Pablo Vinuesa Fleischmann

Genome Engineering Researcher

Associate Professor

Academic history

I’m a microbiologist interested in host-microbe interactions and microbial ecology, with a strong focus on comparative and evolutionary genomics. In general terms, research in my group aims to learn how niche specialization, including host adaptation, drives speciation in selected alpha- and gamma-Proteobacteria. I develop open-source software tools for microbial pan-genomics and phylogenomics, which are freely available at https://github.com/vinuesa. I’m also actively involved in teaching phylogenomics @LCG and diverse posgraduate programs @UNAM and abroad.

For more details please visit:
personal website: http://www.ccg.unam.mx/~vinuesa/
Google Scholar: http://bit.ly/2FUgqnR
ORCID: http://orcid.org/0000-0001-6119-2956
GitHub: https://github.com/vinuesa
twitter: @pvinmex

Current research
Our current work focuses on elucidating the roles and contributions of mobile genetic elements, efflux pumps, resistance genes, secretion systems and the exoproteins they secrete in the emergence of opportunistic pathogenic strains of diverse alpha- (Rhizobiales) and gamma-Proteobacteria (particularly Salmonella and Stenotrophomonas).

We use comparative and functional genomics approaches to elucidate the evolutionary processes and molecular mechanisms underlying the origin of these opportunistic pathogens and their adaptation to anthropogenized habitats. We develop open-source software for these tasks, mainly GET_HOMOLOGUES and GET_PHYLOMARKERS, which are freely available at https://github.com/vinuesa.

Current funding
Research in Vinuesa’s lab is currently (2018) funded by CONACyT and PAPIIT grants.
The Salmonella work is performed in the frame of a large CONACyT – Fronteras de la Ciencia grant (FC-2105-2-879) entitled “Descubriendo el impacto del genoma accesorio en la evolución de cepas atípicas de Salmonella Typhimurium causantes de infecciones sistémicas en México”, together with Drs. Edmundo Calva, José Luis Puente and Claudia Silva from the Institute of Biotechnology (IBT-UNAM).
The Stenotrophomonas work is funded by DGAPA-PAIIT/UNAM grant (IN206318) entitled: “Predicción genómica y análisis funcional de determinantes de resistencia y virulencia en Stenotrophomonas maltophilia, un patógeno oportunista emergente”.

Group and Publications
Please visit http://www.ccg.unam.mx/~vinuesa/group.html to meet our group members and http://www.ccg.unam.mx/~vinuesa/publications.html for an updated list of publications.

Current group members
Claudia Torres (posdoctoral researcher with a DGAPA-UNAM fellowship, September 2018-1 ->)
Claudia works on “comparative and functional genomics of Type II Secretion Systems in Stenotrophomonas
Daniel Cazares (PhD student; PDCB-UNAM, August 2016-1 ->).
Daniel works on: “Isolation and genomic characterization of polyvalent phages from environmental matrices and Proteobacterial isolates”.
Perla Tinoco Carrillo (PhD student; PDCB-UNAM, February 2014-1 ->).
She works on: “Diversity and resistance profiles of multidrug-resistant Proteobacteria inhabiting soils of Morelos, Mexico”.
Luz Edith Ochoa Sánchez (PhD student; PDCB-UNAM, August 2013-1 ->). She works on: “Phylogenetic and phenotypic characterization of multidrug-resistant Proteobacteria recovered from Mexican rivers with contrasting contamination levels.”

