Evolutionary Genomics

The Evolutionary Genomics Program (EGP) integrates diverse genomic approaches to understand the evolutionary processes that drive the diversification of bacteria. The first major center of interest in the EGP is to study the mechanisms that generate genomic changes and the forces of evolution that shape this variation. The second focus of the EGP is to understand how bacterial populations disperse over time and space (phylogeography). Our long-term goals are to decipher both the specific molecular mechanisms that produce genetic variation and the evolutionary and ecological drivers that determine the phylogeography of bacterial species. Some of the work done in EGP focus on the human bacterial pathogens Acinetobacter baumannii and Staphylococcus aureus – nosocomial pathogens of paramount importance for public health. These projects are in close collaboration with clinical microbiologists and medical doctors. Additionally, some other part of the work concentrates on the agriculturally important plant symbiont species from the genus Rhizobium and their bacteriophages. The research conducted at the EGP is heavily dependent on advanced genomic technologies and bioinformatics.

Group Staff

NamePositionCategoryEmailTelephone
Miguel Ángel Carlos Cevallos GaosResearcherFull Professormac@ccg.unam.mx(777) 3114663
Víctor Manuel González ZúñigaResearcherAssociate Professorvgonzal@ccg.unam.mx(777) 3133881
Santiago Castillo RamírezResearcherAssociate Professoriago@ccg.unam.mx(777) 3133881
Rosa Isela Santamaria GutiérrezLaboratory TechnicianLaboratory Technicianrosa@ccg.unam.mx(777) 3133881
Virginia Patricia Bustos ArcosLaboratory TechnicianLaboratory Technicianpaty@ccg.unam.mx(777) 3133881
María de los Angeles Pérez OsegueraLaboratory TechnicianLaboratory Technicianaperez@ccg.unam.mx(777) 3133881
Irma Martínez FloresLaboratory TechnicianLaboratory Technicianimartflo@ccg.unam.mx(777) 3291690
José Espíritu SalazarSupport staffUNAMspirit@ccg.unam.mx(777) 3291690

Group Publications

YearPublicationPMID
2022Santamaría, R.I., Bustos, P., Van Cauwenberghe, J., González, V.. (2022). "Hidden diversity of double-stranded DNA phages in symbiotic Rhizobium species.". PHILOS T ROY SOC B. 377(1842):-. [doi:10.1098/rstb.2020.0468]34839703
2021Norte, A.C., Boyer, P.H., Castillo-Ramirez, S., Chvostác, M., Brahami, M.O., Rollins, R.E., Woudenberg, T., Didyk, Y.M., Derdakova, M., Núncio, M.S., de Carvalho, I.L., Margos, G., Fingerle, V.. (2021). "The Population Structure of Borrelia lusitaniae Is Reflected by a Population Division of Its Ixodes Vector.". Microorganisms. 9(5):-. [doi:10.3390/microorganisms9050933]33925391
2021Castillo-Ramírez, S., Ghaly, T., Gillings, M.. (2021). "Non-clinical settings - the understudied facet of antimicrobial drug resistance.". Environmental Microbiology. 23(12):7271-7274. [doi:10.1111/1462-2920.15841]34773441
2021Ford, S., Moeskjær, S., Young, P., Santamaría, R.I., Harrison, E.. (2021). "Introducing a Novel, Broad Host Range Temperate Phage Family Infecting Rhizobium leguminosarum and Beyond.". Frontiers in Microbiology. 12():-. [doi:10.3389/fmicb.2021.765271]34858375
2021de Luna-Valdez, L., Chenge-Espinosa, M., Hernández-Muñoz, A., Cordoba, E., López-Leal, G., Castillo-Ramírez, S., León, P.. (2021). "Reassessing the evolution of the 1-deoxy-D-xylulose 5-phosphate synthase family suggests a possible novel function for the DXS class 3 proteins.". Plant Science. 310():-. [doi:10.1016/j.plantsci.2021.110960]34315585
2021Escobedo-Muñoz, A.S., Bello-López, E., Velázquez-Acosta, C., Cornejo-Juárez, P., Volkow-Fernández, P., Cevallos, M.Á.. (2021). "Complete Genome Sequence of Acinetobacter junii Strain INC8271, Isolated from a Patient with Metastatic Cancer and Bacteremia.". Microbiology Resource Announcements. 10(33):-. [doi:10.1128/MRA.00604-21]34410161
2021Van Cauwenberghe, J., Santamaría, R.I., Bustos, P., Juárez, S., Ducci, M.A., Figueroa Fleming, T., Etcheverry, A.V., González, V.. (2021). "Spatial patterns in phage-Rhizobium coevolutionary interactions across regions of common bean domestication.". ISME JOURNAL. 15(7):2092-2106. [doi:10.1038/s41396-021-00907-z]33558688
