PF, Martinez-Molina, E, van Berkum, P. (2001). "Characterization of rhizobial isolates of Phaseolus vulgaris by staircase electrophoresis of low-molecular-weight RNA". Applied And Environmental Microbiology. 67(2):1008-1010. [doi:10.1128/AEM.67.2.1008-1010.2001]11157280
2001Fuentes-Ramirez, LE, Bustillos-Cristales, R, Tapia-Hernandez, A, Jimenez-Salgado, T, Wang, ET, Martinez-Romero, E, Caballero-Mellado, J. (2001). "Novel nitrogen-fixing acetic acid bacteria, Gluconacetobacter johannae sp. nov. and Gluconacetobacter azotocaptans sp. nov., associated with coffee plants". International Journal Of Systematic And Evolutionary Microbiology. 51(4):1305-1314. [doi:10.1099/00207713-51-4-1305]11491326
2001Gao, JL, Terefework, ZD, Chen, WX, Lindstrom, K. (2001). "Genetic diversity of Rhizobia isolated from Astragalus adsurgens growing in different geographical regions of China". JOURNAL OF BIOTECHNOLOGY. 91(2-3, SI):155-168. [doi:10.1016/S0168-1656(01)00337-6]11566387
2001Wang, E. T., Martínez Romero, Julio César, López Lara, Isabel María. (2001). "Rhizobium y su destacada simbiosis con plantas". Microbios en Línea. ():-.
2001Chichkova, S, Arellano, J, Vance, CP, Hernandez, G. (2001). "Transgenic tobacco plants that overexpress alfalfa NADH-glutamate synthase have higher carbon and nitrogen content". Journal Of Experimental Botany. 52(364):2079-2087. [doi:10.1093/jexbot/52.364.2079]11604446
2001Hershberg, R., Bejerano, G., Santos-Zavaleta, A, Margalit, H.. (2001). "PromEC: An updated database of Escherichia coli mRNA promoters with experimentally identified transcriptional start sites". Nucleic Acids Research. 29(1):277-277. [doi:10.1093/nar/29.1.277]11125111
2001Pérez-Rueda, E, Collado-Vides, J. (2001). "Common history at the origin of the position - Function correlation in transcriptional regulators in archaea and bacteria". Journal Of Molecular Evolution. 53(3):172-179. [doi:10.1007/s002390010207]11523004
2001Minder, AC, de Rudder, KEE, Narberhaus, F, Fischer, HM, Hennecke, H, Geiger, O. (2001). "Phosphatidylcholine levels in Bradyrhizobium japonicum membranes are critical for an efficient symbiosis with the soybean host plant". Molecular Microbiology. 39(5):1186-1198. [doi:10.1046/j.1365-2958.2001.02325.x]11251836
2001Ramirez-Romero, MA, Tellez-Sosa, J, Barrios, H, Perez-Oseguera, A, Rosas, V, Cevallos, MA. (2001). "RepA negatively autoregulates the transcription of the repABC operon of the Rhizobium etli symbiotic plasmid basic replicon". Molecular Microbiology. 42(1):195-204. [doi:10.1046/j.1365-2958.2001.02621.x]11679078
2001Díaz-Leal, H., Martínez-Bernal, J., Romero, D.. (2001). "Dimension of the fixed point set of a nilpotent endomorphism on the flag variety". BOL SOC MAT MEX. 7(1):23-33.
2001Lopez-Lara, IM, Geiger, O. (2001). "Novel pathway for phosphatidylcholine biosynthesis in bacteria associated with eukaryotes". JOURNAL OF BIOTECHNOLOGY. 91(2-3):211-221. [doi:10.1016/S0168-1656(01)00331-5]11566392
2001Gutierrez-Zamora, ML, Martinez-Romero, E. (2001). "Natural endophytic association between Rhizobium etli and maize (Zea mays L.)". JOURNAL OF BIOTECHNOLOGY. 91(2-3):117-126. [doi:10.1016/S0168-1656(01)00332-7]11566384
2001Batista, S, Catalan, AI, Hernandez-Lucas, I, Martinez-Romero, E, Aguilar, OM, Martinez-Drets, G. (2001). "Identification of a system that allows a Rhizobium tropici dctA mutant to grow on succinate, but not on other C4-dicarboxylates". Canadian Journal Of Microbiology. 47(6):509-518. [doi:10.1139/cjm-47-6-509]11467726
2001Estrada-De los Santos, P, Bustillos-Cristales, R, Caballero-Mellado, J. (2001). "Burkholderia, a genus rich in plant-associated nitrogen fixers with wide environmental and geographic distribution". Applied And Environmental Microbiology. 67(6):2790-2798. [doi:10.1128/AEM.67.6.2790-2798.2001]11375196
2001Fuentes, SI, Allen, DJ, Ortiz-Lopez, A, Hernandez, G. (2001). "Over-expression of cytosolic glutamine synthetase increases photosynthesis and growth at low nitrogen concentrations". Journal Of Experimental Botany. 52(358):1071-1081. [doi:10.1093/jexbot/52.358.1071]11432923
2001Dobbelaere, S, Croonenborghs, A, Thys, A, Ptacek, D, Vanderleyden, J, Dutto, P, Labandera-Gonzalez, C, Caballero-Mellado, J, Aguirre, JF, Kapulnik, Y, Brener, S, Burdman, S, Kadouri, D, Sarig, S, Okon, Y. (2001). "Responses of agronomically important crops to inoculation with Azospirillum". AUSTRALIAN JOURNAL OF PLANT PHYSIOLOGY. 28(9):871-879. [doi:10.1071/PP01074]
2001Lopez-Lara, IM, Geiger, O. (2001). "The nodulation protein NodG shows the enzymatic activity of an 3-oxoacyl-acyl carrier protein reductase". Molecular Plant-Microbe Interactions. 14(3):349-357. [doi:10.1094/MPMI.2001.14.3.349]11277432
2000Valencia-Morales, E, Romero, D. (2000). "Recombination enhancement by replication (RER) in Rhizobium etli". Genetics. 154(3):971-983. 10757747
2000Cevallos Gaos, Miguel Ángel Carlos. (2000). "Armas biológicas". ¿Cómo ves?. 15():10-14.
2000Perez-Rueda, E, Collado-Vides, J. (2000). "The repertoire of DNA-binding transcriptional regulators in Escherichia coli K-12". Nucleic Acids Research. 28(8):1838-1847. [doi:10.1093/nar/28.8.1838]10734204
2000Castillo, P., Márquez, J., Rubluo, A., Hernández, G., Lara, M.. (2000). "Plant regeneration from callus and suspension cultures of Valeriana edulis ssp. procera via simultaneous organogenesis and somatic embryogenesis". Plant Science. 151(2):115-119. [doi:10.1016/S0168-9452(99)00203-4]10808067
2000Salgado, H, Santos-Zavaleta, A, Gama-Castro, S, Millan-Zarate, D, Blattner, FR, Collado-Vides, J. (2000). "RegulonDB (version 3.0): Transcriptional regulation and operon organization in Escherichia coli K-12". Nucleic Acids Research. 28(1):65-67. [doi:10.1093/nar/28.1.65]10592182
2000van Heiden, Jacques, Rios, Alma. F., Collado-Vides, Julio. (2000). "Discovering regulatory elements in non-coding sequences by analysis of spaced dyads". Nucleic Acids Research. 28(8):1808-1818. [doi:10.1093/nar/28.8.1808]10734201
2000Strainic, MG, Sullivan, JJ, Collado-Vides, J, deHaseth, PL. (2000). "Promoter interference in a bacteriophage lambda control region: Effects of a range of interpromoter distances". Journal Of Bacteriology. 182(1):216-220. [doi:10.1128/JB.182.1.216-220.2000]10613884
2000Perez-Rueda, Ernesto, Collado-Vides, Julio. (2000). "The repertoire of DNA-binding transcriptional regulators in Escherichia coli K-12". Nucleic Acids Research. 28(8):1838-1847. [doi:10.1093/nar/28.8.1838]10734204
2000Lira-Ruan K., Sarath G., Klucas R.V., Arredondo-Peter R.. (2000). "Characterization of leghemoglobin from a mimosoid legume, Leucaena esculenta, root nodules". Revista Brasileira de Fisiologia Vegetal. 12(1):37-44.