More details at http://www.ccg.unam.mx/~vinuesa/group.html

Links

OrcID
Scopus

Telephone: (777) 3175867
Email: vinuesa@ccg.unam.mx

Publications

YearPublicationPMID
2021Cazares D, Cazares A, Figueroa W, Guarneros G, Edwards RA, Vinuesa P. (2021). "A Novel Group of Promiscuous Podophages Infecting Diverse Gammaproteobacteria from River Communities Exhibits Dynamic Intergenus Host Adaptation.". mSystems. 6(1):-. [doi:10.1128/mSystems.00773-20]33531404
2020Pereira-Santana, A., Gamboa-Tuz, S.D., Zhao, T., Eric Schranz, M., Vinuesa, P., Bayona, A., Rodríguez-Zapata, L.C., Castano, E.. (2020). "Fibrillarin evolution through the Tree of Life: Comparative genomics and microsynteny network analyses provide new insights into the evolutionary history of Fibrillarin.". Plos Computational Biology. 16(10):e1008318-. [doi:10.1371/journal.pcbi.1008318]33075080
2020Carballo-Ontiveros, M.A., Cazares, A., Vinuesa, P., Kameyama, L., Guarneros, G.. (2020). "The Concerted Action of Two B3-Like Prophage Genes Excludes Superinfecting Bacteriophages by Blocking DNA Entry into pseudomonas Aeruginosa". JOURNAL OF VIROLOGY. 94(15):e00953-20-. [doi:10.1128/JVI.00953-20]32461312
2020Giner-Lamia J, Vinuesa P, Betancor L, Silva C, Bisio J, Soleto L, Chabalgoity JA, Puente JL, Salmonella CYTED Network, García-Del Portillo F. (2020). "Correction to: Genome analysis of Salmonella enterica subsp. diarizonae isolates from invasive human infections reveals enrichment of virulence-related functions in lineage ST1256.". Bmc Genomics. 21(1):373-373. [doi:10.1186/s12864-020-06781-x]32456693
2020Guzmán-Trampe, S.M., Ikeda, H., Vinuesa, P., Macías-Rubalcava, M.L., Esquivel, B., Centeno-Leija, S., Tapia-Cabrera, S.M., Mora-Herrera, S.I., Ruiz-Villafán, B., Rodríguez-Sanoja, R., Sanchez, S.. (2020). "Production of distinct labdane-type diterpenoids using a novel cryptic labdane-like cluster from Streptomyces thermocarboxydus K155.". Applied Microbiology And Biotechnology. 104(2):741-750. [doi:10.1007/s00253-019-10240-3]31807886
2019Silva C, Calva E, Fernández-Mora M, Puente JL, Vinuesa P. (2019). "Population analysis of D6-like plasmid prophage variants associated with specific IncC plasmid types in the emerging Salmonella Typhimurium ST213 genotype.". Plos One. 14(10):e0223975-. [doi:10.1371/journal.pone.0223975]31626639
2019de Lajudie, Philippe M., Andrews, Mitchell, Ardley, Julie, Eardly, Bertrand, Jumas-Bilak, Estelle, Kuzmanovic, Nemanja, Lassalle, Rorent, Lindstrom, Kristina, Mhamdi, Ridha, Martinez-Romero, Esperanza, Moulin, Lionel, Mousavi, Seyed Abdollah, Nesme, Xavier, Peix, Alvaro, Pulawska, Joanna, Steenkamp, Emma, Stepkowski, Tomasz, Tian, Chang-Fu, Vinuesa, Pablo, Wei, Gehong, Willems, Anne, Zili, Jerri, Young, Peter. (2019). "Minimal standards for the description of new genera and species of Rhizobia and agrobacteria". International Journal Of Systematic And Evolutionary Microbiology. 69(7):1852-1863. [doi:10.1099/ijsem.0.003426]31140963
2019Gonzalez, Victor, Isela Santamaria, Rosa, Bustos, Patricia, Maria Perez-Carrascal, Olga, Vinuesa, Pablo, Juarez, Soledad, Martinez-Flores, Irma, Angel Cevallos, Miguel, Brom, Susana, Martinez-Romero, Esperanza, Romero, David. (2019). "Phylogenomic Rhizobium Species Are Structured by a Continuum of Diversity and Genomic Clusters". Frontiers in Microbiology. 10():910-. [doi:10.3389/fmicb.2019.00910]31114559