2021Mateo-Estrada, V., Fernández-Vázquez, J.L., Moreno-Manjón, J., Hernández-González, I.L., Rodríguez-Noriega, E., Morfín-Otero, R., Alcántar-Curiel, M.D., Castillo-Ramírez, S.. (2021). "Accessory Genomic Epidemiology of Cocirculating Acinetobacter baumannii Clones.". mSystems. 6(4):-. [doi:10.1128/mSystems.00626-21]34282943
2021López-Leal, G., Reyes-Muñoz, A., Santamaria, R.I., Cevallos, M.A., Pérez-Monter, C., Castillo-Ramírez, S.. (2021). "A novel vieuvirus from multidrug-resistant Acinetobacter baumannii.". ARCH VIROL. 166(5):1401-1408. [doi:10.1007/s00705-021-05010-4]33635432
2021Evans, B.A., Kumar, A., Castillo-Ramírez, S.. (2021). "Editorial: Genomic Basis of Antibiotic Resistance and Virulence in Acinetobacter .". Frontiers in Microbiology. 12():-. [doi:10.3389/fmicb.2021.670975]33859632
2020Arredondo-Hernández, R., Schmulson, M., Orduña, P., López-Leal, G., Zarate, A.M., Alanis-Funes, G., Alcaraz, L.D., Santiago-Cruz, R., Cevallos, M.A., Villa, A.R., Ponce-de-León Rosales, S., López-Vidal, Y.. (2020). "Mucosal Microbiome Profiles Polygenic Irritable Bowel Syndrome in Mestizo Individuals.". FRONT CELL INFECT MI. 10():-. [doi:10.3389/fcimb.2020.00072]32266159
2020Singh, Manu, De Silva, P. Malaka, Al-Saadi, Yasser, Switala, Jacek, Loewen, Peter C., Hausner, Georg, Chen, Wangxue, Hernandez, Ismael, Castillo-Ramirez, Santiago, Kumar, Ayush. (2020). "Characterization of extremely drug-resistant and hypervirulent Acinetobacter baumannii ab030". ANTIBIOTICS-BASEL. 9(6):-. [doi:10.3390/antibiotics9060328]32560407
2020Castro-Jaimes, S., Bello-López, E., Velázquez-Acosta, C., Volkow-Fernández, P., Lozano-Zarain, P., Castillo-Ramírez, S., Cevallos, M.A.. (2020). "Chromosome Architecture and Gene Content of the Emergent Pathogen Acinetobacter haemolyticus .". Frontiers in Microbiology. 11():-. [doi:10.3389/fmicb.2020.00926]32670207
2020Barrios-Villa, E., Martínez de la Peña, C.F., Lozano-Zaraín, P., Cevallos, M.A., Torres, C., Torres, A.G., Rocha-Gracia, R.d.C.. (2020). "Comparative genomics of a subset of Adherent/Invasive Escherichia coli strains isolated from individuals without inflammatory bowel disease.". Genomics. 112(2):1813-1820. [doi:10.1016/j.ygeno.2019.10.013]31689478
2020De la Rosa, C., Lozano, L., Castillo-Ramírez, S., Covarrubias, A.A., Reyes, J.L.. (2020). "Origin and Evolutionary Dynamics of the miR2119 and ADH1 Regulatory Module in Legumes.". Genome Biology And Evolution. 12(12):2355-2369. [doi:10.1093/gbe/evaa205]33045056
2020Mayoral-Terán, C., Flores-Moreno, K., Cevallos, M.A., Volkow-Fernández, P., Castillo-Ramírez, S., Graña-Miraglia, L., López-Vidal, Y.. (2020). "High Phenotypic and Genotypic Diversity of Enterococcus faecium from Clinical and Commensal Isolates in Third Level Hospital.". MICROBIAL DRUG RESISTANCE. 26(3):227-237. [doi:10.1089/mdr.2019.0039]31545121
2020Castillo-Ramírez, S., Mateo-Estrada, V., Gonzalez-Rocha, G., Opazo-Capurro, A.. (2020). "Phylogeographical Analyses and Antibiotic Resistance Genes of Acinetobacter johnsonii Highlight Its Clinical Relevance". mSphere. 5(4):-. [doi:10.1128/mSphere.00581-20]32611704
2020Salgado-Camargo, A.D., Castro-Jaimes, S., Gutierrez-Rios, R.M., Lozano, L.F., Altamirano-Pacheco, L., Silva-Sanchez, J., Pérez-Oseguera, Á., Volkow, P., Castillo-Ramírez, S., Cevallos, M.A.. (2020). "Structure and Evolution of Acinetobacter baumannii Plasmids". Frontiers in Microbiology. 11():-. [doi:10.3389/fmicb.2020.01283]32625185
2020Hernández-González, I.L., Castillo-Ramírez, S.. (2020). "Antibiotic-resistant Acinetobacter baumannii is a One Health problem". The Lancet. Microbe. 1(7):279-279. [doi:10.1016/S2666-5247(20)30167-1]