2000Martinez-Romero, E, Wang, ET, Merino, AL, Caballero-Mellado, J, Rogel, MA, Gandara, B, Toledo, I, Martinez-Iomero, J. (2000). "Ribosomal gene based phylogenies on trial: The case of Rhizobium and related genera". Biology Of Plant-Microbe Interactions, Vol 2. ():59-64.
2000Diouf, A, de Lajudie, P, Neyra, M, Kersters, K, Gillis, M, Martinez-Romero, E, Gueye, M. (2000). "Polyphasic characterization of Rhizobia that nodulate Phaseolus vulgaris in West Africa (Senegal and Gambia)". International Journal Of Systematic And Evolutionary Microbiology. 50(1):159-170. [doi:10.1099/00207713-50-1-159]10826800
2000Luan, P, Arechaga-Ocampo, E, Sarath, G, Arredondo-Peter, R, Klucas, RV. (2000). "Analysis of a ferric leghemoglobin reductase from cowpea (Vigna unguiculata) root nodules". Plant Science. 154(2):161-170. [doi:10.1016/S0168-9452(99)00272-1]10729615
2000Wang, ET, Martinez-Romero, E. (2000). "Sesbania herbacea-Rhizobium huautlense nodulation in flooded soils and comparative characterization of S. herbacea-nodulating Rhizobia in different environments". Microbial Ecology. 40(1):25-32. [doi:10.1007/s002480000010]10977874
2000López-Lara, I.M., Geiger, O.. (2000). "Expression and purification of four different rhizobial acyl carrier proteins". MICROBIOLOGY-SGM. 146(4):839-849. [doi:10.1099/00221287-146-4-839]10784042
2000Weissenmayer, B, Geiger, O, Benning, C. (2000). "Disruption of a gene essential for sulfoquinovosyldiacylglycerol biosynthesis in Sinorhizobium meliloti has no detectable effect on root nodule symbiosis". Molecular Plant-Microbe Interactions. 13(6):666-672. [doi:10.1094/MPMI.2000.13.6.666]10830266
2000Arredondo Peter, José Raúl, Ramírez, Y.M., Sarath, G., Klucas, R.V.. (2000). "SEQUENCE ANALYSIS OF AN ANCIENT HEMOGLOBIN cDNA ISOLATED FROM THE MOSS Physcomitrella patens". Plant Physiology. 122():1457-.
2000Flores, M, Mavingui, P, Perret, X, Broughton, WJ, Romero, D, Hernandez, G, Davila, G, Palacios, R. (2000). "Prediction, identification, and artificial selection of DNA rearrangements in Rhizobium: Toward a natural genomic design". PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 97(16):9138-9143. [doi:10.1073/pnas.97.16.9138]10922070
2000Sohlenkamp, C, Shelden, M, Howitt, S, Udvardi, M. (2000). "Characterization of Arabidopsis AtAMT2, a novel ammonium transporter in plants". FEBS LETTERS. 467(2-3):273-278. [doi:10.1016/S0014-5793(00)01153-4]10675553
2000Martinez-Salazar, JM, Romero, D. (2000). "Role of the ruvB gene in homologous and homeologous recombination in Rhizobium etli". Gene. 243(1-2):125-131. [doi:10.1016/S0378-1119(99)00548-X]10675620
2000Schoenbeck, MA, Temple, SJ, Trepp, GB, Blumenthal, JM, Samac, DA, Gantt, JS, Hernandez, G, Vance, CP. (2000). "Decreased NADH glutamate synthase activity in nodules and flowers of alfalfa (Medicago sativa L.) transformed with an antisense glutamate synthase transgene". Journal Of Experimental Botany. 51(342):29-39. [doi:10.1093/jexbot/51.342.29]10938793
2000Tapia-Hernandez, A, Bustillos-Cristales, MR, Jimenez-Salgado, T, Caballero-Mellado, J, Fuentes-Ramirez, LE. (2000). "Natural endophytic occurrence of Acetobacter diazotrophicus in pineapple plants". Microbial Ecology. 39(1):49-55. [doi:10.1007/s002489900190]10790517
2000Ramirez-Romero, MA, Soberon, N, Perez-Oseguera, A, Tellez-Sosa, J, Cevallos, MA. (2000). "Structural elements required for replication and incompatibility of the Rhizobium etli symbiotic plasmid". Journal Of Bacteriology. 182(11):3117-3124. [doi:10.1128/JB.182.11.3117-3124.2000]10809690
2000Sohlenkamp, C, de Rudder, KEE, Rohrs, V, Lopez-Lara, IM, Geiger, O. (2000). "Cloning and characterization of the gene for phosphatidylcholine synthase". JOURNAL OF BIOLOGICAL CHEMISTRY. 275(25):18919-18925. [doi:10.1074/jbc.M000844200]10858449
2000Brom, S, Garcia-de los Santos, A, Cervantes, L, Palacios, R, Romero, D. (2000). "In Rhizobium etli symbiotic plasmid transfer, nodulation competitivity and cellular growth require interaction among different replicons". Plasmid. 44(1):34-43. [doi:10.1006/plas.2000.1469]10873525
2000Castillo, A, Taboada, H, Mendoza, A, Valderrama, B, Encarnacion, S, Mora, J. (2000). "Role of GOGAT in carbon and nitrogen partitioning in Rhizobium etli". MICROBIOLOGY-SGM. 146(7):1627-1637. [doi:10.1099/00221287-146-7-1627]10878127
2000de Rudder, KEE, Lopez-Lara, IM, Geiger, O. (2000). "Inactivation of the gene for phospholipid N-methyltransferase in Sinorhizobium meliloti: Phosphatidylcholine is required for normal growth". Molecular Microbiology. 37(4):763-772. [doi:10.1046/j.1365-2958.2000.02032.x]10972799
2000van Helden, J., Andre, B., Collado Vides, Pedro Julio. (2000). "A web site for the computational analysis of yeast regulatory sequences". Yeast. 16(2):177-187. <a target="_blank" href="http://dx.doi.org/10.1002/(SICI)1097-0061(20000130)16:23.0.CO;2-9">[doi:10.1002/(SICI)1097-0061(20000130)16:23.0.CO;2-9]10641039
2000Jarabo-Lorenzo, A, Velazquez, E, Perez-Galdona, R, Vega-Hernandez, MC, Martinez-Molina, E, Mateos, PF, Vinuesa, P, Martinez-Romero, E, Leon-Barrios, M. (2000). "Restriction fragment length polymorphism analysis of 16S rDNA and low molecular weight RNA profiling of rhizobial isolates from shrubby legumes endemic to the Canary islands". Systematic And Applied Microbiology. 23(3):418-425. [doi:10.1016/S0723-2020(00)80073-9]11108022
2000Girard Cuesy, María de Lourdes, Brom Klanner, Susana, Dávalos Rodríguez, Araceli Elvira, López, O., Soberón Chávez, Mario, Romero Camarena, David René. (2000). "Differential regulation of fixN-reiterated genes in Rhizobium etli by a novel fixL-fixK cascade". Molecular Plant-Microbe Interactions. 13(12):1283-1292. [doi:10.1094/MPMI.2000.13.12.1283]11106020
2000Hargrove, M.S., Brucker, E.A., Stec, B., Sarath, G., Arredondo-Peter, R, Klucas, R.V., Olson, J.S., Phillips, G.N.. (2000). "Crystal structure of a nonsymbiotic plant hemoglobin". STRUCTURE WITH FOLDING & DESIGN. 8(9):1005-1014. [doi:10.1016/S0969-2126(00)00194-5]10986467
