Evolutionary Genomics

The Evolutionary Genomics Program (EGP) integrates diverse genomic approaches to understand the evolutionary processes that drive the diversification of bacteria. The first major center of interest in the EGP is to study the mechanisms that generate genomic changes and the forces of evolution that shape this variation. The second focus of the EGP is to understand how bacterial populations disperse over time and space (phylogeography). Our long-term goals are to decipher both the specific molecular mechanisms that produce genetic variation and the evolutionary and ecological drivers that determine the phylogeography of bacterial species. Some of the work done in EGP focus on the human bacterial pathogens Acinetobacter baumannii and Staphylococcus aureus – nosocomial pathogens of paramount importance for public health. These projects are in close collaboration with clinical microbiologists and medical doctors. Additionally, some other part of the work concentrates on the agriculturally important plant symbiont species from the genus Rhizobium and their bacteriophages. The research conducted at the EGP is heavily dependent on advanced genomic technologies and bioinformatics.

Group Staff

Miguel Ángel Carlos Cevallos GaosResearcherFull Professormac@ccg.unam.mx(777) 3114663
Víctor Manuel González ZúñigaResearcherAssociate Professorvgonzal@ccg.unam.mx(777) 3133881
Santiago Castillo RamírezResearcherAssociate Professoriago@ccg.unam.mx(777) 3133881
Rosa Isela Santamaria GutiérrezLaboratory TechnicianLaboratory Technicianrosa@ccg.unam.mx(777) 3133881
Virginia Patricia Bustos ArcosLaboratory TechnicianLaboratory Technicianpaty@ccg.unam.mx(777) 3133881
María de los Angeles Pérez OsegueraLaboratory TechnicianLaboratory Technicianaperez@ccg.unam.mx(777) 3133881
Irma Martínez FloresLaboratory TechnicianLaboratory Technicianimartflo@ccg.unam.mx(777) 3291690
Ivana Daisy Blancas NavaSupport staffOtherbnio140371@upemor.edu.mx(777) 3133881
José Espíritu SalazarSupport staffUNAMspirit@ccg.unam.mx(777) 3291690
María Soledad Juárez RamírezSupport staffUNAMsjuarez@ccg.unam.mx(777) 3133881
Mary Carmen Torres QuinteroPostdoctoral FellowDGAPAmctorqui@ccg.unam.mx(777) 3133881
Ismael Luis Hernández GonzálezPostdoctoral FellowDGAPAishergez@gmail.com(777) 3133881

Group Publications

2020Barrios-Villa, E, Martínez de la Peña, C, Lozano-Zaraín, P, Cevallos, M, Torres, C, Torres, A, Rocha-Gracia, R. (2020). "Comparative genomics of a subset of Adherent/Invasive Escherichia coli strains isolated from individuals without inflammatory bowel disease.". Genomics. 112(2):1813-1820. [doi:10.1016/j.ygeno.2019.10.013]31689478
2019Carreón-Rodríguez, O, Gutiérrez-Ríos, R, Acosta, J, Martinez, A, Cevallos, M. (2019). "Phenotypic and genomic analysis of Zymomonas mobilis ZM4 mutants with enhanced ethanol tolerance.". Biotechnology Reports. 23():e00328-. [doi:10.1016/j.btre.2019.e00328]30984572
2019Mateo-Estrada, V, Grana-Miraglia, L, Lopez-Leal, G, Castillo-Ramirez, S. (2019). "Phylogenomics Reveals Clear Cases of Misclassification and Genus-Wide Phylogenetic Markers for Acinetobacter.". Genome Biology And Evolution. 11(9):2531-2541. [doi:10.1093/gbe/evz178]31406982