2020Cornejo-Juárez, P., Cevallos, M.A., Castro-Jaimes, S., Castillo-Ramìrez, S., Velázquez-Acosta, C., Martìnez-Oliva, D., Pérez-Oseguera, A., Rivera-Buendìa, F., Volkow-Fernández, P.. (2020). "High mortality in an outbreak of multidrug resistant Acinetobacter baumannii infection introduced to an oncological hospital by a patient transferred from a general hospital.". Plos One. 15(7):-. [doi:10.1371/journal.pone.0234684]32702006
2020Cevallos, M.A., Guerrero, G., Ríos, S., Arroyo, A., Villalobos, M.A., Porta, H.. (2020). "The mitogenome of Pseudocrossidium replicatum, a desiccation-tolerant moss". MITOCHONDRIAL DNA PART B-RESOURCES. 5(3):2339-2341. [doi:10.1080/23802359.2020.1774436]33457783
2020Rivera-Mendoza, Daniel, Martinez-Flores, Irma, Santamaria, Rosa I., Lozano, Luis, Bustamante, Victor H., Perez-Morales, Deyanira. (2020). "Genomic Analysis Reveals the Genetic Determinants Associated With Antibiotic Resistance in the Zoonotic Pathogen Campylobacter spp. Distributed Globally". Frontiers in Microbiology. 11():-. [doi:10.3389/fmicb.2020.513070]33042043
2020López-Leal, G., Santamaria, R.I., Cevallos, M.Á., Gonzalez, V., Castillo-Ramírez, S.. (2020). "Letter to the Editor: Prophages Encode Antibiotic Resistance Genes in Acinetobacter baumannii .". MICROBIAL DRUG RESISTANCE. 26(10):1275-1277. [doi:10.1089/mdr.2019.0362]32109174
2020Mancilla-Rojano, J., Ochoa, S.A., Reyes-Grajeda, J.P., Flores, V., Medina-Contreras, O., Espinosa-Mazariego, K., Parra-Ortega, I., Rosa-Zamboni, D.D.L., Castellanos-Cruz, M.d.C., Arellano-Galindo, J., Cevallos, M.A., Hernández-Castro, R., Xicohtencatl-Cortes, J., Cruz-Córdova, A.. (2020). "Molecular Epidemiology of Acinetobacter calcoaceticus - Acinetobacter baumannii Complex Isolated From Children at the Hospital Infantil de México Federico Gómez.". Frontiers in Microbiology. 11():-. [doi:10.3389/fmicb.2020.576673]33178158
2020Graña-Miraglia, L., Evans, B.A., López-Jácome, L.E., Hernández-Durán, M., Colín-Castro, C.A., Volkow-Fernández, P., Cevallos, M.A., Franco-Cendejas, R., Castillo-Ramírez, S.. (2020). "Origin of OXA-23 variant OXA-239 from a recently emerged lineage of Acinetobacter baumannii international clone V". mSphere. 5(1):-. [doi:10.1128/mSphere.0801-19]31915222
2020Bello-López, E., Rocha-Gracia, R.d.C., Castro-Jaimes, S., Cevallos, M.Á., Vargas-Cruz, M., Verdugo-Yocupicio, R., Sáenz, Y., Torres, C., Gutiérrez-Cázarez, Z., Arenas-Hernández, M.M.d.l.P., Lozano-Zarain, P.. (2020). "Antibiotic resistance mechanisms in Acinetobacter spp. strains isolated from patients in a paediatric hospital in Mexico.". J GLOB ANTIMICROB RE. 23():120-129. [doi:10.1016/j.jgar.2020.08.014]32916332
2020Margos, G., Castillo-Ramirez, S., Cutler, S., Dessau, R.B., Eikeland, R., Estrada-Peña, A., Gofton, A., Graña-Miraglia, L., Hunfeld, K.P., Krause, A., Lienhard, R., Lindgren, P.E., Oskam, C., Rudolf, I., Schwartz, I., Sing, A., Stevenson, B., Wormser, G.P., Fingerle, V.. (2020). "Rejection of the name Borreliella and all proposed species comb. nov. placed therein". International Journal Of Systematic And Evolutionary Microbiology. 70(5):3577-3581. [doi:10.1099/ijsem.0.004149]32320380
2020Balderas-Ruíz, K.A., Bustos, P., Santamaria, R.I., González, V., Cristiano-Fajardo, S.A., Barrera-Ortíz, S., Mezo-Villalobos, M., Aranda-Ocampo, S., Guevara-García, Á.A., Galindo, E., Serrano-Carreón, L.. (2020). "Bacillus velezensis 83 a bacterial strain from mango phyllosphere, useful for biological control and plant growth promotion". AMB Express. 10(1):-. [doi:10.1186/s13568-020-01101-8]32894363
2020Graña-Miraglia, L., Sikutova, S., Vancová, M., Bílý, T., Fingerle, V., Sing, A., Castillo-Ramírez, S., Margos, G., Rudolf, I.. (2020). "Spirochetes isolated from arthropods constitute a novel genus Entomospira genus novum within the order Spirochaetales". SCIENTIFIC REPORTS. 10(1):-. [doi:10.1038/s41598-020-74033-9]33051478
2019Cabrera-Contreras R, Santamaría RI, Bustos P, Martínez-Flores I, Meléndez-Herrada E, Morelos-Ramírez R, Barbosa-Amezcua M, González-Covarrubias V, Silva-Herzog E, Soberón X, González V. (2019). "Genomic diversity of prevalent Staphylococcus epidermidis multidrug-resistant strains isolated from a Children's Hospital in México City in an eight-years survey.". Peerj. 7():-. [doi:10.7717/peerj.8068]31768302