2019Vicens, A., Vinuesa, P., Arenas, M., Treviño, C.L.. (2019). "Analyzing the functional divergence of Slo1 and Slo3 channel subfamilies". Molecular Phylogenetics And Evolution. 133():33-41. [doi:10.1016/j.ympev.2018.12.026]30586650
2019Giner-Lamia, J., Vinuesa, P., Betancor, L., Silva, C., Bisio, J., Soleto, L., Chabalgoity, J.A., Puente, J.L., Soncini, F.C., García-Vescovi, E., Flores, G., Pedraza, J., Yim, L., García, C., Astocondor, L., Ochoa, T., Hinostroza, N., Graciela Pucciarelli, M., Hernández-Alvarez, A., Del Moral, V., García-Del Portillo, F.. (2019). "Genome analysis of Salmonella enterica subsp. diarizonae isolates from invasive human infections reveals enrichment of virulence-related functions in lineage ST1256". Bmc Genomics. 20(1):99-99. [doi:10.1186/s12864-018-5352-z]30704413
2019Edwards, R.A., Vega, A.A., Norman, H.M., Ohaeri, M., Levi, K., Dinsdale, E.A., Cinek, O., Aziz, R.K., McNair, K., Barr, J.J., Bibby, K., Brouns, S.J.J., Cazares, A., de Jonge, P.A., Desnues, C., Díaz Muñoz, S.L., Fineran, P.C., Kurilshikov, A., Lavigne, R., Mazankova, K., McCarthy, D.T., Nobrega, F.L., Reyes Muñoz, A., Tapia, G., Trefault, N., Tyakht, A.V., Vinuesa, P., Wagemans, J., Zhernakova, A., Aarestrup, F.M., Ahmadov, G., Alassaf, A., Anton, J., Asangba, A., Billings, E.K., Cantu, V.A., Carlton, J.M., Cazares, D., Cho, G.S., Condeff, T., Cortés, P., Cranfield, M., Cuevas, D.A., De la Iglesia, R., Decewicz, P., Doane, M.P., Dominy, N.J., Dziewit, L., Elwasila, B.M., Eren, A.M., Franz, C., Fu, J., Garcia-Aljaro, C., Ghedin, E., Gulino, K.M., Haggerty, J.M., Head, S.R., Hendriksen, R.S., Hill, C., Hyöty, H., Ilina, E.N., Irwin, M.T., Jeffries, T.C., Jofre, J., Junge, R.E., Kelley, S.T., Khan Mirzaei, M., Kowalewski, M., Kumaresan, D., Leigh, S.R., Lipson, D., Lisitsyna, E.S., Llagostera, M., Maritz, J.M., Marr, L.C., McCann, A., Molshanski-Mor, S., Monteiro, S., Moreira-Grez, B., Morris, M., Mugisha, L., Muniesa, M., Neve, H., Nguyen, N.p., Nigro, O.D., Nilsson, A.S., O’Connell, T., Odeh, R., Oliver, A., Piuri, M., Prussin, A.J., Qimron, U., Quan, Z.X., Rainetova, P., Ramírez-Rojas, A., Raya, R., Reasor, K., Rice, G.A.O., Rossi, A., Santos, R.. (2019). "Global phylogeography and ancient evolution of the widespread human gut virus crAssphage.". Nature microbiology. 4(10):1727-1736. [doi:10.1038/s41564-019-0494-6]31285584
2018Sandner-Miranda, Luisa, Vinuesa, Pablo, Cravioto, Alejandro, Morales-Espinosa, Rosario. (2018). "The genomic basis of intrinsic and acquired antibiotic resistance in the genus Serratia". Frontiers in Microbiology. 9(MAY):828-828. [doi:10.3389/fmicb.2018.00828]29867787
2018Vinuesa, P., Ochoa-Sánchez, L.E., Contreras-Moreira, B.. (2018). "GET_PHYLOMARKERS, a software package to select optimal orthologous clusters for phylogenomics and inferring pan-genome phylogenies, used for a critical geno-taxonomic revision of the genus Stenotrophomonas". Frontiers in Microbiology. 9(MAY):771-771. [doi:10.3389/fmicb.2018.00771]29765358
2017Bustos, P., Santamaría, R.I., Pérez-Carrascal, O.M., Acosta, J.L., Lozano, L., Juárez, S., Martínez-Flores, I., Martínez-Romero, E., Cevallos, M.Á., Romero, D., Dávila, G., Vinuesa, P., Miranda, F., Ormeño, E., González, V.. (2017). "Complete Genome Sequences of Three Rhizobium gallicum Symbionts Associated with Common Bean ( Phaseolus vulgaris ).". Genome Announcements. 5(11):-. [doi:10.1128/genomeA.00030-17]28302777