2019Bello-Lopez, E, Castro-Jaimes, S, Angel Cevallos, M, del Carmen Rocha-Gracia, R, Castaneda-Lucio, M, Saenz, Y, Torres, C, Gutierrez-Cazares, Z, Martinez-Laguna, Y, Lozano-Zarain, P. (2019). "Resistome and a Novel bla(NDM-1)-Harboring Plasmid of an Acinetobacter haemolyticus Strain from a Children's Hospital in Puebla, Mexico". MICROBIAL DRUG RESISTANCE. ():-. [doi:10.1089/mdr.2019.0034]31335270
2019Lopez-Leal, G, Cesar Zuniga-Moya, J, Castro-Jaimes, S, Grana-Miraglia, L, Perez-Oseguera, A, Sarahi Reyes-Garcia, H, David Gough-Coto, S, Pavon-Madrid, R, Aurora Bejarano, S, Ferrera, A, Castillo-Ramirez, S, Cevallos, M. (2019). "Unexplored Genetic Diversity of Multidrug- and Extremely Drug-Resistant Acinetobacter baumannii Isolates from Tertiary Hospitals in Honduras". MICROBIAL DRUG RESISTANCE. 25(5):690-695. [doi:10.1089/mdr.2018.0311]30614762
2019Cevallos, M, Guerrero, G, Rios, S, Arroyo, A, Angel Villalobos, M, Porta, H. (2019). "The chloroplast genome of the desiccation-tolerant moss Pseudocrossidium replicatum (Taylor) R.H. Zander.". GENET MOL BIOL. 42(2):488-493. [doi:10.1590/1678-4685-GMB-2018-0184]31323081
2018Stefan, A, Van Cauwenberghe, J, Rosu, C, Stedel, C, Labrou, N, Flemetakis, E, Efrose, R. (2018). "Genetic diversity and structure of Rhizobium leguminosarum populations associated with clover plants are influenced by local environmental variables". Systematic And Applied Microbiology. 41(3):251-259. [doi:10.1016/j.syapm.2018.01.007]29452714
2018Frisch MB, Castillo-Ramirez S, Petit RA 3rd, Farley MM, Ray SM, Albrecht VS, Limbago BM, Hernandez J, See I, Satola SW, Read TD. (2018). "Invasive methicillin-resistant Staphylococcus aureus USA500 strains from the U.S. Emerging Infections Program constitute three geographically distinct lineages". mSphere. 3(3):e00571-17-. [doi:10.1128/mSphere.00571-17]29720528
2018Salgado, H, Martínez-Flores, I, Bustamante, V, Alquicira-Hernández, K, García-Sotelo, J, García-Alonso, D, Collado-Vides, J. (2018). "Using RegulonDB, the Escherichia coli K-12 Gene Regulatory Transcriptional Network Database.". Current Protocols in Bioinformatics. 61(1):1321-13230. [doi:10.1002/cpbi.43]30040192
2018Julieta Solis-Gonzalez, C, Dominguez-Malfavon, L, Vargas-Suarez, M, Gaytan, I, Angel Cevallos, M, Lozano, L, Javier Cruz-Gomez, M, Loza-Tavera, H. (2018). "Novel metabolic pathway for N-methylpyrrolidone degradation in Alicycliphilus sp. strain BQ1". Applied And Environmental Microbiology. 84(1):e02136-17-. [doi:10.1128/AEM.02136-17]29030443
2017Pérez-Oseguera Á, Castro-Jaimes S, Salgado-Camargo AD, Silva-Sanchez J, Garza-González E, Castillo-Ramírez S, Cevallos MÁ. (2017). "Complete genome sequence of a blaOXA-58-producing Acinetobacter baumannii strain isolated from a Mexican hospital". Microbiology Resource Announcements. 5(36):e00949-17-. [doi:10.1128/genomeA.00949-17]28883144
2017Romero-Gutierrez, T, Peguero-Sanchez, E, Cevallos, M, Batista, C, Ortiz, E, Possani, L. (2017). "A Deeper Examination of Thorellius Atrox Scorpion Venom Components with Omic Techonologies". Toxins. 9(12):399-. [doi:10.3390/toxins9120399]29231872