2000Hernández, L., Sotolongo, M., Rosabal, Y., Menéndez, C., Ramírez, R., Caballero Mellado, José de Jesús, Arrieta, J.. (2000). "Structural levansucrase gene (lsdA) constitutes a functional locus conserved in the species Gluconacetobacter diazotrophicus". Archives Of Microbiology. 174(1-2):120-124. [doi:10.1007/s002030000173]10985751
2000Salgado Osorio, Heladia, Moreno Hagelsieb, Gabriel, Smith, T.F., Collado Vides, Pedro Julio. (2000). "Operons in Escherichia coli: Genomic analyses and predictions". PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 97(12):6652-6657. [doi:10.1073/pnas.110147297]10823905
2000Reyes, J.D., Tabche, M.L., Morera, C., Girard Cuesy, María de Lourdes, Romero Camarena, David René, Krol, E., Miranda, J., Soberón Chávez, Mario. (2000). "Expression pattern of Rhizobium etli ccmIEFH genes involved in c-type cytochrome maturation". Gene. 250(1-2):149-157. [doi:10.1016/S0378-1119(00)00176-1]10854788
2000González-Pasayo, R., Martínez Romero, María Esperanza. (2000). "Multiresistance genes of Rhizobium etli CFN42". Molecular Plant-Microbe Interactions. 13(5):572-577. [doi:10.1094/MPMI.2000.13.5.572]10796024
2000Cruz-Vera, L.R., TOLEDO, I, Hernández-Sánchez, J., Guarneros, G. (2000). "Molecular basis for the temperature sensitivity of Escherichia coli pth(Ts)". Journal Of Bacteriology. 182(6):1523-1528. [doi:10.1128/JB.182.6.1523-1528.2000]10692356
1999Cevallos Gaos, Miguel Ángel Carlos. (1999). "La Peste, ayer y hoy". ¿Cómo ves?. 12():22-26.
1999Brom Klanner, Susana, Romero Camarena, David René. (1999). "Plasmid biology 98: international symposium on plasmid biology". Plasmid. 41(2):141-177. 10087219
1999Castillo, M, Flores, M, Mavingui, P, Martinez-Romero, E, Palacios, R, Hernandez, G. (1999). "Increase in alfalfa nodulation, nitrogen fixation, and plant growth by specific DNA amplification in Sinorhizobium meliloti". Applied And Environmental Microbiology. 65(6):2716-2722. [doi:10.1128/aem.65.6.2716-2722.1999]10347066
1999Soberon, M, Lopez, O, Morera, C, Girard, MD, Tabche, ML, Miranda, J. (1999). "Enhanced nitrogen fixation in a Rhizobium etli ntrC mutant that overproduces the Bradyrhizobium japonicum symbiotic terminal oxidase cbb(3)". Applied And Environmental Microbiology. 65(5):2015-2019. 10223993
1999Wang, ET, van Berkum, P, Sui, XH, Beyene, D, Chen, WX, Martinez-Romero, E. (1999). "Diversity of Rhizobia associated with Amorpha fruticosa isolated from Chinese soils and description of Mesorhizobium amorphae sp. nov.". INTERNATIONAL JOURNAL OF SYSTEMATIC BACTERIOLOGY. 49(1):51-65. [doi:10.1099/00207713-49-1-51]10028247
1999Collado Vides, Pedro Julio, Hofestadt, R., Mavrovouniotis, M., Michal, G.. (1999). "Modeling and simulation of gene regulation and metabolic pathways". Biosystems. 49(1):79-82. [doi:10.1016/S0303-2647(98)00081-1]10091975
1999Corvera Poire, Adriana De La Concepción, Prome, D., Prome, J.C., Martínez Romero, María Esperanza, Romero Camarena, David René. (1999). "The nolL gene from Rhizobium etli determines nodulation efficiency by mediating the acetylation of the fucosyl residue in the nodulation factor". Molecular Plant-Microbe Interactions. 12(3):236-246. [doi:10.1094/MPMI.1999.12.3.236]10065560
1999Laeremans, T., Snoeck, C., Marien, J., Verreth, C., Martínez Romero, María Esperanza, Prome, J.C., Vanderleyden, J.. (1999). "Phaseolus vulgaris recognizes Azorhizobium caulinodans nod factors with a variety of chemical substituents". Molecular Plant-Microbe Interactions. 12(9):820-824. [doi:10.1094/MPMI.1999.12.9.820]10494633
1999Wang, ET, Roel, MA, Garcia-de los Santos, A, Martinez-Romero, Julio, Cevallos, MA, Martinez-Romero, E. (1999). "Rhizobium etli bv. mimosae, a novel biovar isolated from Mimosa affinis". INTERNATIONAL JOURNAL OF SYSTEMATIC BACTERIOLOGY. 49(4):1479-1491. [doi:10.1099/00207713-49-4-1479]10555329
1999Barrón, C., Gómez, S., Romero, D., Saavedra, A.. (1999). "A genetic algorithm for Lennard-Jones atomic clusters". Applied Mathematics Letters. 12(7):85-90. [doi:10.1016/S0893-9659(99)00106-8]
1999Romero, D., Barrón, C., Gómez, S.. (1999). "The optimal geometry of Lennard-Jones clusters: 148-309". COMPUT PHYS COMMUN. 123(1-3):87-96. [doi:10.1016/s0010-4655(99)00259-3]
1999Thieffry, D., Romero, D.. (1999). "The modularity of biological regulatory networks.". Biosystems. 50(1):49-59. [doi:10.1016/s0303-2647(98)00087-2]10235650
1999de Rudder, KEE, Sohlenkamp, C, Geiger, O. (1999). "Plant-exuded choline is used for rhizobial membrane lipid biosynthesis by phosphatidylcholine synthase". JOURNAL OF BIOLOGICAL CHEMISTRY. 274(28):20011-20016. [doi:10.1074/jbc.274.28.20011]10391951
1999Moreno-Hagelsieb, G, Gomez-Puyou, A, Soberon, X. (1999). "Escherichia coli TEM1 beta-lactamase in CTAB reverse micelles: exchange/diffusion-limited catalysis". FEBS LETTERS. 459(1):111-114. [doi:10.1016/S0014-5793(99)01228-4]10508927
1999Wang, ET, Martinez-Romero, J, Martinez-Romero, E. (1999). "Genetic diversity of Rhizobia from Leucaena leucocephala nodules in Mexican soils". MOLECULAR ECOLOGY. 8(5):711-724. [doi:10.1046/j.1365-294X.1999.00608.x]
1999Fuentes-Ramirez, LE, Caballero-Mellado, J, Sepulveda, J, Martinez-Romero, E. (1999). "Colonization of sugarcane by Acetobacter diazotrophicus is inhibited by high N-fertilization". Fems Microbiology Ecology. 29(2):117-128. [doi:10.1016/S0168-6496(98)00125-1]
1999Salgado, H, Santos, A, Garza-Ramos, U, van Helden, J, Diaz, E, Collado-Vides, J. (1999). "RegulonDB (version 2.0): A database on transcriptional regulation in Escherichia coli". Nucleic Acids Research. 27(1):59-60. [doi:10.1093/nar/27.1.59]9847141
1999Herrera-Cervera, JA, Caballero-Mellado, J, Laguerre, G, Tichy, HV, Requena, N, Amarger, N, Martinez-Romero, E, Olivares, J, Sanjuan, J. (1999). "At least five rhizobial species nodulate Phaseolus vulgaris in a Spanish soil". Fems Microbiology Ecology. 30(1):87-97. [doi:10.1016/S0168-6496(99)00044-6]
1999Caballero-Mellado, J, Lopez-Reyes, L, Bustillos-Cristales, R. (1999). "Presence of 16S rRNA genes in multiple replicons in Azospirillum brasilense". Fems Microbiology Letters. 178(2):283-288. [doi:10.1111/j.1574-6968.1999.tb08689.x]