2017Santamaría, R.I., Bustos, P., Pérez-Carrascal, O.M., Miranda-Sánchez, F., Vinuesa, P., Martínez-Flores, I., Juárez, S., Lozano, L., Martínez-Romero, E., Cevallos, M.Á., Romero, D., Dávila, G., Ormeño-Orrillo, E., González, V.. (2017). "Complete Genome Sequences of Eight Rhizobium Symbionts Associated with Common Bean ( Phaseolus vulgaris ).". Genome Announcements. 5(30):-. [doi:10.1128/genomeA.00645-17]28751391
2017Martínez-Flores, W.A., Palma-García, J.M., Caballero-Ortega, H., Del Viento-Camacho, A., López-Escamilla, E., Martínez-Hernández, F., Vinuesa, P., Correa, D., Maravilla, P.. (2017). "Genotyping Toxoplasma Gondii with the B1 Gene in Naturally Infected Sheep from an Endemic Region in the Pacific Coast of Mexico". VECTOR-BORNE AND ZOONOTIC DISEASES. 17(7):495-502. [doi:10.1089/vbz.2016.2085]28530509
2017Cubillas, C., Miranda-Sánchez, F., González-Sánchez, A., Elizalde, J.P., Vinuesa, P., Brom, S., García-de los Santos, A.. (2017). "A comprehensive phylogenetic analysis of copper transporting P1BATPases from bacteria of the Rhizobiales order uncovers multiplicity, diversity and novel taxonomic subtypes". MICROBIOLOGYOPEN. 6(4):e00452-. [doi:10.1002/mbo3.452]28217917
2016Miranda-Sanchez, Fabiola, Rivera, Javier, Vinuesa, Pablo. (2016). "Diversity patterns of Rhizobiaceae communities inhabiting soils, root surfaces and nodules reveal a strong selection of rhizobial partners by legumes". Environmental Microbiology. 18(8):2375-2391. [doi:10.1111/1462-2920.13061]26395550
2016Perez Carrascal, Olga M., VanInsberghe, David, Juarez, Soledad, Polz, Martin F., Vinuesa, Pablo, Gonzalez, Victor. (2016). "Population genomics of the symbiotic plasmids of sympatric nitrogen-fixing Rhizobium species associated with Phaseolus vulgaris". Environmental Microbiology. 18(8):2660-2676. [doi:10.1111/1462-2920.13415]27312778
2016Silva, C., Calva, E., Puente, J.L., Zaidi, M.B., Vinuesa, P.. (2016). "Complete genome sequence of Salmonella enterica serovar Typhimurium strain SO2 (sequence type 302) isolated from an asymptomatic child in Mexico". Microbiology Resource Announcements. 4(2):e00253-16-. [doi:10.1128/genomeA.00253-16]27081133
2016Vinuesa, P., Puente, J.L., Calva, E., Zaidi, M.B., Silva, C.. (2016). "Complete genome sequence of Salmonella enterica serovar Typhimurium strain SO3 (sequence type 302) isolated from a baby with meningitis in Mexico". Microbiology Resource Announcements. 4(2):e00285-16-. [doi:10.1128/genomeA.00285-16]27103717
2016Silva, C., Calva, E., Puente, J.L., Zaidi, M.B., Vinuesa, P.. (2016). "Complete genome sequence of Salmonella enterica serovar Typhimurium strain YU15 (sequence type 19) harboring the Salmonella genomic island 1 and virulence plasmid pSTV". Microbiology Resource Announcements. 4(2):e00252-16-. [doi:10.1128/genomeA.00252-16]27081132
2016Sandner-Miranda, L., Vinuesa, P., Sober�n-Ch�vez, G., Morales-Espinosa, R.. (2016). "Complete genome sequence of Serratia marcescens SmUNAM836, a nonpigmented multidrug-resistant strain isolated from a Mexican patient with obstructive pulmonary disease". Microbiology Resource Announcements. 4(1):e01417-15-. [doi:10.1128/genomeA.01417-15]26798087
2016Centeno-Leija, S., Vinuesa, P., Karol Rodr�guez-Pe�a,, Trenado-Uribe, M., Yair C�rdenas-Conejo,, Serrano-Posada, H., Romina Rodr�guez-Sanoja,, S�ncheza, S.. (2016). "Draft genome Sequence of an endophytic actinoplanes species, encoding uncommon trans-Acyltransferase polyketide synthases". Microbiology Resource Announcements. 4(2):e00164-16-. [doi:10.1128/genomeA.00164-16]27013046