2019Mateo-Estrada, Valeria, Grana-Miraglia, Lucia, Lopez-Leal, Gamaliel, Castillo-Ramirez, Santiago. (2019). "Phylogenomics Reveals Clear Cases of Misclassification and Genus-Wide Phylogenetic Markers for Acinetobacter.". Genome Biology And Evolution. 11(9):2531-2541. [doi:10.1093/gbe/evz178]31406982
2019Cevallos, Miguel A., Guerrero, Gabriela, Rios, Selma, Arroyo, Analilia, Angel Villalobos, Miguel, Porta, Helena. (2019). "The chloroplast genome of the desiccation-tolerant moss Pseudocrossidium replicatum (Taylor) R.H. Zander.". GENETICS AND MOLECULAR BIOLOGY. 42(2):488-493. [doi:10.1590/1678-4685-GMB-2018-0184]31323081
2019Gonzalez, Victor, Isela Santamaria, Rosa, Bustos, Patricia, Maria Perez-Carrascal, Olga, Vinuesa, Pablo, Juarez, Soledad, Martinez-Flores, Irma, Angel Cevallos, Miguel, Brom, Susana, Martinez-Romero, Esperanza, Romero, David. (2019). "Phylogenomic Rhizobium Species Are Structured by a Continuum of Diversity and Genomic Clusters". Frontiers in Microbiology. 10():-. [doi:10.3389/fmicb.2019.00910]31114559
2019Mancilla-Rojano, J., Castro-Jaimes, S., Ochoa, S.A., Del Valle, M.B., Luna-Pineda, V.M., Bustos, P., Laris-González, A., Arellano-Galindo, J., Parra-Ortega, I., Hernández-Castro, R., Cevallos, M.A., Xicohtencatl-Cortes, J., Cruz-Córdova, A.. (2019). "Whole-Genome Sequences of Five Acinetobacter baumannii Strains From a Child With Leukemia M2.". Frontiers in Microbiology. 10():-. [doi:10.3389/fmicb.2019.00132]30787915
2019Bello-Lopez, Elena, Castro-Jaimes, Semiramis, Angel Cevallos, Miguel, del Carmen Rocha-Gracia, Rosa, Castaneda-Lucio, Miguel, Saenz, Yolanda, Torres, Carmen, Gutierrez-Cazares, Zita, Martinez-Laguna, Ygnacio, Lozano-Zarain, Patricia. (2019). "Resistome and a Novel bla(NDM-1)-Harboring Plasmid of an Acinetobacter haemolyticus Strain from a Children's Hospital in Puebla, Mexico". MICROBIAL DRUG RESISTANCE. 25(7):1023-1031. [doi:10.1089/mdr.2019.0034]31335270
2019Elufisan, T.O., Lozano, L., Bustos, P., Rodríguez-Luna, I.C., Sánchez-Varela, A., Oyedara, O.O., Villalobos-López, M.Á., Guo, X.. (2019). "Complete Genome Sequence of Stenotrophomonas maltophilia Strain SVIA2, Isolated from Crude Oil-Contaminated Soil in Tabasco, Mexico.". Microbiology Resource Announcements. 8(30):-. [doi:10.1128/MRA.00529-19]31346014
2019Carreón-Rodríguez, O.E., Gutiérrez-Ríos, R.M., Acosta, J.L., Martinez, A., Cevallos, M.A.. (2019). "Phenotypic and genomic analysis of Zymomonas mobilis ZM4 mutants with enhanced ethanol tolerance.". Biotechnology Reports. 23():-. [doi:10.1016/j.btre.2019.e00328]30984572
2019Lopez-Leal, Gamaliel, Cesar Zuniga-Moya, Julio, Castro-Jaimes, Semiramis, Grana-Miraglia, Lucia, Perez-Oseguera, Angeles, Sarahi Reyes-Garcia, Hilda, David Gough-Coto, Simmons, Pavon-Madrid, Rene, Aurora Bejarano, Suyapa, Ferrera, Annabelle, Castillo-Ramirez, Santiago, Cevallos, Miguel A.. (2019). "Unexplored Genetic Diversity of Multidrug- and Extremely Drug-Resistant Acinetobacter baumannii Isolates from Tertiary Hospitals in Honduras". MICROBIAL DRUG RESISTANCE. 25(5):690-695. [doi:10.1089/mdr.2018.0311]30614762
2018Graña-Miraglia, L., Arreguín-Pérez, C., López-Leal, G., Muñoz, A., Pérez-Oseguera, A., Miranda-Miranda, E., Cossío-Bayúgar, R., Castillo-Ramírez, S.. (2018). "Phylogenomics picks out the par excellence markers for species phylogeny in the genus Staphylococcus". Peerj. 2018(10):-. [doi:10.7717/peerj.5839]30386709
2018Challagundla, Lavanya, Reyes, Jinnethe, Rafiqullah, Iftekhar, Sordelli, Daniel O., Echaniz-Aviles, Gabriela, Velazquez-Meza, Maria E., Castillo-Ramirez, Santiago, Fittipaldi, Nahuel, Feldgarden, Michael, Chapman, Sinead B., Calderwood, Michael S., Carvajal, Lina P., Rincon, Sandra, Hanson, Blake, Planet, Paul J., Arias, Cesar A., Diaz, Lorena, Robinson, D. Ashley. (2018). "Phylogenomic classification and the evolution of Clonal complex 5 methicillin-resistant Staphylococcus aureus in the Western Hemisphere". Frontiers in Microbiology. 9():-. [doi:10.3389/fmicb.2018.01901]30186248
