Functional Genomics of Prokaryotes

Dr. Michael Dunn´s group. Carbon and nitrogen metabolism of Rhizobia, specially the biochemical characterization of anaplerotic enzymes from the tricarboxylic acids cycle, such as Pyruvate carboxylase, Pyruvate dehydrogenase and Phosphoenolpyruvate carboxylase.

Dr. Sergio Encarnación´s group. This group was pioneer in the field of proteomics in Mexico and Latin America. This tool has been used to characterize the metabolism of several strains of Rhizobia, in free living and in symbiosis with legumes; as also in the formation of biofilms and in stress.

Dr. Jaime Mora´s group. The carbon and nitrogen metabolism of Rhizobia, the physiological characterization of growth and the requirement of the vitamins biotin and thiamine, the sensing of metabolites (extra or intracellular) by the receptor tar and its influence on growth. Also, study of genomics and evolution.

Group Staff

Jaime Mora CelisResearcherEmeritus 3291687
Sergio Manuel Encarnación GuevaraResearcherFull 3291899
Michael Frederick Dunn ResearcherAssociate 120 4773
Omar Alejandro Aguilar VeraLaboratory TechnicianLaboratory 3139944
Sandra Contreras MartínezLaboratory TechnicianLaboratory 3114662
Rafael Díaz MendezLaboratory TechnicianLaboratory 3139944
Magdalena Hernández OrtizLaboratory TechnicianLaboratory 3139944
Humberto Peralta DíazLaboratory TechnicianLaboratory 3290865
María del Carmen Vargas LagunasLaboratory TechnicianLaboratory 3139944
Hermenegildo Taboada CastroLaboratory TechnicianLaboratory 376 0882
Oliver Castillo QuevedoSupport 3291687
Ángel Gabriel Martínez BatallarSupport 3139944
Alma Ruth Reyes GonzálezLaboratory TechnicianLaboratory 3291687
Víctor Manuel Chávez JacoboPostdoctoral 3139944

Group Publications

2021López-Chávez, M, Alvarez-Legorreta, T, Infante-Mata, D, Dunn, M, Guillén-Navarro, K. (2021). "Glyphosate-remediation potential of selected plant species in artificial wetlands". SCIENCE OF THE TOTAL ENVIRONMENT. 781():146812-. [doi:10.1016/j.scitotenv.2021.146812]
2021Martínez-García, S, Peralta, H, Betanzos-Cabrera, G, Chavez-Galan, L, Rodríguez-Martínez, S, Cancino-Diaz, M, Cancino-Diaz, J. (2021). "Proteomic comparison of biofilm vs. planktonic Staphylococcus epidermidis cells suggests key metabolic differences between these conditions.". Research In Microbiology. 172(2):-. [doi:10.1016/j.resmic.2020.103796]33412274
2021Rizo, J, Guillén, D, Díaz-Ruiz, G, Wacher, C, Encarnación, S, Sánchez, S, Rodríguez-Sanoja, R. (2021). "Metaproteomic Insights Into the Microbial Community in Pozol.". Frontiers in Nutrition. 8():-. [doi:10.3389/fnut.2021.714814]34490328
2021Perez-Perez, L, Huerta-Ocampo, J, Ramos-Enríquez, J, Ruiz-Cruz, S, Wong-Corral, F, Rosas-Burgos, E, Hernández-Ortíz, M, Encarnación-Guevara, S, Robles-García, M, Iturralde-García, R, Borboa-Flores, J, Del-Toro-Sánchez, C. (2021). "Interaction of the human intestinal microbiota with the release of bound phenolic compounds in chickpea (Cicer arietinum L.)". INT J FOOD SCI TECH. ():-. [doi:10.1111/ijfs.15351]
2021Maza-Lopez, J, Contreras-Ochoa, C, Reyes-Guerrero, D, Encarnacion-Guevara, S, Hernandez-Ortiz, M, Olmedo-Juarez, A, Lopez-Arellano, M. (2021). "Analysis of the immunomodulatory activity of excreted and secreted products from Haemonchus placei transition infective larvae (xL3)". VET PARASITOL. 298():109512-. [doi:10.1016/j.vetpar.2021.109512]34271321
2021Medina-Aparicio, L, Rodriguez-Gutierrez, S, Rebollar-Flores, J, Martínez-Batallar, Á, Mendoza-Mejía, B, Aguirre-Partida, E, Vázquez, A, Encarnación, S, Calva, E, Hernández-Lucas, I. (2021). "The CRISPR-Cas System Is Involved in OmpR Genetic Regulation for Outer Membrane Protein Synthesis in Salmonella Typhi.". Frontiers in Microbiology. 12():-. [doi:10.3389/fmicb.2021.657404]33854491
2021Ortiz-Hernández, M, Gama-Martínez, Y, Fernández-López, M, Castrejón-Godínez, M, Encarnación, S, Tovar-Sánchez, E, Salazar, E, Rodríguez, A, Mussali-Galante, P. (2021). "Transcriptomic analysis of Burkholderia cenocepacia CEIB S5-2 during methyl parathion degradation.". ENVIRON SCI POLLUT R. 28(31):42414-42431. [doi:10.1007/s11356-021-13647-6]33813711
2021Garibay-Cerdenares, O, Sánchez-Meza, L, Encarnación-Guevara, S, Hernández-Ortíz, M, Martínez-Batallar, G, Torres-Rojas, F, Mendoza-Catalán, M, Moral-Hernández, O, Leyva-Vázquez, M, Illades-Aguiar, B. (2021). "Effect of HPV 16 E6 oncoprotein variants on the alterations of the proteome of C33A cells". CANCER GENOM PROTEOM. 18(3):273-283. [doi:10.21873/CGP.20258]33893080
2021Andrade-Domínguez, A, Trejo-Hernández, A, Vargas-Lagunas, C, Encarnación-Guevara, S. (2021). "Phenotypic plasticity and a new small molecule are involved in a fungal-bacterial interaction.". SCIENTIFIC REPORTS. 11(1):-. [doi:10.1038/s41598-021-98474-y]34584120
2020Rebollar-Flores, J, Medina-Aparicio, L, Osio-Becerro, V, Villarreal, J, Mayo, S, Mendoza, B, Rodríguez-Gutierrez, S, Olvera, L, Dávila, S, Encarnación, S, Martínez-Batallar, A, Calva, E, Hernández-Lucas, I. (2020). "The Salmonella enterica Serovar Typhi ltrR Gene Encodes Two Proteins Whose Transcriptional Expression Is Upregulated by Alkaline pH and Repressed at Their Promoters and Coding Regions by H-NS and Lrp". Journal Of Bacteriology. 202(13):e00783-19-. [doi:10.1128/JB.00783-19]32284321
2020Ide, A, Hernández, V, Medina-Aparicio, L, Carcamo-Noriega, E, Girard, L, Hernández-Lucas, I, Dunn, M. (2020). "Genetic regulation, biochemical properties and physiological importance of arginase from Sinorhizobium meliloti". MICROBIOLOGY-SGM. 166(5):484-497. [doi:10.1099/mic.0.000909]32216867
2020Becerra-Rivera, V, Arteaga, A, Leija, A, Hernández, G, Dunn, M. (2020). "Polyamines produced by Sinorhizobium meliloti Rm8530 contribute to symbiotically relevant phenotypes ex planta and to nodulation efficiency on alfalfa.". MICROBIOLOGY-SGM. 166(3):278-287. [doi:10.1099/mic.0.000886]31935179
2020Rizo, J, Rogel, M, Guillén, D, Wacher, C, Martinez-Romero, E, Encarnación, S, Sánchez, S, Rodríguez-Sanoja, R. (2020). "Nitrogen Fixation in Pozol, a Traditional Fermented Beverage.". Applied And Environmental Microbiology. 86(16):1-15. [doi:10.1128/AEM.00588-20]32503911
2020Gomez-Caudillo, L, Ortega-Lozano, A, Martinez-Batallar, A, Rosas-Vargas, H, Minauro-Sanmiguel, F, Encarnacion-Guevara, S. (2020). "Principal component analysis on LC-MS/MS and 2DE-MALDI-TOF in glioblastoma cell lines reveals that mitochondria act as organelle sensors of the metabolic state in glioblastoma.". ONCOLOGY REPORTS. 44(2):661-673. [doi:10.3892/or.2020.7625]32468038
2020Taboada-Castro, H, Castro-Mondragón, J, Aguilar-Vera, A, Hernández-Álvarez, A, van Helden, J, Encarnación-Guevara, S. (2020). "RhizoBindingSites, a Database of DNA-Binding Motifs in Nitrogen-Fixing Bacteria Inferred Using a Footprint Discovery Approach.". Frontiers in Microbiology. 11():567471-. [doi:10.3389/fmicb.2020.567471]33250866
2020Díaz-Zaragoza, M, Jiménez, L, Hernández, M, Hernández-Ávila, R, Navarro, L, Ochoa-Sánchez, A, Encarnación-Guevara, S, Ostoa-Saloma, P, Landa, A. (2020). "Protein expression profile of Taenia crassiceps cysticerci related to Th1- and Th2-type responses in the mouse cysticercosis model.". ACTA TROPICA. 212():105696-. [doi:10.1016/j.actatropica.2020.105696]32956635
2019García-Venzor, A, Mandujano-Tinoco, E, Lizarraga, F, Zampedri, C, Krötzsch, E, Salgado, R, Dávila-Borja, V, Encarnación-Guevara, S, Melendez-Zajgla, J, Maldonado, V. (2019). "Microenvironment-regulated lncRNA-HAL is able to promote stemness in breast cancer cells". BIOCHIMICA ET BIOPHYSICA ACTA-MOLECULAR CELL RESEARCH. 1866(12):118523-118523. [doi:10.1016/j.bbamcr.2019.118523]31401107
2019Silva Gaona, O, Guzman Flores, J, Vargas Ortiz, K, Hernandez Ortiz, M, Ramirez Emiliano, J, Encarnacion Guevara, S, Perez Vazquez, V. (2019). "Curcumin as a regulator of protein expression in the liver of obese diabetic db/db mice". FEBS OPEN BIO. 9():406-406.