1999Tan, ZY, Wang, ET, Peng, GX, Zhu, ME, Martinez-Romero, E, Chen, WX. (1999). "Characterization of bacteria isolated from wild legumes in the north- western regions of China". INTERNATIONAL JOURNAL OF SYSTEMATIC BACTERIOLOGY. 49(4):1457-1469. [doi:10.1099/00207713-49-4-1457]10555327
1999Phillips, DA, Joseph, CM, Yang, GP, Martinez-Romero, E, Sanborn, JR, Volpin, H. (1999). "Identification of lumichrome as a Sinorhizobium enhancer of alfalfa root respiration and shoot growth". PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 96(22):12275-12280. [doi:10.1073/pnas.96.22.12275]10535912
1999Romero, D, Martinez-Salazar, J, Ortiz, E, Rodriguez, C, Valencia-Morales, E. (1999). "Repeated sequences in bacterial chromosomes and plasmids: A glimpse from sequenced genomes". Research In Microbiology. 150(9-10):735-743. [doi:10.1016/S0923-2508(99)00119-9]10673011
1999Ramirez, M, Valderrama, B, Arredondo-Peter, R, Soberon, M, Mora, J, Hernandez, G. (1999). "Rhizobium etli genetically engineered for the heterologous expression of Vitreoscilla sp. hemoglobin: Effects on free-living and symbiosis". Molecular Plant-Microbe Interactions. 12(11):1008-1015. [doi:10.1094/MPMI.1999.12.11.1008]
1999Caballero-Mellado, J, Martinez-Romero, E. (1999). "Soil fertilization limits the genetic diversity of Rhizobium in bean nodules". Symbiosis. 26(2):111-121.
1998Flores, M, Mavingui, P, Girard, L, Perret, X, Broughton, WJ, Martinez-Romero, E, Davila, G, Palacios, R. (1998). "Three replicons of Rhizobium sp. strain NGR234 harbor symbiotic gene sequences". Journal Of Bacteriology. 180(22):6052-6053. [doi:10.1128/JB.180.22.6052-6053.1998]9811668
1998Thieffry, D, Salgado, H, Huerta, AM, Collado-Vides, J. (1998). "Prediction of transcriptional regulatory sites in the complete genome sequence of Escherichia coli K-12". Bioinformatics. 14(5):391-400. [doi:10.1093/bioinformatics/14.5.391]9682052
1998Collado-Vides, J, Gutierrez-Rios, RM, Bel-Enguix, G. (1998). "Networks of transcriptional regulation encoded in a grammatical model". Biosystems. 47(1-2):103-118. [doi:10.1016/S0303-2647(98)00016-1]9715754
1998Huerta, AM, Salgado, H, Thieffry, D, Collado-Vides, J. (1998). "RegulonDB: A database on transcriptional regulation in Escherichia coli". Nucleic Acids Research. 26(1):55-59. [doi:10.1093/nar/26.1.55]9399800
1998Olsthoorn, M.A., López Lara, Isabel María, Petersen, B.O., Bock, K., Haverkamp, J., Spaink, H.P., Thomas Oates, J.E.. (1998). "Novel branched Nod factor structure results from -(1 3) fucosyl transferase activity: the major lipo-chitin oligosaccharides from Mesorhizobium loti strain NZP2213 bear an -(1 3) fucosyl subtituent on a nonterminal backbone residue". Biochemistry. 37(25):9024-9032.
1998van Helden, J., Andre, B., Collado Vides, Pedro Julio. (1998). "Extracting regulatory sites from the upstream region of yeast genes by computational analysis of oligonucleotide frequencies". Journal Of Molecular Biology. 281(5):827-842. [doi:10.1006/jmbi.1998.1947]9719638
1998Mandon, K, Michel-Reydellet, N, Encarnacion, S, Kaminski, PA, Leija, A, Cevallos, MA, Elmerich, C, Mora, J. (1998). "Poly-ß-hydroxybutyrate turnover in Azorhizobium caulinodans is required for growth and affects nifA expression". Journal Of Bacteriology. 180(19):5070-5076. [doi:10.1128/JB.180.19.5070-5076.1998]9748438
1998Rosenblueth, M, Hynes, MF, Martinez-Romero, E. (1998). "Rhizobium tropici teu genes involved in specific uptake of Phaseolus vulgaris bean-exudate compounds". MOLECULAR & GENERAL GENETICS. 258(6):587-598. [doi:10.1007/s004380050772]9671027
1998Encarnacion, S, Calderon, J, Gelbard, AS, Cooper, AJL, Mora, J. (1998). "Glutamine biosynthesis and the utilization of succinate and glutamine by Rhizobium etli and Sinorhizobium meliloti". MICROBIOLOGY-SGM. 144(9):2629-2638. [doi:10.1099/00221287-144-9-2629]9782512
1998Arredondo-Peter, R, Hargrove, M.S., Moran, J.F., Sarath, G., Klucas, R.V.. (1998). "Plant hemoglobins". Plant Physiology. 118(4):1121-1125. [doi:10.1104/pp.118.4.1121]9847086
1998Wang, ET, van Berkum, P., Beyene, D., Sui, X.H., Dorado, O., Chen, W.X., Martinez-Romero, E. (1998). "Rhizobium huautlense sp. nov., a symbiont of Sesbania herbacea that has a close phylogenetic relationship with Rhizobium galegae". INTERNATIONAL JOURNAL OF SYSTEMATIC BACTERIOLOGY. 48(3):687-699. [doi:10.1099/00207713-48-3-687]9734023
1998Thieffry Jacot-Descombes, Denis Louis, Huerta Moreno, Araceli, Pérez Rueda, Ernesto, Collado Vides, Pedro Julio. (1998). "From specific gene regulation to genomic networks: A global analysis of transcriptional regulation in Escherichia coli". Bioessays. 20(5):433-440. <a target="_blank" href="http://dx.doi.org/10.1002/(SICI)1521-1878(199805)20:53.0.CO;2-2">[doi:10.1002/(SICI)1521-1878(199805)20:53.0.CO;2-2]9670816
1998Pérez Rueda, Ernesto, Gralla, J.D., Collado Vides, Pedro Julio. (1998). "Genomic position analyses and the transcription machinery". Journal Of Molecular Biology. 275(2):165-170. [doi:10.1006/jmbi.1997.1465]9466899
1998Laeremans, T, Martinez-Romero, E, Vanderleyden, J. (1998). "Isolation and sequencing of a second Rhizobium tropici CFN299 genetic locus that contains genes homologous to amino acid sulphate activation genes". Dna Sequence. 9(1):65-70. [doi:10.3109/10425179809050027]9773278
1998Mavingui, P, Laeremans, T, Flores, M, Romero, D, Martinez-Romero, E, Palacios, R. (1998). "Genes essential for nod factor production and nodulation are located on a symbiotic amplicon (AMPRtrCFN299pc60) in Rhizobium tropici". Journal Of Bacteriology. 180(11):2866-2874. [doi:10.1128/JB.180.11.2866-2874.1998]9603874
1998Perez-Ramirez, NO, Rogel, MA, Wang, E, Castellanos, JZ, Martinez-Romero, E. (1998). "Seeds of Phaseolus vulgaris bean carry Rhizobium etli". Fems Microbiology Ecology. 26(4):289-296. [doi:10.1016/S0168-6496(98)00043-9]
1998Vasquez-Arroyo, J, Sessitsch, A, Martinez, E, Pena-Cabriales, JJ. (1998). "Nitrogen fixation and nodule occupancy by native strains of Rhizobium on different cultivars of common bean (Phaseolus vulgaris L.)". PLANT AND SOIL. 204(1):147-154. [doi:10.1023/A:1004399531966]