2017Olvera, C, Santamaría, R, Bustos, P, Vallejo, C, Montor, J, Wacher, C, Munguia, A. (2017). "Draft genome sequence of Leuconostoc citreum CW28 isolated from pozol, a pre-Hispanic fermented corn beverage". Microbiology Resource Announcements. 5(48):e01283-17-. [doi:10.1128/genomeA.01283-17]
2017Sigala, J, Suárez, B, Lara, A, Borgne, S, Bustos, P, Santamaría, R, González, V, Martinez, A. (2017). "Genomic and physiological characterization of a laboratory-isolated Acinetobacter Schindleri ACE strain that quickly and efficiently catabolizes acetate". MICROBIOLOGY-UK. 163(7):1052-1064. [doi:10.1099/mic.0.000488]28671531
2017Santamaría, R, Bustos, P, Pérez-Carrascal, O, Miranda-Sánchez, F, Vinuesa, P, Martínez-Flores, I, Juárez, S, Lozano, L, Martínez-Romero, E, Cevallos, M, Romero, D, Dávila, G, Ormeño-Orrillo, E, González, V. (2017). "Complete Genome Sequences of Eight Rhizobium Symbionts Associated with Common Bean ( Phaseolus vulgaris ).". Genome Announcements. 5(30):-. [doi:10.1128/genomeA.00645-17]28751391
2017Perez-Morales, D, Banda, M, Elizabeth Chau, N, Salgado, H, Martinez-Flores, I, Antonio Ibarra, J, Ilyas, B, Coombes, B, Bustamante, V. (2017). "The transcriptional regulator SsrB is involved in a molecular switch controlling virulence lifestyles of Salmonella". PLOS PATHOGENS. 13(7):e1006497-. [doi:10.1371/journal.ppat.1006497]28704543
2017Alatorre-Fernandez, P, Mayoral-Teran, C, Velazquez-Acosta, C, Franco-Rodriguez, C, Flores-Moreno, K, Angel Cevallos, M, Lopez-Vidal, Y, Volkow-Fernandez, P. (2017). "A polyclonal outbreak of bloodstream infections by Enterococcus faecium in patients with hematologic malignancies". American Journal of Infection Control. 45(3):260-266. [doi:10.1016/j.ajic.2016.10.002]27852447
2017Angel Vences-Guzman, M, Goetting-Minesky, M, Guan, Z, Castillo-Ramirez, S, America Cordoba-Castro, L, Lopez-Lara, I, Geiger, O, Sohlenkamp, C, Fenno, J. (2017). "1,2-Diacylglycerol choline phosphotransferase catalyzes the final step in the unique Treponema denticola phosphatidylcholine biosynthesis pathway". Molecular Microbiology. 103(5):896-912. [doi:10.1111/mmi.13596]28009086
2017Bustos, P, Santamaría, R, Pérez-Carrascal, O, Acosta, J, Lozano, L, Juárez, S, Martínez-Flores, I, Martínez-Romero, E, Cevallos, M, Romero, D, Dávila, G, Vinuesa, P, Miranda, F, Ormeño, E, González, V. (2017). "Complete Genome Sequences of Three Rhizobium gallicum Symbionts Associated with Common Bean ( Phaseolus vulgaris ).". Genome Announcements. 5(11):-. [doi:10.1128/genomeA.00030-17]28302777
2017Saldaña-Ahuactzi Z., Cruz-Córdova A., Rodea G.E., Porta H., Navarro-Ocaña A., Eslava-Campos C., Cevallos M.A., Xicohtencatl-Cortes J.. (2017). "Genome sequence of enterotoxigenic Escherichia coli strain FMU073332". Microbiology Resource Announcements. 5(8):e01600-16-. [doi:10.1128/genomeA.01600-16]28232434
2016Castillo-Ramirez, S, Fingerle, V, Jungnick, S, Straubinger, R, Krebs, S, Blum, H, Meinel, D, Hofmann, H, Guertler, P, Sing, A, Margos, G. (2016). "Trans-Atlantic exchanges have shaped the population structure of the Lyme disease agent Borrelia burgdorferi sensu stricto". SCIENTIFIC REPORTS. 6():22794-22794. [doi:10.1038/srep22794]26955886