2019Taboada, H, Meneses, N, Dunn, M, Vargas-Lagunas, C, Buchs, N, Castro-Mondragón, J, Heller, M, Encarnación, S. (2019). "Proteins in the periplasmic space and outer membrane vesicles of Rhizobium etli CE3 grown in minimal medium are largely distinct and change with growth phase.". MICROBIOLOGY-SGM. 165(6):638-650. [doi:10.1099/mic.0.000720]30358529
2019Luisa Castrejon-Godinez, M, Laura Ortiz-Hernandez, M, Salazar, E, Encarnacion, S, Mussali-Galante, P, Tovar-Sanchez, E, Sanchez-Salinas, E, Rodriguez, A. (2019). "Transcriptional analysis reveals the metabolic state of Burkholderia zhejiangensis CEIB S4-3 during methyl parathion degradation". Peerj. 7():e6822-. [doi:10.7717/peerj.6822]31086743
2019Becerra-Rivera, V, Dunn, M. (2019). "Polyamine biosynthesis and biological roles in Rhizobia". Fems Microbiology Letters. 366(7):fnz084-. [doi:10.1093/femsle/fnz084]31062028
2019Alonso-Bastida, R, Encarnación-Guevara, S. (2019). "Proteomic insights into lysine acetylation and the implications for medical research". EXPERT REVIEW OF PROTEOMICS. 16(1):1-3. [doi:10.1080/14789450.2019.1557050]30523736
2019Taboada, H, Dunn, M, Meneses, N, Vargas-Lagunas, C, Buchs, N, Andrade-Domínguez, A, Encarnación, S. (2019). "Qualitative changes in proteins contained in outer membrane vesicles produced by Rhizobium etli grown in the presence of the nod gene inducer naringenin.". Archives Of Microbiology. 201(9):1173-1194. [doi:10.1007/s00203-019-01682-4]31172251
2018Paik, Y, Lane, L, Kawamura, T, Chen, Y, Cho, J, Labaer, J, Yoo, J, Domont, G, Corrales, F, Omenn, G, Archakov, A, Encarnación-Guevara, S, Lui, S, Salekdeh, G, Cho, J, Kim, C, Overall, C. (2018). "Launching the C-HPP neXt-CP50 Pilot Project for Functional Characterization of Identified Proteins with No Known Function". JOURNAL OF PROTEOME RESEARCH. 17(12):4042-4050. [doi:10.1021/acs.jproteome.8b00383]30269496
2018Aguilar, C, Martinez-Batallar, G, Flores, N, Moreno-Avitia, F, Encarnacion, S, Escalante, A, Bolivar, F. (2018). "Analysis of differentially upregulated proteins in ptsHIcrr(-) and rppH(-) mutants in Escherichia coli during an adaptive laboratory evolution experiment". Applied Microbiology And Biotechnology. 102(23):10193-10208. [doi:10.1007/s00253-018-9397-3]30284012
2018Avila-Calderón ED, Otero-Olarra JE, Flores-Romo L, Peralta H, Aguilera-Arreola MG, Morales-García MR, Calderón-Amador J, Medina-Chávez O, Donis-Maturano L, Ruiz-Palma MDS, Contreras-Rodríguez A. (2018). "The Outer Membrane Vesicles of Aeromonas hydrophila ATCC 7966 TM : A Proteomic Analysis and Effect on Host Cells.". Frontiers in Microbiology. 9():2765-2765. [doi:10.3389/fmicb.2018.02765]30519218
2018Fernández-Coto, D, Gil, J, Hernández, A, Herrera-Goepfert, R, Castro-Romero, I, Hernández-Márquez, E, Arenas-Linares, A, Calderon-Sosa, V, Sanchez-Aleman, M, Mendez-Tenorio, A, Encarnación-Guevara, S, Ayala, G. (2018). "Quantitative proteomics reveals proteins involved in the progression from non-cancerous lesions to gastric cancer". Journal Of Proteomics. 186():15-27. [doi:10.1016/j.jprot.2018.07.013]30048774
2018Aguilar A, Mora Y, Dávalos A, Girard L, Mora J, Peralta H. (2018). "Analysis of genome sequence and symbiotic ability of rhizobial strains isolated from seeds of common bean (Phaseolus vulgaris).". Bmc Genomics. 19(1):645-645. [doi:10.1186/s12864-018-5023-0]30165827
2018Guevara-Luna, J, Alvarez-Fitz, P, Ríos-Leal, E, Acevedo-Quiroz, M, Encarnación-Guevara, S, Moreno-Godinez, M, Castellanos-Escamilla, M, Toribio-Jiménez, J, Romero-Ramírez, Y. (2018). "Biotransformation of benzo[a]pyrene by the thermophilic bacterium Bacillus licheniformis M2-7". World Journal Of Microbiology & Biotechnology. 34(7):88-. [doi:10.1007/s11274-018-2469-9]29886516
2018Toledo-Leyva, A, Cesar Villegas-Pineda, J, Encarnacion-Guevara, S, Gallardo-Rincon, D, Talamas-Rohana, P. (2018). "Effect of ovarian cancer ascites on SKOV-3 cells proteome: new proteins associated with aggressive phenotype in epithelial ovarian cancer". Proteome Science. 16(1):3-3. [doi:10.1186/s12953-018-0133-9]29456457
2018Becerra-Rivera, V, Bergström, E, Thomas-Oates, J, Dunn, M. (2018). "Polyamines are required for normal growth in Sinorhizobium meliloti". MICROBIOLOGY-SGM. 164(4):600-613. [doi:10.1099/mic.0.000615]29619919
2017Gil J, Ramírez-Torres A, Chiappe D, Luna-Peñaloza J, Fernandez-Reyes FC, Arcos-Encarnación B, Contreras S, Encarnación-Guevara S. (2017). "Lysine acetylation stoichiometry and proteomics analyses reveal pathways regulated by sirtuin 1 in human cells". JOURNAL OF BIOLOGICAL CHEMISTRY. 292(44):18129-18144. [doi:10.1074/jbc.M117.784546]28893905
2017Gamez-Reyes, A, Becerra-Lobato, N, Augusto Ramirez-Trujillo, J, Martinez-Romero, E, Dunn, M, Hernandez-Lucas, I. (2017). "The Rhizobium leucaenae CFN 299 pSym plasmid contains genes expressed in free life and symbiosis, as well as two replication systems". Annals of Microbiology. 67(3):263-273. [doi:10.1007/s13213-017-1257-3]
2017Meneses, N, Taboada, H, Dunn, M, Vargas, M, Buchs, N, Heller, M, Encarnación, S. (2017). "The naringenin-induced exoproteome of Rhizobium etli CE3". Archives Of Microbiology. 199(5):737-755. [doi:10.1007/s00203-017-1351-8]28255691
2017Vargas-Lagunas, C, Mora, Y, Diaz, R, Martinez-Batallar, G, Girard, L, Encarnacion, S, Peralta, H, Mora, J. (2017). "Overproduction of Sinorhizobium meliloti argC (N-acetyl-gamma-glutamyl phosphate reductase) promotes growth delay and inefficient nodules". Fems Microbiology Letters. 364(23):fnx233-. [doi:10.1093/femsle/fnx233]29121239
2017Gil, J, Ramirez-Torres, A, Encarnacion-Guevara, S. (2017). "Lysine acetylation and cancer: A proteomics perspective". Journal Of Proteomics. 150():297-309. [doi:10.1016/j.jprot.2016.10.003]27746255
2017Garcia-Gomez, E, Jaso-Vera, M, Juarez-Verdayes, M, Alcantar-Curiel, M, Zenteno, J, Betanzos-Cabrera, G, Peralta, H, Rodriguez-Martinez, S, Cancino-Diaz, M, Jan-Roblero, J, Cancino-Diaz, J. (2017). "The95 G mutation in the 5'untranslated region of the norA gene increases efflux activity in Staphylococcus epidermidis isolates". Microbial Pathogenesis. 103():139-148. [doi:10.1016/j.micpath.2016.12.021]28017900
2017Dunn, M. (2017). "Rhizobial Amino Acid Metabolism: Polyamine Biosynthesis and Functions". Handbook Of Microbial Metabolism Of Amino Acids. ():352-370.