2015Riquelme, Cristina, Camara, Sandra, Enes Dapkevicius, Maria de Lurdes N., Vinuesa, Pablo, Gomes da Silva, Celia Costa, Xavier Malcata, F., Rego, Oldemiro A.. (2015). "Characterization of the bacterial biodiversity in Pico cheese (an artisanal Azorean food)". International Journal Of Food Microbiology. 192():86-94. [doi:10.1016/j.ijfoodmicro.2014.09.031]25440551
2015Vinuesa, P., Contreras-Moreira, B.. (2015). "Pangenomic Analysis of the Rhizobiales Using the GET_HOMOLOGUES Software Package". Biological Nitrogen Fixation. 1-2():271-280. [doi:10.1002/9781119053095.ch27]
2015Vinuesa, P., Ochoa-S�nchez, L.E.. (2015). "Complete genome sequencing of Stenotrophomonas acidaminiphila ZAC14D2_NAIMI4_2, a multidrug-resistant strain isolated from sediments of a polluted river in Mexico, uncovers new antibiotic resistance genes and a novel class-II lasso peptide biosynthesis gene cluster". Microbiology Resource Announcements. 3(6):e0143315-. [doi:10.1128/genomeA.01433-15]26659678
2015Pablo Vinuesa, Contreras-Moreira, Bruno. (2015). "Robust Identification of Orthologues and Paralogues for Microbial Pan-Genomics Using GET_HOMOLOGUES: A Case Study of pIncA/C plasmids". Bacterial Pangenomics: Methods And Protocols. 1231():203-232. [doi:10.1007/978-1-4939-1720-4_14]
2014Cubillas, Ciro, Vinuesa, Pablo, Tabche, Maria Luisa, Davalos, Araceli, Vazquez, Alejandra, Hernandez-Lucas, Ismael, Romero, David, Garcia-de los Santos, Alejandro. (2014). "The cation diffusion facilitator protein EmfA of Rhizobium etli belongs to a novel subfamily of Mn<sup>2+</sup>/Fe<sup>2+</sup> transporters conserved in a-proteobacteria". Metallomics. 6(10):1808-1815. [doi:10.1039/c4mt00135d]25054342
2014Chang, F.M.J., Coyne, H.J., Cubillas Ramírez, Ciro Alberto, Vinuesa Fleischmann, Pablo, Fang, X.Y., Ma, Z., Ma, D.J., Helmann, J.D., García de los Santos, Alejandro, Wang, Y.X., Dann, C.E., Giedroc, D.P.. (2014). "Cu(I)-mediated allosteric switching in a copper-sensing operon repressor (CsoR)". JOURNAL OF BIOLOGICAL CHEMISTRY. 289(27):19204-19217. [doi:10.1074/jbc.M114.556704]24831014
2013Estrada De Los Santos, Paulina, Vinuesa Fleischmann, Pablo, Martínez Aguilar, Lourdes, Hirsch, A.M., Caballero Mellado, José de Jesús. (2013). "Phylogenetic analysis of Burkholderia species by multilocus Sequence Analysis". Current Microbiology. 67(1):51-60. [doi:10.1007/s00284-013-0330-9]23404651
2013Contreras-Moreira, B., Vinuesa Fleischmann, Pablo. (2013). "GET_HOMOLOGUES, a versatile software package for scalable and robust microbial pangenome analysis". Applied And Environmental Microbiology. 79(24):7696-7701. [doi:10.1128/AEM.02411-13]24096415
2013Cubillas Ramírez, Ciro Alberto, Vinuesa Fleischmann, Pablo, Tabche, M.L., García de los Santos, Alejandro. (2013). "Phylogenomic analysis of Cation Diffusion Facilitator proteins uncovers Ni2+/Co2+ transporters". Metallomics. 5(12):1634-1643. [doi:10.1039/c3mt00204g]24077251
2012Escalera-Zamudio, M., Cobian-Guemes, G., Soto-del Río, M.D., Isa, P., Sánchez-Betancourt, I., Parissi-Crivelli, A., Martinez-Cazares, M.T., Romero, P., Velázquez-Salinas, L., Huerta-Lozano, B., Nelson, M., Montero, H., Vinuesa Fleischmann, Pablo, López, S., Arias, C.F.. (2012). "Characterization of an influenza A virus in Mexican swine that is related to the A/H1N1/2009 pandemic clade". Virology. 433(1):176-182. [doi:10.1016/j.virol.2012.08.003]22921315