2016Garza-Ramos U, Silva-Sánchez J, Catalán-Nájera J, Barrios H, Rodríguez-Medina N, Garza-González E, Cevallos MA, Lozano L. (2016). "Draft genome sequence of a hypermucoviscous extended-spectrum-ß-lactamase-producing Klebsiella quasipneumoniae subsp. similipneumoniae clinical isolate". Microbiology Resource Announcements. 4(4):e00475-16-. [doi:10.1128/genomeA.00475-16]27389261
2016Aanensen, D, Feil, E, Holden, M, Dordel, J, Yeats, C, Fedosejev, A, Goater, R, Castillo-Ramirez, S, Corander, J, Colijn, C, Chlebowicz, M, Schouls, L, Heck, M, Pluister, G, Ruimy, R, Kahlmeter, G, Ahman, J, Matuschek, E, Friedrich, A, Parkhill, J, Bentley, S, Spratt, B, Grundmann, H, ESCMID Study Grp Mol Epidemiologic, European Staphylococcal Ref Lab Wo. (2016). "Whole-genome sequencing for routine pathogen surveillance in public health: A population snapshot of invasive Staphylococcus aureus in Europe". Mbio. 7(3):e00444-16-. [doi:10.1128/mBio.00444-16]27150362
2016Gama-Castro, S, Salgado, H, Santos-Zavaleta, A, Ledezma-Tejeida, D, Muñiz-Rascado, L, García-Sotelo, J, Alquicira-Hernández, K, Martínez-Flores, I, Pannier, L, Castro-Mondragón, J, Medina-Rivera, A, Solano-Lira, H, Bonavides-Martínez, C, Pérez-Rueda, E, Alquicira-Hernández, S, Porrón-Sotelo, L, López-Fuentes, A, Hernández-Koutoucheva, A, Del Moral-Chavez, V, Rinaldi, F, Collado-Vides, J. (2016). "RegulonDB version 9.0: High-level integration of gene regulation, coexpression, motif clustering and beyond". Nucleic Acids Research. 44(D1):133-143. [doi:10.1093/nar/gkv1156]26527724
2016Perez Carrascal, O, VanInsberghe, D, Juarez, S, Polz, M, Vinuesa, P, Gonzalez, V. (2016). "Population genomics of the symbiotic plasmids of sympatric nitrogen-fixing Rhizobium species associated with Phaseolus vulgaris". Environmental Microbiology. 18(8):2660-2676. [doi:10.1111/1462-2920.13415]27312778
2016Bolanos, L, Rosenblueth, M, Castillo-Ramirez, S, Figuier-Huttin, G, Martinez-Romero, E. (2016). "Species-specific diversity of novel bacterial lineages and differential abundance of predicted pathways for toxic compound degradation in scorpion gut microbiota". Environmental Microbiology. 18(5):1364-1378. [doi:10.1111/1462-2920.12939]26058415
2016Gonzalez-Villoria, A, Tamayo-Legorreta, E, Garza-Ramos, U, Barrios, H, Sanchez-Perez, A, Rodriguez-Medina, N, Uribe-Avina, N, Cevallos, M, Silva-Sanchez, J, CRAB Study Grp. (2016). "A Multicenter Study in Mexico Finds Acinetobacter baumannii Clinical Isolates Belonging to Clonal Complexes 636(B) (113(B)) and 92(B) Harboring OXA-72, OXA-239, and OXA-469". Antimicrobial Agents and Chemotherapy. 60(4):2587-2588. [doi:10.1128/AAC.02042-15]26833167
2016Tamayo-Legorreta, E, Turrubiartes-Martinez, E, Garza-Ramos, U, Nino-Moreno, P, Barrios, H, Sanchez-Perez, A, Reyna-Flores, F, Tovar-Oviedo, J, Magana-Aquino, M, Angel Cevallos, M, Silva-Sanchez, J. (2016). "Outbreak Caused by bla(OXA-72)-Producing Acinetobacter baumannii ST417 Detected in Clinical and Environmental Isolates". MICROBIAL DRUG RESISTANCE. 22(2):129-133. [doi:10.1089/mdr.2015.0157]26954369