2017Rosas-Pérez, T, Dunn, M, Martínez-Romero, E. (2017). "The Symbiome of Llaveia Cochineals (Hemiptera: Coccoidea: Monophlebidae) Includes a Gammaproteobacterial Cosymbiont Sodalis TME1 and the Known Candidatus Walczuchella monophlebidarum". Insect Physiology and Ecology. ():115-134. [doi:10.5772/66442]
2017Herrera Y., Contreras S., Hernández M., Álvarez L., Mora Y., Encarnación-Guevara S.. (2017). "Displacers improve the selectivity of phosphopeptide enrichment by metal oxide affinity chromatography". Boletin Medico del Hospital Infantil de Mexico. 74(3):200-207. [doi:10.1016/j.bmhimx.2017.03.008]29382487
2017Encarnación-Guevara S.. (2017). "The dawn and the first twenty-five years of proteomics in Mexico: a personal chronicle". Boletin Medico del Hospital Infantil de Mexico. 74(3):208-211. [doi:10.1016/j.bmhimx.2017.03.006]29382488
2017Patiño-Lopez G., Encarnación-Guevara S.. (2017). "Clinical Proteomics in Mexico: where do we stand?". Boletin Medico del Hospital Infantil de Mexico. 74(3):173-174. [doi:10.1016/j.bmhimx.2017.04.001]29382483
2017Hernandez-Vargas, M, Gil, J, Lozano, L, Pedraza-Escalona, M, Ortiz, E, Encarnacion-Guevara, S, Alagon, A, Corzo, G. (2017). "Proteomic and transcriptomic analysis of saliva components from the hematophagous reduviid Triatoma Pallidipennis". Journal Of Proteomics. 162():30-39. [doi:10.1016/j.jprot.2017.04.022]28442446
2016Aguilar A, Peralta H, Mora Y, Díaz R, Vargas-Lagunas C, Girard L, Mora J. (2016). "Genomic comparison of Agrobacterium Pusense strains isolated from bean nodules". Frontiers in Microbiology. 7(OCT):1720-1720. [doi:10.3389/fmicb.2016.01720]27833604
2016Alvarado-Delgado A, Perales Ortiz G, Tello-López ÁT, Encarnación S, Conde R, Martínez-Batallar ÁG, Moran-Francia K, Lanz-Mendoza H. (2016). "Infection with Plasmodium berghei ookinetes alters protein expression in the brain of Anopheles albimanus mosquitoes". PARASITES & VECTORS. 9(1):542-542. [doi:10.1186/s13071-016-1830-9]27724938
2016Peralta H, Aguilar A, Díaz R, Mora Y, Martínez-Batallar G, Salazar E, Vargas-Lagunas C, Martínez E, Encarnación S, Girard L, Mora J. (2016). "Genomic studies of nitrogen-fixing rhizobial strains from Phaseolus vulgaris seeds and nodules". Bmc Genomics. 17(1):1-1. [doi:10.1186/s12864-016-3053-z]27601031
2016Alfonso-Gordillo, G, Cristiani-Urbina, E, Mateo Flores-Ortiz, C, Peralta, H, Carlos Cancino-Diaz, J, Antonio Cruz-Maya, J, Jan-Roblero, J. (2016). "Stenotrophomonas maltophilia isolated from gasoline-contaminated soil is capable of degrading methyl tert-butyl ether". ELECTRONIC JOURNAL OF BIOTECHNOLOGY. 23():12-20. [doi:10.1016/j.ejbt.2016.06.006]
2016Santillán O, Ramírez-Romero MA, Lozano L, Checa A, Encarnación SM, Dávila G. (2016). "Region 4 of Rhizobium etli primary sigma factor (SigA) confers transcriptional laxity in Escherichia coli". Frontiers in Microbiology. 7(JUL):1078-1078. [doi:10.3389/fmicb.2016.01078]27468278
2016Yadira Lopez-Chavez, M, Guillen-Navarro, K, Bertolini, V, Encarnacion, S, Hernandez-Ortiz, M, Sanchez-Moreno, I, Damon, A. (2016). "Proteomic and morphometric study of the in vitro interaction between Oncidium Sphacelatum Lindl. (Orchidaceae) and Thanatephorus sp RG26 (Ceratobasidiaceae)". Mycorrhiza. 26(5):353-365. [doi:10.1007/s00572-015-0676-x]26732875
2016Diener C, Muñoz-Gonzalez F, Encarnación S, Resendis-Antonio O. (2016). "The space of enzyme regulation in HeLa cells can be inferred from its intracellular metabolome". SCIENTIFIC REPORTS. 6():28415-28415. [doi:10.1038/srep28415]27335086
2016Augusto Ramirez-Trujillo, J, Dunn, M, Suarez-Rodriguez, R, Hernandez-Lucas, I. (2016). "The Sinorhizobium meliloti glyoxylate cycle enzyme isocitrate lyase (aceA) is required for the utilization of poly-ß-hydroxybutyrate during carbon starvation". Annals of Microbiology. 66(2):921-924. [doi:10.1007/s13213-015-1131-0]
2016Moreno Castillo, B, Dunn, M, Guillen Navarro, K, Holguin Melendez, F, Hernandez Ortiz, M, Encarnacion Guevara, S, Huerta Palacios, G. (2016). "Antifungal performance of extracellular chitinases and culture supernatants of Streptomyces galilaeus CFFSUR-B12 against Mycosphaerella Fijiensis Morelet". World Journal Of Microbiology & Biotechnology. 32(3):1-12. [doi:10.1007/s11274-015-1993-0]26873555
2016Guzman-Flores, J, Flores-Perez, E, Hernandez-Ortiz, M, Lopez-Briones, S, Ramirez-Emiliano, J, Encarnacion-Guevara, S, Perez-Vazquez, V. (2016). "Comparative Proteomics of Liver of the Diabetic Obese db/db and Non-Obese or Diabetic Mice". Current Proteomics. 13(3):231-236. [doi:10.2174/1570164613666160722102430]
2016Reyes-Perez, A, del Carmen Vargas, M, Hernandez, M, Aguirre-von-Wobeser, E, Perez-Rueda, E, Encarnacion, S. (2016). "Transcriptomic analysis of the process of biofilm formation in Rhizobium etli CFN42". Archives Of Microbiology. 198(9):847-860. [doi:10.1007/s00203-016-1241-5]27226009
2015Ramon-Perez, M, Diaz-Cedillo, F, Contreras-Rodriguez, A, Betanzos-Cabrera, G, Peralta, H, Rodriguez-Martinez, S, Cancino-Diaz, M, Jan-Roblero, J, Cancino Diaz, J. (2015). "Different sensitivity levels to norspermidine on biofilm formation in clinical and commensal Staphylococcus epidermidis strains". Microbial Pathogenesis. 79():8-16. [doi:10.1016/j.micpath.2014.12.004]25549879
2015Hernandez, V, Girard, L, Hernandez-Lucas, I, Vazquez, A, Ortiz-Ortiz, C, Diaz, R, Dunn, M. (2015). "Genetic and biochemical characterization of arginine biosynthesis in Sinorhizobium meliloti 1021". MICROBIOLOGY-SGM. 161(8):1671-1682. [doi:10.1099/mic.0.000122]26271664