2018Frisch MB, Castillo-Ramirez S, Petit RA 3rd, Farley MM, Ray SM, Albrecht VS, Limbago BM, Hernandez J, See I, Satola SW, Read TD. (2018). "Invasive methicillin-resistant Staphylococcus aureus USA500 strains from the U.S. Emerging Infections Program constitute three geographically distinct lineages". mSphere. 3(3):-. [doi:10.1128/mSphere.00571-17]29720528
2018Stefan, A., Van Cauwenberghe, J., Rosu, C.M., Stedel, C., Labrou, N.E., Flemetakis, E., Efrose, R.C.. (2018). "Genetic diversity and structure of Rhizobium leguminosarum populations associated with clover plants are influenced by local environmental variables". Systematic And Applied Microbiology. 41(3):251-259. [doi:10.1016/j.syapm.2018.01.007]29452714
2018Salgado, H., Martínez-Flores, I., Bustamante, V.H., Alquicira-Hernández, K., García-Sotelo, J.S., García-Alonso, D., Collado-Vides, J.. (2018). "Using RegulonDB, the Escherichia coli K-12 Gene Regulatory Transcriptional Network Database.". Current Protocols in Bioinformatics. 61(1):1321-13230. [doi:10.1002/cpbi.43]30040192
2018Mendoza-Hoffmann, F., Pérez-Oseguera, Á., Cevallos, M.Á., Zarco-Zavala, M., Ortega, R., Peña-Segura, C., Espinoza-Simón, E., Uribe-Carvajal, S., García-Trejo, J.J.. (2018). "The Biological Role of the zeta Subunit as Unidirectional Inhibitor of the F1FO-ATPase of Paracoccus denitrificans". CELL REPORTS. 22(4):1067-1078. [doi:10.1016/j.celrep.2017.12.106]29386127
2018Julieta Solis-Gonzalez, Claudia, Dominguez-Malfavon, Lilianha, Vargas-Suarez, Martin, Gaytan, Itzel, Angel Cevallos, Miguel, Lozano, Luis, Javier Cruz-Gomez, M., Loza-Tavera, Herminia. (2018). "Novel metabolic pathway for N-methylpyrrolidone degradation in Alicycliphilus sp. strain BQ1". Applied And Environmental Microbiology. 84(1):-. [doi:10.1128/AEM.02136-17]29030443
2017Osorio A, Camarena L, Cevallos MA, Poggio S. (2017). "A New Essential Cell Division Protein in Caulobacter Crescentus". Journal Of Bacteriology. 199(8):-. [doi:10.1128/JB.00811-16]28167520
2017Romero-Gutierrez, Teresa, Peguero-Sanchez, Esteban, Cevallos, Miguel A., Batista, Cesar V. F., Ortiz, Ernesto, Possani, Lourival D.. (2017). "A Deeper Examination of Thorellius Atrox Scorpion Venom Components with Omic Techonologies". Toxins. 9(12):-. [doi:10.3390/toxins9120399]29231872
2017Olvera, C., Santamaría, R.I., Bustos, P., Vallejo, C., Montor, J.J., Wacher, C., Munguia, A.L.. (2017). "Draft genome sequence of Leuconostoc citreum CW28 isolated from pozol, a pre-Hispanic fermented corn beverage". Microbiology Resource Announcements. 5(48):-. [doi:10.1128/genomeA.01283-17]29192074
2017Graña-Miraglia L, Lozano LF, Velázquez C, Volkow-Fernández P, Pérez-Oseguera Á, Cevallos MA, Castillo-Ramírez S. (2017). "Rapid gene turnover as a significant source of genetic variation in a recently seeded population of a healthcare-associated pathogen". Frontiers in Microbiology. 8(SEP):1817-1817. [doi:10.3389/fmicb.2017.01817]28979253
2017Pérez-Oseguera Á, Castro-Jaimes S, Salgado-Camargo AD, Silva-Sanchez J, Garza-González E, Castillo-Ramírez S, Cevallos MÁ. (2017). "Complete genome sequence of a blaOXA-58-producing Acinetobacter baumannii strain isolated from a Mexican hospital". Microbiology Resource Announcements. 5(36):-. [doi:10.1128/genomeA.00949-17]28883144
2017Perez-Morales, Deyanira, Banda, Maria M., Elizabeth Chau, N. Y., Salgado, Heladia, Martinez-Flores, Irma, Antonio Ibarra, J., Ilyas, Bushra, Coombes, Brian K., Bustamante, Victor H.. (2017). "The transcriptional regulator SsrB is involved in a molecular switch controlling virulence lifestyles of Salmonella". PLOS PATHOGENS. 13(7):-. [doi:10.1371/journal.ppat.1006497]28704543
2017Sigala, J.C., Suárez, B.P., Lara, A.R., Borgne, S.L., Bustos, P., Santamaría, R.I., González, V., Martinez, A.. (2017). "Genomic and physiological characterization of a laboratory-isolated Acinetobacter Schindleri ACE strain that quickly and efficiently catabolizes acetate". MICROBIOLOGY-SGM. 163(7):1052-1064. [doi:10.1099/mic.0.000488]28671531