2012Castillo-Rodal, A.I., Mazari-Hiriart, M., Lloret-Sánchez, L.T., Sachman Ruiz, Bernardo, Vinuesa Fleischmann, Pablo, López-Vidal, Y. (2012). "Potentially pathogenic nontuberculous mycobacteria found in aquatic systems. Analysis from a reclaimed water and water distribution system in Mexico City". European Journal Of Clinical Microbiology and Infectious Diseases. 31(5):683-694. [doi:10.1007/s10096-011-1359-y]21805195
2011Acosta, Jose L., Eguiarte, L.E., Santamaria Gutiérrez, Rosa Isela, Bustos Arcos, Virginia Patricia, Vinuesa P, Martínez Romero, María Esperanza, Dávila Ramos, José Guillermo, González Zúñiga, Víctor Manuel. (2011). "Genomic lineages of Rhizobium etli revealed by the extent of nucleotide polymorphisms and low recombination". Bmc Evolutionary Biology. 11(1):305-305. [doi:10.1186/1471-2148-11-305]22004448
2011Cervantes de la Luz, Laura, Bustos Arcos, Virginia Patricia, Girard Cuesy, María de Lourdes, Santamaria Gutiérrez, Rosa Isela, Dávila Ramos, José Guillermo, Vinuesa Fleischmann, Pablo, Romero Camarena, David René, Brom Klanner, Susana. (2011). "The conjugative plasmid of a bean-nodulating Sinorhizobium fredii strain is assembled from sequences of two Rhizobium plasmids and the chromosome of a Sinorhizobium strain". Bmc Microbiology. 11(1):1-11. [doi:10.1186/1471-2180-11-149]21702991
2011Sachman-Ruiz, B., Contreras-Moreira, B., Zozaya, E., Martínez-Garza, C., Vinuesa, P.. (2011). "Primers4clades: A Web Server to Design Lineage-Specific PCR Primers for Gene-Targeted Metagenomics". Handbook of Molecular Microbial Ecology I: Metagenomics and Complementary Approaches. 1():441-452. [doi:10.1002/9781118010518.ch51]
2011Silva-Sanchez, J., Garza-Ramos, J.U., Reyna-Flores, F., Sánchez-Pérez, A, Rojas-Moreno, T., Andrade-Almaraz, V., Pastrana, J., Castro-Romero, J.I., Vinuesa Fleischmann, Pablo, Barrios, H., Cervantesde, C. (2011). "Extended-spectrum ß-Lactamase-Producing Enterobacteriaceae Causing Nosocomial Infections in Mexico. A Retrospective and Multicenter Study". Archives Of Medical Research. 42(2):156-162. [doi:10.1016/j.arcmed.2011.02.004]21565630
2010Vinuesa, Pablo. (2010). "multilocus Sequence Analysis and Bacterial Species Phylogeny Estimation". Molecular Phylogeny of Microorganisms. ():41-64.
2009Cummings, Stephen P., Gyaneshwar, Prasad, Vinuesa, Pablo, Farruggia, Frank T., Andrews, Mitchell, Humphry, David, Elliott, Geoffrey N., Nelson, Andrew, Orr, Caroline, Pettitt, Deborah, Shah, Gopit R., Santos, Scott R., Krishnan, Hari B., Odee, David, Moreira, Fatima M. S., Sprent, Janet I., Young, J. Peter W., James, Euan K.. (2009). "Nodulation of Sesbania species by Rhizobium (Agrobacterium) strain IRBG74 and other Rhizobia". Environmental Microbiology. 11(10):2510-2525. [doi:10.1111/j.1462-2920.2009.01975.x]19555380
2009Contreras-Moreira, Bruno, Sachman-Ruiz, Bernardo, Figueroa-Palacios, Irais, Vinuesa, Pablo. (2009). "primers4clades: A web server that uses phylogenetic trees to design lineage-specific PCR primers for metagenomic and diversity studies". Nucleic Acids Research. 37(SUPPL. 2):95-100. [doi:10.1093/nar/gkp377]19465390
2008Renteria, Miguel E., Gandhi, Neha S., Vinuesa, Pablo, Helmerhorst, Erik, Mancera, Ricardo L.. (2008). "A comparative structural bioinformatics analysis of the insulin receptor family ectodomain based on phylogenetic information". Plos One. 3(11):e3667-. [doi:10.1371/journal.pone.0003667]18989367