2015Frederick Dunn, M. (2015). "Key roles of microsymbiont amino acid metabolism in Rhizobia-legume interactions". Critical Reviews in Microbiology. 41(4):411-451. [doi:10.3109/1040841X.2013.856854]24601835
2015Ormeño-Orrillo, E, Servín-Garcidueñas, L, Rogel, M, González Zúñiga, V, Peralta, H, Mora, J, Martínez-Romero, J, Martinez-Romero, E. (2015). "Taxonomy of Rhizobia and agrobacteria from the Rhizobiaceae family in light of genomics". Systematic And Applied Microbiology. 38(4):287-291. [doi:10.1016/j.syapm.2014.12.002]25660942
2015Ingrid Gutierrez-Roman, M, Holguin-Melendez, F, Dunn, M, Guillen-Navarro, K, Huerta-Palacios, G. (2015). "Antifungal activity of Serratia marcescens CFFSUR-B2 purified chitinolytic enzymes and prodigiosin against Mycosphaerella Fijiensis, causal agent of black Sigatoka in banana (Musa spp.)". Biocontrol. 60(4):565-572. [doi:10.1007/s10526-015-9655-6]
2014de Luna-Valdez, L, Martinez-Batallar, A, Hernandez-Ortiz, M, Encarnacion-Gueuara, S, Ramos-Vega, M, Lopez-Bucio, J, Leon, P, Guevara-Garcia, A. (2014). "Proteomic analysis of chloroplast biogenesis (clb) mutants uncovers novel proteins potentially involved in the development of Arabidopsis thaliana chloroplasts". Journal Of Proteomics. 111(SI):148-164. [doi:10.1016/j.jprot.2014.07.003]25154054
2014Trejo-Hernandez, A, Andrade-Dominguez, A, Hernandez, M, Encarnacion, S. (2014). "Interspecies competition triggers virulence and mutability in Candida albicans-pseudomonas Aeruginosa mixed biofilms". ISME JOURNAL. 8(10):1974-1988. [doi:10.1038/ismej.2014.53]24739628
2014Mora, Y, Diaz, R, Vargas-Lagunas, C, Peralta, H, Guerrero, G, Aguilar, A, Encarnacion, S, Girard, L, Mora, J. (2014). "Nitrogen-fixing rhizobial strains isolated from common bean seeds: Phylogeny, physiology, and genome analysis". Applied And Environmental Microbiology. 80(18):5644-5654. [doi:10.1128/AEM.01491-14]25002426
2014Villarreal, J, Becerra-Lobato, N, Rebollar-Flores, J, Medina-Aparicio, L, Carbajal-Gómez, E, Zavala-Garcia, M, Vázquez, A, Gutierrez-Ríos, R, Encarnación Guevara, S, Martínez Batallar, Á, Calva, E, Hernández-Lucas, I. (2014). "The Salmonella enterica serovar Typhi ltrR-ompR-ompC-ompF genes are involved in resistance to the bile salt sodium deoxycholate and in bacterial transformation". Molecular Microbiology. 92(5):1005-1024. [doi:10.1111/mmi.12610]24720747
2014Pérez-Vázquez, V, Guzmán-Flores, J, Mares-Alvarez, D, Hernández Ortiz, M, Macias-Cervantes, M, Ramírez-Emiliano, J, Encarnación Guevara, S. (2014). "Differential Proteomic Analysis of the Pancreas of Diabetic db/db Mice Reveals the Proteins Involved in the Development of Complications of Diabetes Mellitus". International Journal Of Molecular Sciences. 15(6):9579-9593. [doi:10.3390/ijms15069579]24886809
2014Andrade Domínguez, A, Salazar Bustamante, E, Vargas Lagunas, M, Kolter, R, Encarnación Guevara, S. (2014). "Eco-evolutionary feedbacks drive species interactions". ISME JOURNAL. 8(5):1041-1054. [doi:10.1038/ismej.2013.208]24304674
2014Rosas Pérez, T, Rosenblueth Laguette, M, Rincón-Rosales, R, Mora Celis, J, Martínez Romero, M. (2014). "Genome sequence of "Candidatus Walczuchella monophlebidarum" the flavobacterial endosymbiont of Llaveia axin axin (Hemiptera: Coccoidea: Monophlebidae)". Genome Biology And Evolution. 6(3):714-726. [doi:10.1093/gbe/evu049]24610838
2014Cocotl-Yañez, M, Moreno, S, Encarnación Guevara, S, López-Pliego, L, Castañeda, M, Espín, G. (2014). "A small heat-shock protein (Hsp20) regulated by RpoS is essential for cyst desiccation resistance in Azotobacter Vinelandii". MICROBIOLOGY-SGM. 160(3):479-487. [doi:10.1099/mic.0.073353-0]24385478
2014Garibay-Cerdenares, O, Hernández-Ramírez, V, Osorio-Trujillo, J, Hernández Ortiz, M, Gallardo-Rincón, D, Cantú de León, D, Encarnación Guevara, S, Villegas-Pineda, J, Talamas-Rohana, P. (2014). "Proteomic identification of fucosylated haptoglobin alpha isoforms in ascitic fluids and its localization in ovarian carcinoma tissues from Mexican patients". Journal Of Ovarian Research. 7(1):27-27. [doi:10.1186/1757-2215-7-27]24576319
2014Althabegoiti, M, Ormeño Orrillo, E, Lozano Aguirre Beltrán, L, Tejerizo, G, Rogel Hernández, M, Mora Celis, J, Martínez Romero, M. (2014). "Characterization of Rhizobium Grahamii extrachromosomal replicons and their transfer among Rhizobia". Bmc Microbiology. 14(1):6-6. [doi:10.1186/1471-2180-14-6]24397311
2014Gutiérrez-Roman, M, Dunn, M, Tinoco-Valencia, R, Holguin-Melendez, F, Huerta-Palacios, G, Guillen-Navarro, K. (2014). "Potentiation of the synergistic activities of chitinases chiA, chiB and chiC from Serratia marcescens CFFSUR-B2 by chitobiase (Chb) and chitin binding protein (CBP)". World Journal Of Microbiology & Biotechnology. 30(1):33-42. [doi:10.1007/s11274-013-1421-2]23824666
2013de Luna, L, León, P, Encarnación Guevara, S, Guevara-García, A. (2013). "Chloroplast omics". Barh Delmya. ():-.
2013Gutiérrez-Román, M, Dunn, M, Tinoco-Valencia, F, Holguín-Meléndez, K, Guillen Navarro, G, Huerta-Palacios, G. (2013). "Antifungal activity of chitinases (chiA, chiC and chiB) produced by Serratia marcescens CFFSUR-B2 against Mycosphaerella Fijiensis causal agent of black sigatoka in banana (Musa spp.)". Acta Phytopathol. 43():96-.