2016Mucito-Varela E., Castillo-Rojas G., Cevallos M.A., Lozano L., Merino E., L�pez-Leal G., L�pez-Vidal Y.. (2016). "Complete genome sequence of Helicobacter Pylori strain 7C isolated from a Mexican patient with chronic gastritis". Microbiology Resource Announcements. 4(1):e01503-15-. [doi:10.1128/genomeA.01503-15]26744372
2016Castro-Jaimes S., Salgado-Camargo A.D., Gra�a-Miraglia L., Lozano L., Bocanegra-Ibarias P., Volkow-Fern�ndez P., Silva-Sanchez J., Castillo-Ram�rez S., Cevallos M.A.. (2016). "Complete genome sequence of a multidrug-resistant Acinetobacter baumannii isolate obtained from a Mexican hospital (sequence type 422)". Microbiology Resource Announcements. 4(3):e00583-16-. [doi:10.1128/genomeA.00583-16]27340065
2016Graña-Miraglia L., Lozano L., Castro-Jaimes S., Cevallos M.A., Volkow P., Castillo-Ramírez S.. (2016). "First genome sequence of a mexican multidrug-resistant Acinetobacter baumannii isolate". Microbiology Resource Announcements. 4(2):e00156-16-. [doi:10.1128/genomeA.00156-16]27013043
2016López-Leal G, Cevallos MA, Castillo-Ramírez S. (2016). "Evolution of a sigma factor: An All-In-One of Gene Duplication, Horizontal Gene Transfer, Purifying Selection, and Promoter Differentiation". Frontiers in Microbiology. 7(APR):581-581. [doi:10.3389/fmicb.2016.00581]27199915
2015Ezewudo, M, Joseph, S, Castillo-Ramirez, S, Dean, D, del Rio, C, Didelot, X, Dillon, J, Selden, R, Shafer, W, Turingan, R, Unemo, M, Read, T. (2015). "Population structure of Neisseria Gonorrhoeae based on whole genome data and its relationship with antibiotic resistance". Peerj. 2015(3):e806-. [doi:10.7717/peerj.806]25780762
2015Joseph, S, Marti, H, Didelot, X, Castillo-Ramirez, S, Read, T, Dean, D. (2015). "Chlamydiaceae genomics reveals interspecies admixture and the recent evolution of Chlamydia Abortus infecting lower mammalian species and humans". Genome Biology And Evolution. 7(11):3070-3084. [doi:10.1093/gbe/evv201]26507799
2015Ormeño-Orrillo, E, Servín-Garcidueñas, L, Rogel, M, González Zúñiga, V, Peralta, H, Mora, J, Martínez-Romero, J, Martinez-Romero, E. (2015). "Taxonomy of Rhizobia and agrobacteria from the Rhizobiaceae family in light of genomics". Systematic And Applied Microbiology. 38(4):287-291. [doi:10.1016/j.syapm.2014.12.002]25660942
2015Lozano, L, Santamaria Gutiérrez, R, Bustos, P. (2015). "Genomic Tools for the Study of Azospirillum and Other Plant Growth-Promoting Rhizobacteria". Handbook for Azospirillum: Technical Issues and Protocols. ():83-97. [doi:10.1007/978-3-319-06542-7_5]
2015Rivera-Urbalejo, A, Perez-Oseguera, A, Carreon-Rodriguez, O, Cevallos, M. (2015). "Mutations in an antisense RNA, involved in the replication control of a repABC plasmid, that disrupt plasmid incompatibility and mediate plasmid speciation". Plasmid. 78(SI):48-58. [doi:10.1016/j.plasmid.2015.01.004]25644116
2015Padilla, J, Bustos, P, Castro-Escarpulli, G, Sánchez-Varela, A, Palma-Martinez, I, Arzate-Barbosa, P, García-Pérez, C, López-López, M, González Zúñiga, V, Guo, X. (2015). "Draft genome sequence of Aeromonas caviae strain 429865 INP, isolated from a Mexican patient". Microbiology Resource Announcements. 3(5):e01240-15-. [doi:10.1128/genomeA.01240-15]26494682