2017Santamaría, R.I., Bustos, P., Pérez-Carrascal, O.M., Miranda-Sánchez, F., Vinuesa, P., Martínez-Flores, I., Juárez, S., Lozano, L., Martínez-Romero, E., Cevallos, M.Á., Romero, D., Dávila, G., Ormeño-Orrillo, E., González, V.. (2017). "Complete Genome Sequences of Eight Rhizobium Symbionts Associated with Common Bean ( Phaseolus vulgaris ).". Genome Announcements. 5(30):-. [doi:10.1128/genomeA.00645-17]28751391
2017Bustos, P., Santamaría, R.I., Pérez-Carrascal, O.M., Acosta, J.L., Lozano, L., Juárez, S., Martínez-Flores, I., Martínez-Romero, E., Cevallos, M.Á., Romero, D., Dávila, G., Vinuesa, P., Miranda, F., Ormeño, E., González, V.. (2017). "Complete Genome Sequences of Three Rhizobium gallicum Symbionts Associated with Common Bean ( Phaseolus vulgaris ).". Genome Announcements. 5(11):-. [doi:10.1128/genomeA.00030-17]28302777
2017Saldaña-Ahuactzi Z., Cruz-Córdova A., Rodea G.E., Porta H., Navarro-Ocaña A., Eslava-Campos C., Cevallos M.A., Xicohtencatl-Cortes J.. (2017). "Genome sequence of enterotoxigenic Escherichia coli strain FMU073332". Microbiology Resource Announcements. 5(8):-. [doi:10.1128/genomeA.01600-16]28232434
2017Angel Vences-Guzman, Miguel, Goetting-Minesky, M. Paula, Guan, Ziqiang, Castillo-Ramirez, Santiago, America Cordoba-Castro, Luz, Lopez-Lara, Isabel M., Geiger, Otto, Sohlenkamp, Christian, Fenno, J. Christopher. (2017). "1,2-Diacylglycerol choline phosphotransferase catalyzes the final step in the unique Treponema denticola phosphatidylcholine biosynthesis pathway". Molecular Microbiology. 103(5):896-912. [doi:10.1111/mmi.13596]28009086
2017Alatorre-Fernandez, Pamela, Mayoral-Teran, Claudia, Velazquez-Acosta, Consuelo, Franco-Rodriguez, Cecilia, Flores-Moreno, Karen, Angel Cevallos, Miguel, Lopez-Vidal, Yolanda, Volkow-Fernandez, Patricia. (2017). "A polyclonal outbreak of bloodstream infections by Enterococcus faecium in patients with hematologic malignancies". American Journal of Infection Control. 45(3):260-266. [doi:10.1016/j.ajic.2016.10.002]27852447
2016Tamayo-Legorreta, Elsa, Turrubiartes-Martinez, Edgar, Garza-Ramos, Ulises, Nino-Moreno, Perla, Barrios, Humberto, Sanchez-Perez, Alejandro, Reyna-Flores, Fernando, Tovar-Oviedo, Juana, Magana-Aquino, Martin, Angel Cevallos, Miguel, Silva-Sanchez, Jesus. (2016). "Outbreak Caused by bla(OXA-72)-Producing Acinetobacter baumannii ST417 Detected in Clinical and Environmental Isolates". MICROBIAL DRUG RESISTANCE. 22(2):129-133. [doi:10.1089/mdr.2015.0157]26954369
2016Gama-Castro, S., Salgado, H., Santos-Zavaleta, A., Ledezma-Tejeida, D., Muñiz-Rascado, L., García-Sotelo, J.S., Alquicira-Hernández, K., Martínez-Flores, I., Pannier, L., Castro-Mondragón, J.A., Medina-Rivera, A., Solano-Lira, H., Bonavides-Martínez, C., Pérez-Rueda, E., Alquicira-Hernández, S., Porrón-Sotelo, L., López-Fuentes, A., Hernández-Koutoucheva, A., Del Moral-Chavez, V., Rinaldi, F., Collado-Vides, J.. (2016). "RegulonDB version 9.0: High-level integration of gene regulation, coexpression, motif clustering and beyond". Nucleic Acids Research. 44(D1):133-143. [doi:10.1093/nar/gkv1156]26527724
2016Mucito-Varela E., Castillo-Rojas G., Cevallos M.A., Lozano L., Merino E., L�pez-Leal G., L�pez-Vidal Y.. (2016). "Complete genome sequence of Helicobacter Pylori strain 7C isolated from a Mexican patient with chronic gastritis". Microbiology Resource Announcements. 4(1):-. [doi:10.1128/genomeA.01503-15]26744372
2016Graña-Miraglia L., Lozano L., Castro-Jaimes S., Cevallos M.A., Volkow P., Castillo-Ramírez S.. (2016). "First genome sequence of a mexican multidrug-resistant Acinetobacter baumannii isolate". Microbiology Resource Announcements. 4(2):-. [doi:10.1128/genomeA.00156-16]27013043
2016Castro-Jaimes S., Salgado-Camargo A.D., Gra�a-Miraglia L., Lozano L., Bocanegra-Ibarias P., Volkow-Fern�ndez P., Silva-Sanchez J., Castillo-Ram�rez S., Cevallos M.A.. (2016). "Complete genome sequence of a multidrug-resistant Acinetobacter baumannii isolate obtained from a Mexican hospital (sequence type 422)". Microbiology Resource Announcements. 4(3):-. [doi:10.1128/genomeA.00583-16]27340065