2013Higareda Almaraz, J, Valtierra Gutiérrez, I, Hernández Ortiz, M, Contreras Martínez, S, Hernádez, E, Encarnación Guevara, S. (2013). "Analysis and Prediction of Pathways in HeLa Cells by Integrating Biological Levels of Organization with Systems-Biology Approaches". Plos One. 8(6):UNSP e65433-. [doi:10.1371/journal.pone.0065433]23785426
2013Ramírez Yáñez, M, Guillén, G, Fuentes Membreño, S, Iñiguez Rabago, L, Aparicio Fabre, R, Zamorano Sánchez, D, Encarnación Guevara, S, Panzeri, D, Castiglioni, B, Cremonesi, P, Strozzi, F, Stella, A, Girard Cuesy, M, Sparvoli, F, Hernández Delgado, G. (2013). "Transcript profiling of common bean nodules subjected to oxidative stress". Physiologia Plantarum. 149(3):389-407. [doi:10.1111/ppl.12040]23432573
2013Rodríguez-Cruz, M, Coral-Vázquez, R, Hernández-Stengele, G, Sánchez, R, Salazar Bustamante, E, Sánchez-Muñoz, F, Encarnación Guevara, S, Ramirez-Salcedo, J. (2013). "Identification of Putative Ortholog Gene Blocks Involved in Gestant and Lactating Mammary Gland Development: A Rodent Cross- Species Microarray Transcriptomics Approach". INTERNATIONAL JOURNAL OF GENOMICS. 2013():624681-624681. [doi:10.1155/2013/624681]24288657
2013Martínez Aguilar, L, Salazar-Salazar, C, Díaz Mendez, R, Caballero Mellado, J, Hirsch, A, Vasquez-Murrieta, M, Estrada De Los Santos, P. (2013). "Burkholderia Caballeronis sp nov., a nitrogen fixing species isolated from tomato (Lycopersicon esculentum) with the ability to effectively nodulate Phaseolus vulgaris". Antonie Van Leeuwenhoek International Journal of General and Molecular; Microbiology. 104(6):1063-1071. [doi:10.1007/s10482-013-0028-9]24057982
2013Esparza-Garrido, R, Velazquez-Flores, M, Diegoperez-Ramírez, J, López-Aguilar, E, Siordia-Reyes, G, Hernández Ortiz, M, Martínez Batallar, Á, Encarnación Guevara, S, Salamanca-Gomez, F, Arenas-Aranda, D. (2013). "A proteomic approach of pediatric astrocytomas: MiRNAs and network insight". Journal Of Proteomics. 94():162-175. [doi:10.1016/j.jprot.2013.09.009]24060999
2012Resendis Antonio, O, Hernández Ortiz, M, Pérez-Tejada Domínguez, Y, Encarnación Guevara, S. (2012). "Functional Modules, Structural Topology, and Optimal Activity in Metabolic Networks". Plos Computational Biology. 8(10):1002720-. [doi:10.1371/journal.pcbi.1002720]23071431
2012Juárez-Verdayes, M, González-Uribe, P, Peralta Díaz, H, Rodríguez-Martínez, S, Jan-Roblero, J, Escamilla-Hernández, R, Cancino-Díaz, M, Cancino-Díaz, J. (2012). "Detection of hssS, hssR, hrtA, and hrtB genes and their expression by hemin in Staphylococcus epidermidis". Canadian Journal Of Microbiology. 58(9):1063-1072. [doi:10.1139/W2012-086]22906238
2012Sánchez, D, Otero, L, Hernández Ortiz, M, Serra, A, Encarnación Guevara, S, Domenech, C, Lisa, A. (2012). "A pseudomonas Aeruginosa PA01 acetylcholinesterase is encoded by the PA4921 gene and belongs to the SGNH hydrolase family". Microbiological Research. 167(6):317-325. [doi:10.1016/j.micres.2011.11.005]22192836
2012Chino-Flores, C, Dantan-González, E, Vázquez-Ramos, A, Tinoco-Valencia, R, Díaz Mendez, R, Sánchez-Salinas, E, Castrejón-Godinez, M, Ramos-Quintana, F, Ortíz-Hernandez, M. (2012). "Isolation of the opdE gene that encodes for a new hydrolase of Enterobacter sp capable of degrading organophosphorus pesticides". BIODEGRADATION. 23(3):387-397. [doi:10.1007/s10532-011-9517-6]22065283
2012Cancino-Rodezno, A, Lozano Aguirre Beltrán, L, Oppert, C, Castro, J, Lanz-Mendoza, H, Encarnación Guevara, S, Evans, A, Gill, S, Soberon, M, Jurat-Fuentes, J, Bravo, A. (2012). "Comparative proteomic analysis of Aedes Aegypti larval midgut after intoxication with Cry11Aa toxin from Bacillus thuringiensis". Plos One. 7(5):37034-. [doi:10.1371/journal.pone.0037034]22615881
2012Martínez-Gómez, K, Flores, N, Castañeda, H, Martínez Batallar, Á, Hernández-Chávez, G, Ramírez, O, Gosset, G, Encarnación Guevara, S, Bolivar, F. (2012). "New insights into Escherichia coli metabolism: carbon scavenging, acetate metabolism and carbon recycling responses during growth on glycerol". Microbial Cell Factories. 11():46-46. [doi:10.1186/1475-2859-11-46]22513097
2012Ávila-Calderón, E, López-Merino, A, Jain, N, Peralta, H, López-Villegas, E, Sriranganathan, N, Boyle, S, Witonsky, S, Contreras-RodrÍguez, A. (2012). "Characterization of outer membrane vesicles from Brucella melitensis and protection induced in mice". CLINICAL & DEVELOPMENTAL IMMUNOLOGY. 2012():352493-352493. [doi:10.1155/2012/352493]22242036
2012Gutiérrez-Roman, M, Holguin-Melendez, F, Bello-Mendoza, R, Guillén-Navarro, K, Dunn, M, Huerta-Palacios, G. (2012). "Production of prodigiosin and chitinases by tropical Serratia marcescens strains with potential to control plant pathogens". World Journal Of Microbiology & Biotechnology. 28(1):145-153. [doi:10.1007/s11274-011-0803-6]22806790
2011Díaz Mendez, R, Vargas Lagunas, M, Villalobos López, M, Peralta Díaz, H, Pérez-Tejada Domínguez, Y, Encarnación Guevara, S, Girard Cuesy, M, Mora Celis, J. (2011). "argC orthologs from Rhizobiales show diverse profiles of transcriptional efficiency and functionality in Sinorhizobium meliloti". Journal Of Bacteriology. 193(2):460-472. [doi:10.1128/JB.01010-10]21075924
2011Gómez Hernández, N, Reyes González, A, Sanchez, C, Pérez-Tejada Domínguez, Y, Delgado, M, Girard Cuesy, M. (2011). "Regulation and Symbiotic Role of nirK and norC Expression in Rhizobium etli". Molecular Plant-Microbe Interactions. 24(2):233-245. [doi:10.1094/MPMI-07-10-0173]21043576
2011Higareda Almaraz, J, Enríquez Gasca, M, Hernández Ortiz, M, Resendis Antonio, O, Encarnación Guevara, S. (2011). "Proteomic patterns of cervical cancer cell lines, a network perspective". Bmc Systems Biology. 5():96-96. [doi:10.1186/1752-0509-5-96]21696634
2011Dunn, M. (2011). "Anaplerotic function of phosphoenolpyruvate carboxylase in Bradyrhizobium japonicum USDA110". Current Microbiology. 62(6):1782-1788. [doi:10.1007/s00284-011-9928-y]21479798
2011Resendis Antonio, O, Hernández Ortiz, M, Salazar Bustamante, E, Contreras Martínez, S, Martínez Batallar, Á, Pérez-Tejada Domínguez, Y, Encarnación Guevara, S. (2011). "Systems biology of bacterial nitrogen fixation: High-throughput technology and its integrative description with constraint-based modeling". Bmc Systems Biology. 5():120-120. [doi:10.1186/1752-0509-5-120]21801415
2011Peralta Díaz, H, Guerrero Ruiz, M, Aguilar Vera, O, Mora Celis, J. (2011). "Sequence variability of Rhizobiales orthologs and relationship with physico-chemical characteristics of proteins". Biology Direct. 6():48-48. [doi:10.1186/1745-6150-6-48]21970442
2010Davila-Martinez, Y, Laura Ramos-Vega, A, Contreras-Martinez, S, Encarnacion, S, Geiger, O, Lopez-Lara, I. (2010). "SMc01553 is the sixth acyl carrier protein in Sinorhizobium meliloti 1021". MICROBIOLOGY-SGM. 156(1):230-239. [doi:10.1099/mic.0.033480-0]19797355
2010Resendis-Antonio, O, Checa, A, Encarnacion, S. (2010). "Modeling Core Metabolism in Cancer Cells: Surveying the Topology Underlying the Warburg Effect". Plos One. 5(8):e12383-. [doi:10.1371/journal.pone.0012383]20811631
2010Mora Celis, J. (2010). "La UNAM por México". Comisión Universitaria para los festejos de los 100 años de la Universidad Nacional Autónoma de México. ():325-348.
2010Gonzalez, V, Acosta, J, Santamaria, R, Bustos, P, Fernandez, J, Hernandez Gonzalez, I, Diaz, R, Flores, M, Palacios, R, Mora, J, Davila, G. (2010). "Conserved symbiotic plasmid DNA sequences in the multireplicon pangenomic structure of Rhizobium etli". Applied And Environmental Microbiology. 76(5):1604-1614. [doi:10.1128/AEM.02039-09]20048063
2010Salazar, E, Diaz-Mejia, J, Moreno-Hagelsieb, G, Martinez-Batallar, G, Mora, Y, Mora, J, Encarnacion, S. (2010). "Characterization of the nif A-RpoN regulon in Rhizobium etli in free life and in symbiosis with Phaseolus vulgaris". Applied And Environmental Microbiology. 76(13):4510-4520. [doi:10.1128/AEM.02007-09]20453139
2010Meneses Moreno, N, Mendonza-Hernández, G, Encarnación Guevara, S. (2010). "The extracellular proteome of Rhizobium etli CE3 in exponential and stationary growth phase". Proteome Science. 8():51-51. [doi:10.1186/1477-5956-8-51]20942974
2009Reyes-Perez, A, Hernández Ortiz, M, Encarnacion, S. (2009). "Proteome analysis of the different stages of the Biofilm formation in Rhizobium etli". Clinical Proteomics. 5(SUPPLEMENT 1):107-107.