2014Lopez-Leal, G, Luisa Tabche, M, Castillo-Ramirez, S, Mendoza-Vargas, A, Ramirez-Romero, M, Davila, G. (2014). "RNA-Seq analysis of the multipartite genome of Rhizobium etli CE3 shows different replicon contributions under heat and saline shock". Bmc Genomics. 15(1):770-770. [doi:10.1186/1471-2164-15-770]25201548
2014Rogel, M, Bustos, P, Santamaría, R, González Zúñiga, V, Romero, D, Cevallos, M, Lozano, L, Castro-Mondragón, J, Martínez-Romero, J, Ormeño-Orrillo, E, Martinez-Romero, E. (2014). "Genomic basis of symbiovar mimosae in Rhizobium etli". Bmc Genomics. 15(1):575-575. [doi:10.1186/1471-2164-15-575]25005495
2014Alberto Batista-Garcia, R, Sanchez-Reyes, A, Millan-Pacheco, C, Manuel Gonzalez-Zuniga, V, Juarez, S, Luis Folch-Mallol, J, Pastor, N. (2014). "A novel TctA citrate transporter from an activated sludge metagenome: Structural and mechanistic predictions for the TTT family". Proteins-Structure Function And Bioinformatics. 82(9):1756-1764. [doi:10.1002/prot.24529]24493659
2014Santamaria Gutiérrez, R, Bustos Arcos, V, Lozano Aguirre Beltrán, L, Rodríguez Sánchez, C, Fernandez Vázquez, J, Juárez Ramírez, M, Kameyama, L, Guarneros, G, Dávila Ramos, J, González Zúñiga, V. (2014). "Narrow-Host-Range Bacteriophages That Infect Rhizobium etli Associate with Distinct Genomic Types". Applied And Environmental Microbiology. 80(2):446-454. [doi:10.1128/AEM.02256-13]24185856
2014Castillo-Ramirez, S, Feil, E. (2014). "Towards a Synthesis of Population Genomics and Epidemiology: Next-Generation Sequencing of Bacterial Pathogens". Molecular Medical Microbiology: Second Edition. 1-3():337-345. [doi:10.1016/B978-0-12-397169-2.00018-4]
2014Martinez, L, Martínez Flores, I, Salgado Osorio, H, Fernández-Mora, M, Medina Rivera, A, Puente, J, Collado Vides, P, Bustamante, V. (2014). "In Silico identification and experimental characterization of regulatory elements controlling the expression of the Salmonella csrB and csrC genes". Journal Of Bacteriology. 196(2):325-336. [doi:10.1128/JB.00806-13]24187088
2013Tsai, I, Zarowiecki, M, Holroyd, N, Garciarrubio, A, Sánchez-Flores, A, Brooks, K, Tracey, A, Bobes, R, Fragoso, G, Sciutto, E, Aslett, M, Beasley, H, Bennett, H, Cai, J, Camicia, F, Clark, R, Cucher, M, De Silva, N, Day, T, Deplazes, P, Estrada, K, Fernández, C, Holland, P, Hou, J, Hu, S, Huckvale, T, Hung, S, Kamenetzky, L, Keane, J, Kiss, F, Koziol, U, Lambert, O, Liu, K, Luo, X, Luo, Y, Macchiaroli, N, Nichol, S, Paps, J, Parkinson, J, Pouchkina-Stantcheva, N, Riddiford, N, Rosenzvit, M, Salinas, G, Wasmuth, J, Zamanian, M, Zheng, Y, Garciarrubio, A, Bobes, R, Fragoso, G, Sánchez-Flores, A, Estrada, K, Cevallos Gaos, M, Morett, E, González Zúñiga, V, Portillo, T, Ochoa-Leyva, A, José, M, Sciutto, E, Landa, A, Jiménez, L, Valdés, V, Carrero, J, Larralde, C, Morales-Montor, J, Limón-Lason, J, Soberón, X, Laclette, J, Cai, X, Soberón, X, Olson, P, Laclette, J, Brehm, K, Berriman, M. (2013). "The genomes of four tapeworm species reveal adaptations to parasitism". Nature. 496(7443):57-63. [doi:10.1038/nature12031]23485966
2013Pérez Oseguera, M, Cevallos Gaos, M. (2013). "RepA and RepB exert plasmid incompatibility repressing the transcription of the repABC operon". Plasmid. 70(3):362-376. [doi:10.1016/j.plasmid.2013.08.001]24016735