1998Hernandez-Sanchez, J, Valadez, JG, Herrera, JV, Ontiveros, C, Guarneros, G. (1998). "lambda bar minigene-mediated inhibition of protein synthesis involves accumulation of peptidyl-tRNA and starvation for tRNA". EMBO JOURNAL. 17(13):3758-3765. [doi:10.1093/emboj/17.13.3758]9649445
1998Dunn, MF. (1998). "Tricarboxylic acid cycle and anaplerotic enzymes in Rhizobia". Fems Microbiology Reviews. 22(2):105-123. [doi:10.1016/S0168-6445(98)00010-2]9729766
1998Ludwig, W, Amann, R, Martinez-Romero, E, Schonhuber, W, Bauer, S, Neef, A, Schleifer, KH. (1998). "rRNA based identification and detection systems for Rhizobia and other bacteria". PLANT AND SOIL. 204(1):1-19. [doi:10.1023/A:1004350708767]
1998Martinez-Romero, E, Hernandez-Lucas, I, Pena-Cabriales, JJ, Castellanos, JZ. (1998). "Symbiotic performance of some modified Rhizobium etli strains in assays with Phaseolus vulgaris beans that have a high capacity to fix N2". PLANT AND SOIL. 204(1):89-94. [doi:10.1023/A:1004383028331]
1998Sievers, M, Schlegel, HG, Caballero-Mellado, J, Dobereiner, J, Ludwig, W. (1998). "Phylogenetic identification of two major nitrogen-fixing bacteria associated with sugarcane". Systematic And Applied Microbiology. 21(4):505-508. [doi:10.1016/S0723-2020(98)80062-3]9924818
1998Mendoza, A, Valderrama, B, Leija, A, Mora, J. (1998). "nifA-dependent expression of glutamate dehydrogenase in Rhizobium etli modifies nitrogen partitioning during symbiosis". Molecular Plant-Microbe Interactions. 11(2):83-90. [doi:10.1094/MPMI.1998.11.2.83]9450332
1998Rodriguez, C, Romero, D. (1998). "Multiple recombination events maintain sequence identity among members of the nitrogenase multigene family in Rhizobium etli". Genetics. 149(2):785-794. 9611191
1997Collado-Vides, J, Huerta, AM, Klose, K. (1997). "Three models of gene regulation in E. coli". LECT NOTES COMPUT SC. 1278():72-78.
1997Thieffry Jacot-Descombes, Denis Louis, Rosenblueth, D.A., Huerta Moreno, Araceli, Salgado Osorio, Heladia, Collado Vides, Pedro Julio. (1997). "Definite-clause grammars for the analysis of CIS-regulatory regions in E. coli.". Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing. ():441-452. 9390313
1997Blattner, FR, Plunkett, G, Bloch, CA, Perna, NT, Burland, V, Riley, M, ColladoVides, J, Glasner, JD, Rode, CK, Mayhew, GF, Gregor, J, Davis, NW, Kirkpatrick, HA, Goeden, MA, Rose, DJ, Mau, B, Shao, Y. (1997). "The complete genome sequence of Escherichia coli K-12". Science. 277(5331):1453-1462. [doi:10.1126/science.277.5331.1453]9278503
1997Barrera, LL, Trujillo, ME, Goodfellow, M, Garcia, FJ, HernandezLucas, I, Davila, G, vanBerkum, P, MartinezRomero, E. (1997). "Biodiversity of bradyrhizobia nodulating Lupinus spp.". INTERNATIONAL JOURNAL OF SYSTEMATIC BACTERIOLOGY. 47(4):1086-1091. [doi:10.1099/00207713-47-4-1086]9336911
1997Hernandez, J, Ontiveros, C, Valadez, JG, Buckingham, RH, Guarneros, G. (1997). "Regulation of protein synthesis by minigene expression". Biochimie. 79(8):527-531. [doi:10.1016/S0300-9084(97)82746-0]9451455
1997RamirezRomero, MA, Bustos, P, Girard, L, Rodriguez, O, Cevallos, MA, Davila, G. (1997). "Sequence, localization and characteristics of the replicator region of the symbiotic plasmid of Rhizobium etli". MICROBIOLOGY-SGM. 143(8):2825-2831. [doi:10.1099/00221287-143-8-2825]9274036
1997Romero Camarena, David René, Palacios de la Lama, Rafael. (1997). "Gene amplification and genomic plasticity in prokaryotes". Annual Review of Genetics. 31():91-111. [doi:10.1146/annurev.genet.31.1.91]9442891
1997Jiménez-Salgado, T., FuentesRamirez, LE, Tapia-Hernández, A., Mascarua-Esparza, M.A., Martinez-Romero, Esperanza, CaballeroMellado, J. (1997). "Coffea arabica L., a new host plant for Acetobacter diazotrophicus, and isolation of other nitrogen-fixing acetobacteria". Applied And Environmental Microbiology. 63(9):3676-3683. [doi:10.1128/AEM.63.9.3676-3683.1997]9293018
1997Tan, Z.Y., Xu, X.D., Wang, E.T., Gag, J.L., MartinezRomero, E, Chen, W.X.. (1997). "Phylogenetic and genetic relationships of Mesorhizobium tianshanense and related Rhizobia". INTERNATIONAL JOURNAL OF SYSTEMATIC BACTERIOLOGY. 47(3):874-879. [doi:10.1099/00207713-47-3-874]9226921
1997Calderón, J., Olvera, L, Martinez, LM, Davila, G. (1997). "A Neurospora crassa mutant altered in the regulation of L-amino acid oxidase". MICROBIOLOGY-SGM. 143(6):1969-1974. [doi:10.1099/00221287-143-6-1969]9202472
1997Mavingui Malonda, Aime Dieudonne Patrick, Flores López, Margarita, Romero Camarena, David René, Martínez Romero, María Esperanza, Palacios de la Lama, Rafael. (1997). "Generation of Rhizobium Strains with Improved Symbiotic Properties by Random Dna Amplification (RDA)". Nature Biotechnology. 15(6):564-569. [doi:10.1038/nbt0697-564]9181580
1997Ontiveros, C, Valadez, JG, Hernandez, J, Guarneros, G. (1997). "Inhibition of Escherichia coli protein synthesis by abortive translation of phage lambda minigenes". Journal Of Molecular Biology. 269(2):167-175. [doi:10.1006/jmbi.1997.1017]9191062
1997MirandaRios, J, Morera, C, Taboada, H, Davalos, A, Encarnacion, S, Mora, J, Soberon, M. (1997). "Expression of thiamin biosynthetic genes (thiCOGE) and production of symbiotic terminal oxidase cbb(3), in Rhizobium etli". Journal Of Bacteriology. 179(22):6887-6893. [doi:10.1128/jb.179.22.6887-6893.1997]9371431
1997Laeremans, T, Coolsaet, N, Verreth, C, Snoeck, C, Hellings, N, Vanderleyden, J, Martinez-Romero, E. (1997). "Functional redundancy of genes for sulphate activation enzymes in Rhizobium sp. BR816". MICROBIOLOGY-SGM. 143(12):3933-3942. [doi:10.1099/00221287-143-12-3933]9421916
1997GarciadelosSantos, A, Brom, S. (1997). "Characterization of two plasmid-borne lps beta loci of Rhizobium etli required for lipopolysaccharide synthesis and for optimal interaction with plants". Molecular Plant-Microbe Interactions. 10(7):891-902. [doi:10.1094/MPMI.1997.10.7.891]9304861
1997Chichkova, S, Arellano, J, Svoboda, S, Hernandez, G. (1997). "Ectopic overexpression of NADH-glutamate synthase in transgenic tobacco modifies plant response to excess of ammonium.". Plant Physiology. 114(3, S):911-911.