2009Dunn, M, Ramirez-Trujillo, J, Hernandez-Lucas, I. (2009). "Major roles of isocitrate lyase and malate synthase in bacterial and fungal pathogenesis". MICROBIOLOGY-SGM. 155(10):3166-3175. [doi:10.1099/mic.0.030858-0]19684068
2009Martinez-Salazar, J, Salazar, E, Encarnacion, S, Ramirez-Romero, M, Rivera, J. (2009). "Role of the Extracytoplasmic Function Sigma Factor RpoE4 in Oxidative and Osmotic Stress Responses in Rhizobium etli". Journal Of Bacteriology. 191(13):4122-4132. [doi:10.1128/JB.01626-08]19376852
2009Laura Ramos-Vega, A, Davila-Martinez, Y, Sohlenkamp, C, Contreras-Martinez, S, Encarnacion, S, Geiger, O, Lopez-Lara, I. (2009). "SMb20651 is another acyl carrier protein from Sinorhizobium meliloti". MICROBIOLOGY-SGM. 155(1):257-267. [doi:10.1099/mic.0.022079-0]19118366
2009Rodriguez-Alvarez, M, Mendoza-Hernandez, G, Encarnacion, S, Jose Calva, J, Lopez-Vidal, Y. (2009). "Phenotypic differences between BCG vaccines at the proteome level". Tuberculosis. 89(2):126-135. [doi:10.1016/]19231290
2009Balleza, E, Lopez-Bojorquez, L, Martinez-Antonio, A, Resendis-Antonio, O, Lozada-Chavez, I, Balderas-Martinez, Y, Encarnacion, S, Collado-Vides, J. (2009). "Regulation by transcription factors in bacteria: Beyond description". Fems Microbiology Reviews. 33(1):133-151. [doi:10.1111/j.1574-6976.2008.00145.x]19076632
2008Mora Celis, J, Peralta Díaz, H, Encarnación Guevara, S. (2008). "Nitrógeno, fisiología y genómica". Descubrimientos y Aportaciones Científicas y Humanísticas Mexicanas en el Siglo XX. (0):642-651.
2008Hernandez-Lucas, I, Gallego-Hernandez, A, Encarnacion, S, Fernandez-Mora, M, Martinez-Batallar, A, Salgado, H, Oropeza, R, Calva, E. (2008). "The LysR-type transcriptional regulator LeuO controls expression of several genes in Salmonella enterica serovar typhi". Journal Of Bacteriology. 190(5):1658-1670. [doi:10.1128/JB.01649-07]18156266
2008Rodriguez-Perez, M, Medina-Aunon, A, Encarnacion-Guevara, S, Bernal-Silvia, S, Barrera-Saldana, H, Pablo Albar-Ramirez, J. (2008). "In Silico analysis of protein neoplastic biomarkers for cervix and uterine cancer". Clinical and Translational Oncology. 10(10):604-617. [doi:10.1007/s12094-008-0261-2]18940741
2008Contreras-Rodriguez, A, Quiroz-Limon, J, Martins, A, Peralta, H, Avila-Calderon, E, Sriranganathan, N, Boyle, S, Lopez-Merino, A. (2008). "Enzymatic, immunological and phylogenetic characterization of Brucella suis urease". Bmc Microbiology. 8():121-121. [doi:10.1186/1471-2180-8-121]18638408
2008Martinez-Aguilar, L, Diaz, R, Pena-Cabriales, J, Estrada-de los Santos, P, Dunn, M, Caballero-Mellado, J. (2008). "Multichromosomal genome structure and confirmation of diazotrophy in novel plant-associated Burkholderia species". Applied And Environmental Microbiology. 74(14):4574-4579. [doi:10.1128/AEM.00201-08]18502926
2008Taboada, H, Encarnacion, S, Vargas, M, Mora, Y, Miranda-Rios, J, Soberon, M, Mora, J. (2008). "Thiamine limitation determines the transition from aerobic to fermentative-like metabolism in Rhizobium etli CE3". Fems Microbiology Letters. 279(1):48-55. [doi:10.1111/j.1574-6968.2007.01006.x]18177306
2008Vargas, M, Villalobos, M, Diaz, R, Flores, M, Contreras, S, Encarnacion, S, Mora, Y, Dunn, M, Girard, L, Mora, J. (2008). "COMPARATIVE ANALYSIS OF argC PROTEIN EXPRESSION IN Rhizobium SPECIES". Biological Nitrogen Fixation: Towards Poverty Alleviation Through Sustainable Agriculture. 42():239-240.
2008Encarnación Guevara, S, Salazar Bustamante, E, Martínez Batallar, Á, Hernández Ortiz, M, Reyes Pérez, A, Vargas Lagunas, M, Contreras Martínez, S, Elizalde Contreras, J, Noguez, R, Meneses, M, Bueno, O, Sánchez, R, Pérez-Tejada Domínguez, Y, Mora Celis, J. (2008). "Proteomic and Transcriptomic Approaches to Study Global Genome Expression in Rhizobium etli and Sinorhizobium meliloti". Current Plant Science and Biotechnology. Agriculture Biological Nitrogen Fixation, Sustainable Agriculture and the Environment. 42():231-232.
2008Velazquez-Arellano, A, Cerevisiae, S, Elegans, C, Norvergicus, R, Ortega-Cuellar, D, Hernandez-Mendoza, A, Gonzalez-Alvarez, R, Encarnacion, S, Salazar, E, Uribe-Carvajal, S, Galvez-Mariscal, A. (2008). "Biotin Is a Major Regulator of Carbon Fluxes Genes in Eukaryotes". JOURNAL OF NUTRIGENETICS AND NUTRIGENOMICS. 1(6):294-294.
2008Velázquez-Arellano A., Encarnación S.. (2008). "Role of Proteomics in the Study of Nutrition". JOURNAL OF NUTRIGENETICS AND NUTRIGENOMICS. 1(1-2):55-58. [doi:10.1159/000109875]19918115
2007Resendis Antonio, O, Reed, J, Encarnación Guevara, S, Collado Vides, P, Palsson, B. (2007). "Metabolic reconstruction and modeling of nitrogen fixation in Rhizobium etli". Plos Computational Biology. 3(10):1887-1895. [doi:10.1371/journal.pcbi.0030192]17922569
2007Ramirez-Trujillo, J, Encarnacion, S, Salazar, E, de los Santos, A, Dunn, M, Emerich, D, Calva, E, Hernandez-Lucas, I. (2007). "Functional characterization of the Sinorhizobium meliloti acetate metabolism genes aceA, SMc00767, and glcB". Journal Of Bacteriology. 189(16):5875-5884. [doi:10.1128/JB.00385-07]17526694
2007Peralta Díaz, H. (2007). "Azospirillum, micorrizas y Rhizobium. Biofertilizantes microbianos para la agricultura sustentable". Agricultura sustentable y biofertilizantes. 1():118-129.
2006Encarnación-Guevara S.. (2006). "Genómica y genómica funcional en microbiología". Revista Latinoamericana de Microbiología. 48(2):131-132. 17578085
2006Batista, C, D'Suze, G, Gomez-Lagunas, F, Zamudio, F, Encamacion, S, Sevcik, C, Possani, L. (2006). "Proteomic analysis of Tityus discrepans scorpion venom and amino acid sequence of novel toxins". Proteomics. 6(12):3718-3727. [doi:10.1002/pmic.200500525]16705749
2006Peralta Díaz, H. (2006). "Biofertilizantes. Alternativa sustentable para la agricultura en méxico". El Abasto. Panorama de la distribución alimenticia en México. ():190-195.
2006Encarnación Guevara, S, Salazar Bustamante, E, Martínez Batallar, Á, Hernández Ortiz, M, Reyes Pérez, A, Contreras Martínez, S, Vargas Lagunas, M, Domínguez Vidaña, R, Gonzaga Jáuregui, C, Pérez-Tejada Domínguez, Y, Rivero Zaragoza, M, Mora Celis, J. (2006). "GENÓMICA FUNCIONAL EN RIZOBIACEAS". Revista Latinoamericana de Microbiología. 48(2):135-141.
2006Caballero-Mellado, J, Tenorio Salgado, S, Onofre Lemus, J, Castro González, R, Estrada De Los Santos, P, Paredes Valdez, G, Peña-Cabriales, J, Díaz-Méndez, R, Martínez-Aguilar, L. (2006). "Mechanisms involved in the promotion of plant growth expressed by new species of nitrogen-fixer Burkholderia". Revista Latinoamericana De Microbiologia. 48(2):155-156.