2016Castillo-Ramirez, S., Fingerle, V., Jungnick, S., Straubinger, R. K., Krebs, S., Blum, H., Meinel, D. M., Hofmann, H., Guertler, P., Sing, A., Margos, G.. (2016). "Trans-Atlantic exchanges have shaped the population structure of the Lyme disease agent Borrelia burgdorferi sensu stricto". SCIENTIFIC REPORTS. 6():22794-22794. [doi:10.1038/srep22794]26955886
2016Bolanos, Luis M., Rosenblueth, Monica, Castillo-Ramirez, Santiago, Figuier-Huttin, Gilles, Martinez-Romero, Esperanza. (2016). "Species-specific diversity of novel bacterial lineages and differential abundance of predicted pathways for toxic compound degradation in scorpion gut microbiota". Environmental Microbiology. 18(5):1364-1378. [doi:10.1111/1462-2920.12939]26058415
2016Martínez-Flores I, Pérez-Morales D, Sánchez-Pérez M, Paredes CC, Collado-Vides J, Salgado H, Bustamante VH. (2016). "In Silico clustering of Salmonella global gene expression data reveals novel genes co-regulated with the SPI-1 virulence genes through HilD". SCIENTIFIC REPORTS. 6():37858-37858. [doi:10.1038/srep37858]27886269
2016Joseph, Sandeep J., Cox, Daniel, Wolff, Bernard, Morrison, Shatavia S., Kozak-Muiznieks, Natalia A., Frace, Michael, Didelot, Xavier, Castillo-Ramirez, Santiago, Winchell, Jonas, Read, Timothy D., Dean, Deborah. (2016). "Dynamics of genome change among Legionella species". SCIENTIFIC REPORTS. 6():33442-33442. [doi:10.1038/srep33442]27633769
2016Becker, Noemie S., Margos, Gabriele, Blum, Helmut, Krebs, Stefan, Graf, Alexander, Lane, Robert S., Castillo-Ramirez, Santiago, Sing, Andreas, Fingerle, Volker. (2016). "Recurrent evolution of host and vector association in bacteria of the Borrelia burgdorferi sensu lato species complex". Bmc Genomics. 17(1):734-734. [doi:10.1186/s12864-016-3016-4]27632983
2016Perez Carrascal, Olga M., VanInsberghe, David, Juarez, Soledad, Polz, Martin F., Vinuesa, Pablo, Gonzalez, Victor. (2016). "Population genomics of the symbiotic plasmids of sympatric nitrogen-fixing Rhizobium species associated with Phaseolus vulgaris". Environmental Microbiology. 18(8):2660-2676. [doi:10.1111/1462-2920.13415]27312778
2016Garza-Ramos U, Silva-Sánchez J, Catalán-Nájera J, Barrios H, Rodríguez-Medina N, Garza-González E, Cevallos MA, Lozano L. (2016). "Draft genome sequence of a hypermucoviscous extended-spectrum-ß-lactamase-producing Klebsiella quasipneumoniae subsp. similipneumoniae clinical isolate". Microbiology Resource Announcements. 4(4):-. [doi:10.1128/genomeA.00475-16]27389261
2016Aanensen, David M., Feil, Edward J., Holden, Matthew T. G., Dordel, Janina, Yeats, Corin A., Fedosejev, Artemij, Goater, Richard, Castillo-Ramirez, Santiago, Corander, Jukka, Colijn, Caroline, Chlebowicz, Monika A., Schouls, Leo, Heck, Max, Pluister, Gerlinde, Ruimy, Raymond, Kahlmeter, Gunnar, Ahman, Jenny, Matuschek, Erika, Friedrich, Alexander W., Parkhill, Julian, Bentley, Stephen D., Spratt, Brian G., Grundmann, Hajo, ESCMID Study Grp Mol Epidemiologic, European Staphylococcal Ref Lab Wo. (2016). "Whole-genome sequencing for routine pathogen surveillance in public health: A population snapshot of invasive Staphylococcus aureus in Europe". Mbio. 7(3):-. [doi:10.1128/mBio.00444-16]27150362
2016Gonzalez-Villoria, Ana M., Tamayo-Legorreta, Elsa, Garza-Ramos, Ulises, Barrios, Humberto, Sanchez-Perez, Alejandro, Rodriguez-Medina, Nadia, Uribe-Avina, Naville, Cevallos, Miguel A., Silva-Sanchez, Jesus. (2016). "A Multicenter Study in Mexico Finds Acinetobacter baumannii Clinical Isolates Belonging to Clonal Complexes 636(B) (113(B)) and 92(B) Harboring OXA-72, OXA-239, and OXA-469". Antimicrobial Agents and Chemotherapy. 60(4):2587-2588. [doi:10.1128/AAC.02042-15]26833167
2016López-Leal G, Cevallos MA, Castillo-Ramírez S. (2016). "Evolution of a sigma factor: An All-In-One of Gene Duplication, Horizontal Gene Transfer, Purifying Selection, and Promoter Differentiation". Frontiers in Microbiology. 7(APR):581-581. [doi:10.3389/fmicb.2016.00581]27199915