2008Vinuesa, Pablo, Rojas-Jimenez, Keilor, Contreras-Moreira, Bruno, Mahna, Suresh K., Prasad, Braj Nandan, Moe, Hla, Selvaraju, Suresh Babu, Thierfelder, Heidemarie, Werner, Dietrich. (2008). "multilocus Sequence Analysis for assessment of the biogeography and evolutionary genetics of four Bradyrhizobium species that nodulate soybeans on the asiatic continent". Applied And Environmental Microbiology. 74(22):6987-6996. [doi:10.1128/AEM.00875-08]18791003
2008Cerritos, Rene, Vinuesa, Pablo, Eguiarte, Luis E., Herrera-Estrella, Luis, Alcaraz-Peraza, Luis D., Arvizu-Gomez, Jackeline L., Olmedo, Gabriela, Ramirez, Enrique, Siefert, Janet L., Souza, Valeria. (2008). "Bacillus coahuilensis sp. nov., a moderately halophilic species from a desiccation lagoon in the Cuatro Ciénegas Valley in Coahuila, Mexico". International Journal Of Systematic And Evolutionary Microbiology. 58(4):919-923. [doi:10.1099/ijs.0.64959-0]18398195
2007Silva Romero, Claudia Verónica, Vinuesa Fleischmann, Pablo. (2007). "Ecología evolutiva de bacterias y el concepto de especie: el caso de los rizobios". Ecología Molecular. ():351-392.
2007Poggio, Sebastian, Abreu-Goodger, Cei, Fabela, Salvador, Osorio, Aurora, Dreyfus, Georges, Vinuesa, Pablo, Camarena, Laura. (2007). "A complete set of flagellar genes acquired by horizontal transfer coexists with the endogenous flagellar system in Rhodobacter sphaeroides". Journal Of Bacteriology. 189(8):3208-3216. [doi:10.1128/JB.01681-06]17293429
2007Sohlenkamp, Christian, Galindo-Lagunas, Kanaan A., Guan, Ziqiang, Vinuesa, Pablo, Robinson, Sally, Thomas-Oates, Jane, Raetz, Christian R. H., Geiger, Otto. (2007). "The lipid lysyl-phosphatidylglycerol is present in membranes of Rhizobium tropici CIAT899 and confers increased resistance to polymyxin B under acidic growth conditions". Molecular Plant-Microbe Interactions. 20(11):1421-1430. [doi:10.1094/MPMI-20-11-1421]17977153
2006Albino, U., Saridakis, D. P., Ferreira, M. C., Hungria, M., Vinuesa, P., Andrade, G.. (2006). "High diversity of diazotrophic bacteria associated with the carnivorous plant Drosera villosa var. villosa growing in oligotrophic habitats in Brazil". PLANT AND SOIL. 287(1-2):199-207. [doi:10.1007/s11104-006-9066-7]
2006Ormeño Orrillo, Ernesto Aldo, Vinuesa Fleischmann, Pablo, Zuniga-Davila, D.Z., Martínez Romero, María Esperanza. (2006). "Molecular diversity of native bradyrhizobia isolated from Lima bean (Phaseolus lunatus L.) in Peru". Systematic And Applied Microbiology. 29(3):253-262. [doi:10.1016/j.syapm.2005.09.002]16564961
2006Silva Romero, Claudia Verónica, Vinuesa Fleischmann, Pablo, Martínez Romero, María Esperanza. (2006). "Species delineation and biogeography of Rhizobia: Two case studies". Proceedings of the 12th International Congress on Molecular Plant-Microbe Interactions. 5():319-324.
2005Rojas-Jimenez, K., Sohlenkamp, Christian, Geiger, Otto, Martínez Romero, María Esperanza, Werner, D., Vinuesa Fleischmann, Pablo. (2005). "A CIC chloride channel homolog and ornithine-containing membrane lipids of Rhizobium tropici CIAT899 are involved in symbiotic efficiency and acid tolerance". Molecular Plant-Microbe Interactions. 18(11):1175-1185. [doi:10.1094/MPMI-18-1175]16353552
2005Silva Romero, Claudia Verónica, Vinuesa Fleischmann, Pablo, Eguiarte, L.E., Souza, V., Martínez Romero, María Esperanza. (2005). "Evolutionary genetics and biogeographic structure of Rhizobium gallicum sensu lato, a widely distributed bacterial symbiont of diverse legumes". MOLECULAR ECOLOGY. 14(13):4033-4050. [doi:10.1111/j.1365-294X.2005.02721.x]16262857