2005Guerrero, G, Peralta, H, Aguilar, A, Diaz, R, Villalobos, M, Medrano-Soto, A, Mora, J. (2005). "Evolutionary, structural and functional relationships revealed by comparative analysis of syntenic genes in Rhizobiales". Bmc Evolutionary Biology. 5():55-55. [doi:10.1186/1471-2148-5-55]16229745
2005Guillen-Navarro, K, Araiza, G, Garcia-de los Santos, A, Mora, Y, Dunn, M. (2005). "The Rhizobium etli bioMNY operon is involved in biotin transport". Fems Microbiology Letters. 250(2):209-219. [doi:10.1016/j.femsle.2005.07.020]16099603
2005Encarnación Guevara, S, Salazar Bustamante, E, Hernández Ortiz, M, Martínez Batallar, Á, García, J, Flores, H, Reyes Pérez, A, Vargas Lagunas, M, Contreras Martínez, S, Pérez-Tejada Domínguez, Y, Mora Celis, J. (2005). "Proteomic and transcriptomic approaches to study global genome expression in free-living and symbiotically-associated Rhizobium etli and Sinorhizobium meliloti". Current Plant Science and Biotechnology. Agriculture Biological Nitrogen Fixation, Sustainable Agriculture and the Environment. 41():142-.
2005Vargas, M, Encarnacion, S, Girard, M, Reyes, A, Mora, Y, Mora, J. (2005). "Characterization of the alternative protection programs against oxidative-stress in free life and symbiosis from Rhizobium etli". Biological Nitrogen Fixation, Sustainable Agriculture And The Environment. 41():331-331.
2005Flores López, M, Morales Reyes, L, Ávila Casanueva, A, González Zúñiga, V, Bustos Arcos, V, García Alonso, D, Pérez-Tejada Domínguez, Y, Guo, X, Collado Vides, P, Pinero, D, Dávila Ramos, J, Mora Celis, J, Palacios de la Lama, R. (2005). "Diversification of DNA sequences in the symbiotic genome of Rhizobium etli". Journal Of Bacteriology. 187(21):7185-7192. [doi:10.1128/JB.187.21.7185-7192.2005]16237002
2005Vargas Lagunas, M, Encarnación Guevara, S, Girard Cuesy, M, Reyes Pérez, A, Pérez-Tejada Domínguez, Y, Mora Celis, J. (2005). "Characterization of the alternative protection programs against oxidative-stress in free life and simbiosis from Rhizobium etli". Current Plant Science and Biotechnology. Agriculture Biological Nitrogen Fixation, Sustainable Agriculture and the Environment. 41():331-.
2005Chavéz-Zamora, J, Salazar Bustamante, E, Encarnación Guevara, S. (2005). "Global analisis of the genome expresion in Sinorhizobium meliloti strain 1021, using microarray". Current Plant Science and Biotechnology. Agriculture Biological Nitrogen Fixation, Sustainable Agriculture and the Environment. 41():331-.
2005Encarnación Guevara, S. (2005). "The dawn of functional genomics in nitrogen fixation Research". Genomes and Genomics of Nitrogen Fixing Organisms. ():143-163.
2005Guillen-Navarro, K, Encarnacion, S, Dunn, M. (2005). "Biotin biosynthesis, transport and utilization in Rhizobia". Fems Microbiology Letters. 246(2):159-165. [doi:10.1016/j.femsle.2005.04.020]15899401
2005Encarnacion, S, Hernandez, M, Martinez-Batallar, G, Contreras, S, Vargas, M, Mora, J. (2005). "Comparative proteomics using 2-D gel electrophoresis and mass spectrometry as tools to dissect stimulons and regulons in bacteria with sequenced or partially sequenced genomes". BIOLOGICAL PROCEDURES ONLINE. 7():117-135. [doi:10.1251/bpo110]16145578
2005Guillen-Navarro, K, Araiza, G, Dunn, M. (2005). "Molecular characterization of genes involved in biotin uptake in Rhizobium etli CE3". Biological Nitrogen Fixation, Sustainable Agriculture And The Environment. 41():243-243.
2005Chavez-Zamora, J, Salazar, E, Encarnacion, S. (2005). "Global analysis of genome expression in Sinorhizobium meliloti strain 1021 using microarrays.". Biological Nitrogen Fixation, Sustainable Agriculture And The Environment. 41():141-141.
2004Vargas, M, Encarnacin, S, Girard, M, Reyes, A, Mora, Y, Mora, J. (2004). "Physiological and proteome characterizations of oxidative-stress response in Rhizobium etli during free life and symbiosis with Phaseolus vulgaris.". MOLECULAR & CELLULAR PROTEOMICS. 3(10, S):160-160.
2004Encarnacion, S, Garcia, J, Hernandez, M, Vargas, M, Contreras, S, Mora, J. (2004). "Protein expression during biofilm formation in Rhizobium etli and Sinorhizobium meliloti". MOLECULAR & CELLULAR PROTEOMICS. 3(10, S):150-150.
2004Peralta, H, Mora, Y, Salazar, E, Encarnacion, S, Palacios, R, Mora, J. (2004). "Engineering the nifH promoter region and abolishing poly-ß -hydroxybutyrate accumulation in Rhizobium etli enhance nitrogen fixation in symbiosis with Phaseolus vulgaris". Applied And Environmental Microbiology. 70(6):3272-3281. [doi:10.1128/AEM.70.6.3272-3281.2004]15184121
2004Batista, C, Del Pozo, L, Zamudio, F, Contreras Martínez, S, Becerril, B, Wanke, E, Possani, L. (2004). "Proteomics of the venom from the Amazonian scorpion Tityus Cambridgei and the role of prolines on mass spectrometry analysis of toxins". JOURNAL OF CHROMATOGRAPHY B-ANALYTICAL TECHNOLOGIES IN THE BIOMEDICAL AND LIFE SCIENCES. 803(1):55-66. [doi:10.1016/j.jchromb.2003.09.002]15025998
2004Dunn, M, Araiza, G, Mora, J. (2004). "Biochemical characterization of a Rhizobium etli monovalent cation-stimulated acyl-coenzyme A carboxylase with a high substrate specificity constant for propionyl-coenzyme A". MICROBIOLOGY-SGM. 150(2):399-406. [doi:10.1099/mic.0.26779-0]14766918
2003Vargas, M, Encarnacion, S, Davalos, A, Reyes-Perez, A, Mora, Y, Garcia-de los Santos, A, Brom, S, Moral, J. (2003). "Only one catalase, katG, is detectable in Rhizobium etli, and is encoded along with the regulator OxyR on a plasmid replicon". MICROBIOLOGY-SGM. 149(5):1165-1176. [doi:10.1099/mic.0.25909-0]12724378
2003Medina, G, Juarez, K, Diaz, R, Soberon-Chavez, G. (2003). "Transcriptional regulation of pseudomonas Aeruginosa rhlR, encoding a quorum-sensing regulatory protein". MICROBIOLOGY-SGM. 149(11):3073-3081. [doi:10.1099/mic.0.26282-0]14600219
2003Encarnacion, S, Guzman, Y, Dunn, M, Hernandez, M, Vargas, M, Mora, J. (2003). "Proteome analysis of aerobic and fermentative metabolism in Rhizobium etli CE3". Proteomics. 3(6):1077-1085. [doi:10.1002/pmic.200300427]12833533
2002Dunn, M, Araiza, G, Encarnacion, S, del Vargas, M, Mora, J. (2002). "Effect of aniA (carbon flux regulator) and phaC (poly-ß-hydroxybutyrate synthase) mutations on pyruvate metabolism in Rhizobium etli". Journal Of Bacteriology. 184(8):2296-2299. [doi:10.1128/JB.184.8.2296-2299.2002]11914362
2002Encarnacion, S, del Vargas, M, Dunn, M, Davalos, A, Mendoza, G, Mora, Y, Mora, J. (2002). "aniA regulates reserve polymer accumulation and global protein expression in Rhizobium etli". Journal Of Bacteriology. 184(8):2287-2295. [doi:10.1128/JB.184.8.2287-2295.2002]11914361
2001Dunn, M, Araiza, G, Finan, T. (2001). "Cloning and characterization of the pyruvate carboxylase from Sinorhizobium meliloti Rm1021". Archives Of Microbiology. 176(5):355-363. [doi:10.1007/s002030100336]11702077
2000Castillo, A, Taboada, H, Mendoza, A, Valderrama, B, Encarnacion, S, Mora, J. (2000). "Role of GOGAT in carbon and nitrogen partitioning in Rhizobium etli". MICROBIOLOGY-SGM. 146(7):1627-1637. [doi:10.1099/00221287-146-7-1627]10878127