2013Gerardo Trevino-Quintanilla, L, Augusto Freyre-Gonzalez, J, Martinez-Flores, I. (2013). "Anti-Sigma Factors in E-coli: Common Regulatory Mechanisms Controlling Sigma Factors Availability". Current Genomics. 14(6):378-387. [doi:10.2174/1389202911314060007]24396271
2013Pérez Segura, G, Pérez Oseguera, M, Cevallos Gaos, M. (2013). "The repAC replication system of the Rhizobium leguminosarum pRL7 plasmid is functional: Implications regarding the origin and evolution of repABC plasmids". Plasmid. 69(1):49-57. [doi:10.1016/j.plasmid.2012.08.003]22975386
2013Salgado Osorio, H, Peralta Gil, M, Gama Castro, M, Santos Zavaleta, A, Muñíz Rascado, L, Garcia Sotelo, J, Weiss, V, Solano Lira, H, Martínez Flores, I, Medina Rivera, A, Salgado Osorio, G, Alquicira Hernández, S, Alquicira Hernández, K, López Fuentes, A, Porrón Sotelo, L, Huerta Moreno, A, Bonavides Martínez, C, Balderas MartÍnez, Y, Pannier, L, Olvera, M, Labastida, A, Jiménez-Jacinto, V, Vega-Alvarado, L, del Moral Chávez, V, Hernández Álvarez, A, Morett, E, Collado Vides, P. (2013). "RegulonDB v8.0: Omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more". Nucleic Acids Research. 41(D1):203-213. [doi:10.1093/nar/gks1201]23203884
2013Castillo-Ramírez, S, Feil, E. (2013). "Population genetics". The Prokaryotes: Prokaryotic Biology And Symbiotic Associations. ():255-266. [doi:10.1007/978-3-642-30194-0_83]
2012Wisniewski-Dye, F, Lozano, L, Acosta-Cruz, E, Borland, S, Drogue, B, Prigent-Combaret, C, Rouy, Z, Barbe, V, Mendoza Herrera, A, Gonzalez, V, Mavingui, P. (2012). "Genome sequence of Azospirillum brasilense CBG497 and comparative analyses of Azospirillum core and accessory genomes provide insight into niche adaptation". Genes. 3(4):576-602. [doi:10.3390/genes3040576]24705077
2012Fernández-Sandoval, M, Huerta-Beristain, G, Trujillo-Martínez, B, Bustos Arcos, V, González Zúñiga, V, Bolivar, F, Gosset, G, Martínez, A. (2012). "Laboratory metabolic evolution improves acetate tolerance and growth on acetate of ethanologenic Escherichia coli under non-aerated conditions in glucose-mineral medium". Applied Microbiology And Biotechnology. 96(5):1291-1300. [doi:10.1007/s00253-012-4177-y]22669633
2012Althabegoiti, M, Lozano Aguirre Beltrán, L, Torres-Tejerizo, G, Ormeño Orrillo, E, Rogel Hernández, M, González Zúñiga, V, Martínez Romero, M. (2012). "Genome sequence of Rhizobium Grahamii CCGE502, a broad-host-range symbiont with low nodulation competitiveness in Phaseolus vulgaris". Journal Of Bacteriology. 194(23):6651-6652. [doi:10.1128/JB.01785-12]23144400
2012Tejerizo, G, Lozano, L, Gonzalez, V, Bustos, P, Romero, D, Brom, S. (2012). "Draft genome sequence of the bean-nodulating Sinorhizobium fredii strain GR64". Journal Of Bacteriology. 194(24):6978-6978. [doi:10.1128/JB.01882-12]23209231
2012de la Rosa, J, Ureostegui, P, Martínez, J, Martínez, C, Zuniga, V, Millan, J. (2012). "Babesia bigemina: Initial gene identification by Expressed Sequence Tags (EST) analysis of the intraerythrocytic stage". REVISTA MEXICANA DE CIENCIAS PECUARIAS. 3(1):61-87.
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