1997Dunn, MF, Araiza, G, Cevallos, MA, Mora, J. (1997). "Regulation of pyruvate carboxylase in Rhizobium etli". Fems Microbiology Letters. 157(2):301-306. [doi:10.1016/S0378-1097(97)00491-6]9435112
1997Quinto, C., Wijfjes, A.H.M., Bloemberg, G.V., Blok-Tip, L., López-Lara, I.M., Lugtenberg, B.J.J., Thomas-Oates, J.E., Spaink, H.P.. (1997). "Bacterial nodulation protein nodZ is a chitin oligosaccharide fucosyltransferase which can also recognize related substrates of animal origin". PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 94(9):4336-4341. [doi:10.1073/pnas.94.9.4336]9113990
1997Spaink, H.P., Bakkers, J., Bladergroen, M., Bloemberg, G. V., Dandal, I., Díaz, C.L., Blok Tip, L., Gisel, A., Harteveld, M., López Lara, Isabel María, Kafetzopoulos, D., Kamst, E., Kijne, J.W., Meijer, D., Lugtenberg, B., Ovtsyna, A.O., Potrykus, I., Quaedvlieg, N.E.M., Quinto, C., Ritsema, T., Sautter, C., Schlaman, H.R.M., Thomas Oates, J.E., van Boom, J.H., van der Drift, K., van der Marel, G.A., van Leeuwen, S., Veldhuis, A., Wijfjes, A.H.M.. (1997). "The molecular basis of host specificity of Rhizobia". Biology of plant-microbe interactions: Proceedings of the 8th. International Symposium on Molecular Plant-Microbr Interactions, Knoxville, Tennessee, july 14-19, 1996. 1():299-306.
1997Romero, D., Sánchez-Flores, A.. (1997). "Omnipotence in stretchable two-dimensional scaling". MATH SOC SCI. 33(1):1-21. [doi:10.1016/S0165-4896(96)00817-7]
1997Barrón, C., Gómez, S., Romero, D.. (1997). "Lower energy icosahedral atomic clusters with incomplete core". Applied Mathematics Letters. 10(5):25-28. [doi:10.1016/S0893-9659(97)00078-5]
1997AguilarGaytan, R, Cerbon, MA, Cevallos, MA, Lizano, M, Huberman, A. (1997). "Sequence of a cDNA encoding the molt-inhibiting hormone from the Mexican crayfish Procambarus bouvieri (Crustacea, Decapoda)". ASIA-PACIFIC JOURNAL OF MOLECULAR BIOLOGY AND BIOTECHNOLOGY. 5(1):51-55.
1997Thieffry, D. (1997). "Contributions of the ''Rouge-Cloitre group'' to the notion of ''messenger RNA''". HISTORY AND PHILOSOPHY OF THE LIFE SCIENCES. 19(1):89-111. 9284644
1996Pérez Oseguera, María de los Angeles, GUERECA, LEOPOLDO. (1996). "Acceptor Reactions of Levansucrase from Bacillus circulans. Enzyme Eng. XIII Annals. New York Academy of Science.". Acceptor Reactions of Levansucrase from Bacillus circulans. Vol 799():743-746.
1996Romero, D., Martinez, L., Fionova, L.. (1996). "Computer simulation of grain boundary spatial distribution in a three-dimensional polycrystal with cubic structure". Acta Mater. 44(1):391-402. [doi:10.1016/1359-6454(95)00142-X]
1996Taboada, H, Encarnacion, S, Vargas, MD, Mora, Y, MartinezRomero, E, Mora, J. (1996). "Glutamine synthetase II constitutes a novel taxonomic marker in Rhizobium etli and other Rhizobium species". INTERNATIONAL JOURNAL OF SYSTEMATIC BACTERIOLOGY. 46(2):485-491. [doi:10.1099/00207713-46-2-485]
1996Dunn, MF, Encarnacion, S, Araiza, G, Vargas, MC, Davalos, A, Peralta, H, Mora, Y, Mora, J. (1996). "Pyruvate carboxylase from Rhizobium etli: Mutant characterization, nucleotide sequence, and physiological role". Journal Of Bacteriology. 178(20):5960-5970. [doi:10.1128/jb.178.20.5960-5970.1996]8830693
1996Barrón, C., Gómez, S., Romero, D.. (1996). "Archimedean polyhedron structure yields a lower energy atomic cluster". Applied Mathematics Letters. 9(5):75-78. [doi:10.1016/0893-9659(96)00076-6]
1996Martinez-Romero, Esperanza, Caballero-Mellado, J.. (1996). "Rhizobium phylogenies and bacterial genetic diversity". CRITICAL REVIEWS IN PLANT SCIENCES. 15(2):113-140. [doi:10.1080/07352689609701938]
1996Folch Mallol, J.L., Marroqui, S., Sousa, C., Manyani, H., López Lara, Isabel María, van der Drift, K.M.G.M., Haverkamp, J., Quinto, C., Gil Serrano, A., Thomas Oates, J.E., Spaink, H.P., Megías, M.. (1996). "Characterization of Rhizobium tropici CIAT899 nodulation factors: the role of nodH and nodPQ in their sulphation". Molecular Plant-Microbe Interactions. 9(3):151-163.