2005Vinuesa Fleischmann, Pablo, Silva Romero, Claudia Verónica, Lorite, M.J., Izaguirre-Mayoral, M.L., Bedmar, E.J., Martínez Romero, María Esperanza. (2005). "Molecular systematics of Rhizobia based on maximum likelihood and Bayesian phylogenies inferred from rrs, atpD, recA and nifH sequences, and their use in the classification of Sesbania microsymbionts from Venezuelan wetlands". Systematic And Applied Microbiology. 28(8):702-716. [doi:10.1016/j.syapm.2005.05.007]16261860
2005Vinuesa Fleischmann, Pablo, Leon-Barrios, M., Silva Romero, Claudia Verónica, Willems, A., Jarabo-Lorenzo, A., Perez-Galdona, R., Werner, D., Martínez Romero, María Esperanza. (2005). "Bradyrhizobium canariense sp. nov., an acid-tolerant endosymbiont that nodulates endemic genistoid legumes (Papilionoideae: Genisteae) from the Canary Islands, along with Bradyrhizobium japonicum bv. genistearum, Bradyrhizobium genospecies alpha and Bradyrhizobium genospecies beta". International Journal Of Systematic And Evolutionary Microbiology. 55(2):569-575. [doi:10.1099/ijs.0.63292-0]15774626
2005Shamseldin, AAY, Vinuesa, P, Thierfelder, H, Werner, D. (2005). "Rhizobium etli and Rhizobium gallicum nodulate Phaseolus vulgaris in Egyptian soils and display cultivar-dependent symbiotic efficiency". Symbiosis. 38(2):145-161.
2005Vinuesa Fleischmann, Pablo, Silva Romero, Claudia Verónica, Werner, D., Martínez Romero, María Esperanza. (2005). "Population genetics and phylogenetic inference in bacterial molecular systematics: The roles of migration and recombination in Bradyrhizobium species cohesion and delineation". Molecular Phylogenetics And Evolution. 34(1):29-54. [doi:10.1016/j.ympev.2004.08.020]15579380
2004Medrano Soto, Luis Arturo, Moreno Hagelsieb, Gabriel, Vinuesa Fleischmann, Pablo, Christen, J.A., Collado Vides, Pedro Julio. (2004). "Successful lateral transfer requires codon usage compatibility between foreign genes and recipient genomes". MOLECULAR BIOLOGY AND EVOLUTION. 21(10):1884-1894. [doi:10.1093/molbev/msh202]15240837
2004Vinuesa, P, Silva, C. (2004). "Species delineation and biogeography of symbiotic bacteria associated with cultivated and wild legumes". Biological Resources And Migration. ():143-155.
2003Vinuesa Fleischmann, Pablo, Neumann-Silkow, F., Pacios-Bras, C., Spaink, H.P., Martínez Romero, María Esperanza, Werner, D.. (2003). "Genetic analysis of a pH-regulated operon from Rhizobium tropici CIAT899 involved in acid tolerance and nodulation competitiveness". Molecular Plant-Microbe Interactions. 16(2):159-168. [doi:10.1094/MPMI.2003.16.2.159]12575750
2003Silva, C, Vinuesa, P, Eguiarte, LE, Martinez-Romero, E, Souza, V. (2003). "Rhizobium etli and Rhizobium gallicum nodulate common bean (Phaseolus vulgaris) in a traditionally managed milpa plot in Mexico: Population genetics and biogeographic implications". Applied And Environmental Microbiology. 69(2):884-893. [doi:10.1128/AEM.69.2.884-893.2003]12571008
2000Jarabo-Lorenzo, A, Velazquez, E, Perez-Galdona, R, Vega-Hernandez, MC, Martinez-Molina, E, Mateos, PF, Vinuesa, P, Martinez-Romero, E, Leon-Barrios, M. (2000). "Restriction fragment length polymorphism analysis of 16S rDNA and low molecular weight RNA profiling of rhizobial isolates from shrubby legumes endemic to the Canary islands". Systematic And Applied Microbiology. 23(3):418-425. [doi:10.1016/S0723-2020(00)80073-9]11108022