1999Ramirez, M, Valderrama, B, Arredondo-Peter, R, Soberon, M, Mora, J, Hernandez, G. (1999). "Rhizobium etli genetically engineered for the heterologous expression of Vitreoscilla sp. hemoglobin: Effects on free-living and symbiosis". Molecular Plant-Microbe Interactions. 12(11):1008-1015. [doi:10.1094/MPMI.1999.12.11.1008]
1998Encarnacion, S, Calderon, J, Gelbard, A, Cooper, A, Mora, J. (1998). "Glutamine biosynthesis and the utilization of succinate and glutamine by Rhizobium etli and Sinorhizobium meliloti". MICROBIOLOGY-SGM. 144(9):2629-2638. [doi:10.1099/00221287-144-9-2629]9782512
1998Dunn, M. (1998). "Tricarboxylic acid cycle and anaplerotic enzymes in Rhizobia". Fems Microbiology Reviews. 22(2):105-123. [doi:10.1016/S0168-6445(98)00010-2]9729766
1998Mendoza, A, Valderrama, B, Leija, A, Mora, J. (1998). "nifA-dependent expression of glutamate dehydrogenase in Rhizobium etli modifies nitrogen partitioning during symbiosis". Molecular Plant-Microbe Interactions. 11(2):83-90. [doi:10.1094/MPMI.1998.11.2.83]9450332
1998Mandon, K, Michel-Reydellet, N, Encarnacion, S, Kaminski, P, Leija, A, Cevallos, M, Elmerich, C, Mora, J. (1998). "Poly-ß-hydroxybutyrate turnover in Azorhizobium caulinodans is required for growth and affects nifA expression". Journal Of Bacteriology. 180(19):5070-5076. [doi:10.1128/JB.180.19.5070-5076.1998]9748438
1997Dunn, M, Araiza, G, Cevallos, M, Mora, J. (1997). "Regulation of pyruvate carboxylase in Rhizobium etli". Fems Microbiology Letters. 157(2):301-306. [doi:10.1016/S0378-1097(97)00491-6]9435112
1997MirandaRios, J, Morera, C, Taboada, H, Davalos, A, Encarnacion, S, Mora, J, Soberon, M. (1997). "Expression of thiamin biosynthetic genes (thiCOGE) and production of symbiotic terminal oxidase cbb(3), in Rhizobium etli". Journal Of Bacteriology. 179(22):6887-6893. [doi:10.1128/jb.179.22.6887-6893.1997]9371431
1996Dunn, M, Encarnacion, S, Araiza, G, Vargas, M, Davalos, A, Peralta, H, Mora, Y, Mora, J. (1996). "Pyruvate carboxylase from Rhizobium etli: Mutant characterization, nucleotide sequence, and physiological role". Journal Of Bacteriology. 178(20):5960-5970. [doi:10.1128/jb.178.20.5960-5970.1996]8830693
1996Taboada, H, Encarnacion, S, Vargas, M, Mora, Y, MartinezRomero, E, Mora, J. (1996). "Glutamine synthetase II constitutes a novel taxonomic marker in Rhizobium etli and other Rhizobium species". INTERNATIONAL JOURNAL OF SYSTEMATIC BACTERIOLOGY. 46(2):485-491. [doi:10.1099/00207713-46-2-485]
1996Cevallos, M, Encarnacion, S, Leija, A, Mora, Y, Mora, J. (1996). "Genetic and physiological characterization of a Rhizobium etli mutant strain unable to synthesize poly-ß-hydroxybutyrate". Journal Of Bacteriology. 178(6):1646-1654. [doi:10.1128/jb.178.6.1646-1654.1996]8626293
1996Valderrama, B, Davalos, A, Girard, L, Morett, E, Mora, J. (1996). "Regulatory proteins and CIS-acting elements involved in the transcriptional control of Rhizobium etli reiterated nifH genes". Journal Of Bacteriology. 178(11):3119-3126. [doi:10.1128/jb.178.11.3119-3126.1996]8655489
1995Mendoza Herrera, A, Leija Salas, A, Martínez Romero, M, Hernández Delgado, G, Mora Celis, J. (1995). "The enhancement of ammonium assimilation in Rhizobium etli prevents nodulation of Phaseolus vulgaris". Molecular Plant-Microbe Interactions. 8(4):584-592. [doi:10.1094/MPMI-8-0584]8589413
1995ENCARNACION, S, DUNN, M, WILLMS, K, MORA, J. (1995). "Fermentative and aerobic metabolism in Rhizobium etli". Journal Of Bacteriology. 177(11):3058-3066. [doi:10.1128/jb.177.11.3058-3066.1995]7768801
1990MORA, J. (1990). "Glutamine metabolism and cycling in Neurospora crassa". MICROBIOLOGICAL REVIEWS. 54(3):293-304. [doi:10.1128/MMBR.54.3.293-304.1990]2145504
1990CALDERON, J, MARTINEZ, L, MORA, J. (1990). "Isolation and characterization of a Neurospora crassa mutant altered in the a polypeptide of glutamine synthetase". Journal Of Bacteriology. 172(9):4996-5000. [doi:10.1128/jb.172.9.4996-5000.1990]1975579
1989CALDERON, J, Cooper, A, Gelbard, A, MORA, J. (1989). "13N isotope studies of glutamine assimilation pathways in Neurospora crassa.". Journal Of Bacteriology. 171(3):1772-1774. [doi:10.1128/jb.171.3.1772-1774.1989]2522094
1989CALDERON, J, MORA, J. (1989). "Glutamine assimilation pathways in Neurospora crassa growing on glutamine as sole nitrogen and carbon source". Journal Of General Microbiology. 135(10):2699-2707. [doi:10.1099/00221287-135-10-2699]2576659
1988BRAVO, A, Mora, J. (1988). "Ammonium assimilation in Rhizobium phaseoli by the glutamine synthetase-glutamate synthase pathway.". Journal Of Bacteriology. 170(2):980-984. [doi:10.1128/jb.170.2.980-984.1988]2892829
1988Mora Celis, J, Bravo, A, Calderón, J, Encarnación Guevara, S, Hernández Delgado, G, Martínez, L, Narváez, V, Taboada Castro, H, Terrones, D. (1988). "Ex-planta nitrogen metabolismo in Rhizobium phaseoli". Molecular genetics of the plant-microbe interactions 1988, Proceedings of 4th International Symposium on Molecular Genetics of Plant-Microbe Interactions. ():130-134.
1988BRAVO, A, BECERRIL, B, MORA, J. (1988). "INTRODUCTION OF THE ESCHERICHIA-COLI gdhA GENE INTO Rhizobium-phaseoli - EFFECT ON NITROGEN-FIXATION". Journal Of Bacteriology. 170(2):985-988. [doi:10.1128/jb.170.2.985-988.1988]2892830
1987MORA, Y, HERNANDEZ, G, MORA, J. (1987). "Regulation of carbon and nitrogen flow by glutamate synthase in Neurospora crassa". Journal Of General Microbiology. 133(7):1667-1674. [doi:10.1099/00221287-133-7-1667]2959749
1986HERNANDEZ, G, MORA, J. (1986). "Glutamine synthesis regulates sucrose catabolism in Neurospora crassa". Journal Of General Microbiology. 132(12):3315-3323. [doi:10.1099/00221287-132-12-3315]
1986Leija, A, Ruíz-Herrera, J, MORA, J. (1986). "Effect of L-amino acids on Mucor rouxii dimorphism". Journal Of Bacteriology. 168(2):843-850. [doi:10.1128/jb.168.2.843-850.1986]3096961
1986HERNANDEZ, G, MORA, Y, MORA, J. (1986). "Regulation of glutamine synthesis by glycine and serine in Neurospora crassa". Journal Of Bacteriology. 165(1):133-138. [doi:10.1128/jb.165.1.133-138.1986]2867084
1985CALDERON, J, MORA, J. (1985). "Glutamine cycling in Neurospora crassa". Journal Of General Microbiology. 131(12):3237-3242. [doi:10.1099/00221287-131-12-3237]
1985CALDERON, J, MORETT, E, MORA, J. (1985). "?-Amidase pathway in the degradation of glutamine in Neurospora crassa". Journal Of Bacteriology. 161(2):807-809. 2857167
1983GONZALEZ, A, TENORIO, M, VACA, G, MORA, J. (1983). "Neurospora crassa mutant impaired in glutamine regulation". Journal Of Bacteriology. 155(1):1-7. 6134713
1983Hernandez, G, Sánchez-Pescador, R, PALACIOS, R, MORA, J. (1983). "Nitrogen source regulates glutamate dehydrogenase NADP synthesis in Neurospora crassa". Journal Of Bacteriology. 154(1):524-528. 6300039
1982LARA, M, BLANCO, L, CAMPOMANES, M, CALVA, E, PALACIOS, R, MORA, J. (1982). "Physiology of ammonium assimilation in Neurospora crassa". Journal Of Bacteriology. 150(1):105-112. [doi:10.1128/JB.150.1.105-112.1982]6120927
1980Hummelt, G, Mora Celis, J. (1980). "Regulation and function of glutamate synthase in Neurospora crassa". BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS. 96(4):1688-1694. [doi:10.1016/0006-291X(80)91368-6]6449930