1996Girard, L, Valderrama, B, Palacios, R, Romero, D, Davila, G. (1996). "Transcriptional activity of the symbiotic plasmid of Rhizobium etli is affected by different environmental conditions". MICROBIOLOGY-SGM. 142(10):2847-2856. [doi:10.1099/13500872-142-10-2847]
1996Laeremans, T., Caluwaerts, I., Verreth, C., Rogel Hernández, Marco Antonio, Vanderleyden, J., Martínez Romero, María Esperanza. (1996). "Isolation and characterization of the Rhizobium tropici nod factor sulfation genes". Molecular Plant-Microbe Interactions. 9(6):492-500. [doi:10.1094/MPMI-9-0492]8755625
1996Valderrama, B, Davalos, A, Girard, L, Morett, E, Mora, J. (1996). "Regulatory proteins and CIS-acting elements involved in the transcriptional control of Rhizobium etli reiterated nifH genes". Journal Of Bacteriology. 178(11):3119-3126. [doi:10.1128/jb.178.11.3119-3126.1996]8655489
1996Thieffry, D. (1996). "Escherichia coli as a model system with which to study cell differentiation". HISTORY AND PHILOSOPHY OF THE LIFE SCIENCES. 18(2):163-193. 9122371
1996De La Vega, F.M., Galindo, J.M., Old, L.G., Guarneros, G. (1996). "Microbial genes homologous to the peptidyl-tRNA hydrolase-encoding gene of Escherichia coli". Gene. 169(1):97-100. [doi:10.1016/0378-1119(95)00823-3]8635758
1996Arellano, J, Vazquez, F, Villegas, T, Hernandez, G. (1996). "Establishment of transformed root cultures of Perezia cuernavacana producing the sesquiterpene quinone perezone". PLANT CELL REPORTS. 15(7):455-458. 24178452
1996Santos, AGD, Brom, S, Romero, D. (1996). "Rhizobium plasmids in bacteria-legume interactions". World Journal Of Microbiology & Biotechnology. 12(2):119-125. [doi:10.1007/BF00364676]24415159
1996Cevallos, MA, Encarnacion, S, Leija, A, Mora, Y, Mora, J. (1996). "Genetic and physiological characterization of a Rhizobium etli mutant strain unable to synthesize poly-ß-hydroxybutyrate". Journal Of Bacteriology. 178(6):1646-1654. [doi:10.1128/jb.178.6.1646-1654.1996]8626293
1996MartinezRomero, E, CaballeroMellado, J. (1996). "Rhizobium phylogenies and bacterial genetic diversity". CRITICAL REVIEWS IN PLANT SCIENCES. 15(2):113-140. [doi:10.1080/713608131]
1996Thieffry, D, Burian, RM. (1996). "Jean Brachet's alternative scheme for protein synthesis". TRENDS IN BIOCHEMICAL SCIENCES. 21(3):114-117. [doi:10.1016/S0968-0004(96)10015-3]8882586
1996Thomas-Oates, J.E., van den Berg, J.D.J., Bloemberg, G.V., van der Drift, K.M.G.M.,, Geiger, Otto, López Lara, Isabel María, Rademaker, G.J., Spaink, H.P.. (1996). "Structural determination and biosynthetic studies of the rhizobial Nod metabolites: the lipo-chitin oligosaccharides". Mass spectrometry in the Biological Sciences. ():385-401. [doi:10.1007/978-1-4612-0229-5]
1996ColladoVides, J. (1996). "Towards a unified grammatical model of s70 and s54 bacterial promoters". Biochimie. 78(5):351-363. [doi:10.1016/0300-9084(96)84767-5]8905154
1996Rosenblueth, DA, Thieffry, D, Huerta, AM, Salgado, H, ColladoVides, J. (1996). "Syntactic recognition of regulatory regions in Escherichia coli". COMPUTER APPLICATIONS IN THE BIOSCIENCES. 12(5):415-422. [doi:10.1093/bioinformatics/12.5.415]8996790
1996MartinezRomero, E. (1996). "Comments on Rhizobium systematics. Lessons from R-tropici and R-etli.". Biology of Plant-Microbe Interactions. ():503-508.
1996Hofestadt, R., Mavrovouniotis, M., Collado Vides, Pedro Julio, Loffler, M.. (1996). "Modeling and simulation of metabolic pathways, gene regulation and cell differentiation. International Conference and Research Center for Computer Science, Schloss Dagstuhl, Saarland, Germany, 22-27 October, 1995". Bioessays. 18(4):333-335. [doi:10.1002/bies.950180412]8967902
1995HERNANDEZLUCAS, I, PARDO, MA, SEGOVIA, L, MIRANDA, J, MARTINEZROMERO, E. (1995). "Rhizobium tropici chromosomal citrate synthase gene". Applied And Environmental Microbiology. 61(11):3992-3997. [doi:10.1128/aem.61.11.3992-3997.1995]8526514
1995López-Lara, I.M., van Der Drift, K.M.G.M., van Brussel, A.A.N., Haverkamp, J., Lugtenberg, B.J.J., Thomas-Oates, J.E., Spaink, H.P.. (1995). "Induction of nodule primordia on Phaseolus and Acacia by lipo-chitin oligosaccharide nodulation signals from broad-host-range Rhizobium strain GRH2". PLANT MOLECULAR BIOLOGY. 29(3):465-477. [doi:10.1007/BF00020978]8534846
1995HERNANDEZLUCAS, I, SEGOVIA, L, MARTINEZROMERO, E, PUEPPKE, SG. (1995). "Phylogenetic relationships and host range of Rhizobium spp. that nodulate Phaseolus vulgaris L.". Applied And Environmental Microbiology. 61(7):2775-2779. [doi:10.1128/AEM.61.7.2775-2779.1995]7618891
1995HERNANDEZ, G, RAMIREZ, M, SUAREZ, R, FUENTES, SI. (1995). "ROOT EXUDED nod-GENE INDUCING SIGNALS LIMIT THE NODULATION CAPACITY OF DIFFERENT ALFALFA VARIETIES WITH Rhizobium-meliloti". PLANT CELL REPORTS. 14(10):626-629. [doi:10.1007/BF00232726]24194309
1995CABALLEROMELLADO, J, FUENTESRAMIREZ, LE, REIS, VM, MARTINEZROMERO, E. (1995). "GENETIC-STRUCTURE OF Acetobacter-diazotrophicus POPULATIONS AND IDENTIFICATION OF A NEW GENETICALLY DISTANT GROUP". Applied And Environmental Microbiology. 61(8):3008-3013. [doi:10.1128/AEM.61.8.3008-3013.1995]16535102
1995López Lara, Isabel María, van den Berg, J.D.J., Thomas-Oates, J.E., Glushka, J., Lugtenberg, B.J.J., Spaink, H.P.. (1995). "Structural identification of the iipo-chitin oligosaccharide nodulation signals of Rhizobium loti". Molecular Microbiology. 15(4):627-638. [doi:10.1111/j.1365-2958.1995.tb02372.x]7783635
1995López Lara, Isabel María, Orgambide, O., Dazzo, F.B., Olivares, J., Toro, N.. (1995). "Surface polysaccharide mutants of Rhizobium sp. (Acacia) strain GRH2: Major requirement of lipopolysaccharide for successful invasion of Acacia nodules and host range determination". MICROBIOLOGY-SGM. 141(3):573-581. [doi:10.1099/13500872-141-3-573]7711895
1995ENCARNACION, S, DUNN, M, WILLMS, K, MORA, J. (1995). "Fermentative and aerobic metabolism in Rhizobium etli". Journal Of Bacteriology. 177(11):3058-3066. [doi:10.1128/jb.177.11.3058-3066.1995]7768801
1995LOHRKE, SM, ORF, JH, MARTINEZROMERO, E, SADOWSKY, MJ. (1995). "HOST-CONTROLLED RESTRICTION OF NODULATION BY Bradyrhizobium-japonicum STRAINS IN SEROGROUP-110". Applied And Environmental Microbiology. 61(6):2378-2383. [doi:10.1128/AEM.61.6.2378-2383.1995]16535054
1995GENIAUX, E, FLORES, M, PALACIOS, R, MARTINEZ, E. (1995). "Presence of megaplasmids in Rhizobium tropici and further evidence of differences between the two R. tropici subtypes". INTERNATIONAL JOURNAL OF SYSTEMATIC BACTERIOLOGY. 45(2):392-394. [doi:10.1099/00207713-45-2-392]
1995POUPOT, R, MARTINEZROMERO, E, GAUTIER, N, PROME, JC. (1995). "Wild type Rhizobium etli, a bean symbiont, produces acetylfucosylated, N-methylated, and carbamoylated nodulation factors". JOURNAL OF BIOLOGICAL CHEMISTRY. 270(11):6050-6055. [doi:10.1074/jbc.270.11.6050]7890737
1995DURAN, S, CALDERON, J. (1995). "ROLE OF THE GLUTAMINE TRANSAMINASE-OMEGA-AMIDASE PATHWAY AND GLUTAMINASE IN GLUTAMINE DEGRADATION IN Rhizobium-ETLI". MICROBIOLOGY-SGM. 141(3):589-595. [doi:10.1099/13500872-141-3-589]
1995Cárdenas, L., Domínguez, J., Quinto, C., López-Lara, I.M., Lugtenberg, B.J.J., Spaink, H.P., Rademaker, G.J., Haverkamp, J., Thomas-Oates, J.E.. (1995). "Isolation, chemical structures and biological activity of the lipo-chitin oligosaccharide nodulation signals from Rhizobium etli". PLANT MOLECULAR BIOLOGY. 29(3):453-464. [doi:10.1007/BF00020977]8534845
1995Peralta Díaz, Humberto, CALDERON JIMENEZ, JORGE, DU PONT, GISELA, DURAN, SOCORRO, HUERTA SAQUERO, ALEJANDRA. (1995). "El metabolismo de nitrógeno y carbono en Rhizobium en vida libre y en simbiosis con leguminosas.". Biotecnologia Aplicada. 3(5):208-223.
1995ROMERO, D, MARTINEZSALAZAR, J, GIRARD, L, BROM, S, DAVILA, G, PALACIOS, R, FLORES, M, RODRIGUEZ, C. (1995). "Discrete amplifiable regions (amplicons) in the symbiotic plasmid of Rhizobium etli CFN42". Journal Of Bacteriology. 177(4):973-980. [doi:10.1128/jb.177.4.973-980.1995]7860608
1995Poupot, R., Martínez Romero, María Esperanza, Maillet, F., Promé, J.C.. (1995). "Rhizobium tropici nodulation factor sulfation is limited by the quantity of activated form of sulfate". FEBS LETTERS. 368(3):536-540. [doi:10.1016/0014-5793(95)00737-T]7635216
1995Mendoza Herrera, Alberto, Leija Salas, Alfonso, Martínez Romero, María Esperanza, Hernández Delgado, Georgina, Mora Celis, Jaime. (1995). "The enhancement of ammonium assimilation in Rhizobium etli prevents nodulation of Phaseolus vulgaris". Molecular Plant-Microbe Interactions. 8(4):584-592. [doi:10.1094/MPMI-8-0584]8589413
1995Toledo García, Icela Ivonne, Rangel, P., Hansberg, W.. (1995). "Redox imbalance at the start of each morphogenetic step of Neurospora crassa conidiation". ARCHIVES OF BIOCHEMISTRY AND BIOPHYSICS. 319(2):519-524. [doi:10.1006/abbi.1995.1326]7786037
1995BARRIOS, H, Fischer, H.M., Hennecke, H., MORETT, E. (1995). "OVERLAPPING PROMOTERS FOR 2 DIFFERENT RNA-POLYMERASE HOLOENZYMES CONTROL Bradyrhizobium-japonicum nifA EXPRESSION". Journal Of Bacteriology. 177(7):1760-1765. [doi:10.1128/jb.177.7.1760-1765.1995]7896698
1994GRAHAM, PH, DRAEGER, KJ, FERREY, ML, CONROY, MJ, HAMMER, BE, MARTINEZ, E, AARONS, SR, QUINTO, C. (1994). "Acid pH tolerance in strains of Rhizobium and Bradyrhizobium, and initial studies on the basis for acid tolerance of Rhizobium trpici UMR1899". Canadian Journal Of Microbiology. 40(3):198-207. [doi:10.1139/m94-033]
1994Garduño- Juárez, R., Romero, D.. (1994). "Heuristic methods in conformational space search of peptides". THEOCHEM-J MOL STRUC. 308(C):115-123. [doi:10.1016/0166-1280(94)80097-9]
1994PARDO, MA, LAGUNEZ, J, MIRANDA, J, MARTINEZ, E. (1994). "NODULATING ABILITY OF Rhizobium-tropici IS CONDITIONED BY A PLASMID-ENCODED CITRATE SYNTHASE". Molecular Microbiology. 11(2):315-321. [doi:10.1111/j.1365-2958.1994.tb00311.x]8170393
1994MARTINEZROMERO, E. (1994). "Recent developments in Rhizobium taxonomy". PLANT AND SOIL. 161(1):11-20. [doi:10.1007/BF02183081]
1994ROMANOV, VI, MARTINEZROMERO, E. (1994). "Sucrose transport and hydrolysis in Rhizobium tropici". PLANT AND SOIL. 161(1):91-96. [doi:10.1007/BF02183088]
1994TOLEDO, I, AGUIRRE, J, HANSBERG, W. (1994). "Enzyme inactivation related to a hyperoxidant state during conidiation of Neurospora crassa". MICROBIOLOGY-SGM. 140(9):2391-2397. [doi:10.1099/13500872-140-9-2391]7952190
1994CABALLEROMELLADO, J, MARTINEZROMERO, E. (1994). "LIMITED GENETIC DIVERSITY IN THE ENDOPHYTIC SUGARCANE BACTERIUM Acetobacter-diazotrophicus". Applied And Environmental Microbiology. 60(5):1532-1537. [doi:10.1128/AEM.60.5.1532-1537.1994]16349254
1994Spaink, H.P., Bloemberg, G.V., Wijfjes, A.H.M., Ritsema, T., López Lara, Isabel María, Geiger, Otto, Harteveld, M., Kafetzopoulos, D., van Brussel, A.N.N., Kijne, J.W., Lugtenberg, B.J.J., van der Drift, K.M.G.M., Thomas-Oates, J.E., Potrykus, I., Sautter, C.. (1994). "The molecular basis of host specificity in the Rhizobium leguminosarum-plant interaction". Advances in Molecular Genetics of Plant-Microbe Interactions. Vol. 3 Proceedings of the 7th International Symposium on Molecular Plant-Microbe Interactions, Edinburgh, U.K., June 1994. 3():91-98. [doi:10.1007/978-94-011-0177-6]
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