2015Ormeño-Orrillo, E., Servín-Garcidueñas, L.E., Rogel, M.A., González Zúñiga, Víctor Manuel, Peralta, H., Mora, J., Martínez-Romero, J., Martinez-Romero, Esperanza. (2015). "Taxonomy of Rhizobia and agrobacteria from the Rhizobiaceae family in light of genomics". Systematic And Applied Microbiology. 38(4):287-291. [doi:10.1016/j.syapm.2014.12.002]25660942
2015Padilla, J.C.A., Bustos, P., Castro-Escarpulli, G., Sánchez-Varela, A., Palma-Martinez, I., Arzate-Barbosa, P., García-Pérez, C.A., López-López, M.d.J., González Zúñiga, Víctor Manuel, Guo, X.. (2015). "Draft genome sequence of Aeromonas caviae strain 429865 INP, isolated from a Mexican patient". Microbiology Resource Announcements. 3(5):-. [doi:10.1128/genomeA.01240-15]26494682
2015Lozano, Luis, Santamaria Gutiérrez, Rosa Isela, Bustos, P. (2015). "Genomic Tools for the Study of Azospirillum and Other Plant Growth-Promoting Rhizobacteria". Handbook for Azospirillum: Technical Issues and Protocols. ():83-97. [doi:10.1007/978-3-319-06542-7_5]
2015Joseph, S.J., Marti, H., Didelot, X., Castillo-Ramirez, S., Read, T.D., Dean, D.. (2015). "Chlamydiaceae genomics reveals interspecies admixture and the recent evolution of Chlamydia Abortus infecting lower mammalian species and humans". Genome Biology And Evolution. 7(11):3070-3084. [doi:10.1093/gbe/evv201]26507799
2015Rivera-Urbalejo, America, Perez-Oseguera, Angeles, Carreon-Rodriguez, Ofelia E., Cevallos, Miguel A.. (2015). "Mutations in an antisense RNA, involved in the replication control of a repABC plasmid, that disrupt plasmid incompatibility and mediate plasmid speciation". Plasmid. 78(SI):48-58. [doi:10.1016/j.plasmid.2015.01.004]25644116
2015Ezewudo, Matthew N., Joseph, Sandeep J., Castillo-Ramirez, Santiago, Dean, Deborah, del Rio, Carlos, Didelot, Xavier, Dillon, Jo-Anne, Selden, Richard F., Shafer, William M., Turingan, Rosemary S., Unemo, Magnus, Read, Timothy D.. (2015). "Population structure of Neisseria Gonorrhoeae based on whole genome data and its relationship with antibiotic resistance". Peerj. 2015(3):-. [doi:10.7717/peerj.806]25780762
2014Castillo-Ramirez, S., Feil, E.J.. (2014). "Towards a Synthesis of Population Genomics and Epidemiology: Next-Generation Sequencing of Bacterial Pathogens". Molecular Medical Microbiology: Second Edition. 1-3():337-345. [doi:10.1016/B978-0-12-397169-2.00018-4]
2014Rogel, M.A., Bustos, P., Santamaría, R.I., González Zúñiga, Víctor Manuel, Romero, D., Cevallos, M.T., Lozano, L., Castro-Mondragón, J., Martínez-Romero, J., Ormeño-Orrillo, E., Martinez-Romero, Esperanza. (2014). "Genomic basis of symbiovar mimosae in Rhizobium etli". Bmc Genomics. 15(1):575-575. [doi:10.1186/1471-2164-15-575]25005495
2014Santamaria Gutiérrez, Rosa Isela, Bustos Arcos, Virginia Patricia, Lozano Aguirre Beltrán, Luis Fernando, Rodríguez Sánchez, César, Fernandez Vázquez, José Luis, Juárez Ramírez, María Soledad, Kameyama, L., Guarneros, G., Dávila Ramos, José Guillermo, González Zúñiga, Víctor Manuel. (2014). "Narrow-Host-Range Bacteriophages That Infect Rhizobium etli Associate with Distinct Genomic Types". Applied And Environmental Microbiology. 80(2):446-454. [doi:10.1128/AEM.02256-13]24185856
2014Martinez, L.C., Martínez Flores, Irma, Salgado Osorio, Heladia, Fernández-Mora, M., Medina Rivera, Alejandra Eugenia, Puente, J.L., Collado Vides, Pedro Julio, Bustamante, V.H.. (2014). "In Silico identification and experimental characterization of regulatory elements controlling the expression of the Salmonella csrB and csrC genes". Journal Of Bacteriology. 196(2):325-336. [doi:10.1128/JB.00806-13]24187088
2014Alberto Batista-Garcia, Ramon, Sanchez-Reyes, Ayixon, Millan-Pacheco, Cesar, Manuel Gonzalez-Zuniga, Victor, Juarez, Soledad, Luis Folch-Mallol, Jorge, Pastor, Nina. (2014). "A novel TctA citrate transporter from an activated sludge metagenome: Structural and mechanistic predictions for the TTT family". Proteins-Structure Function And Bioinformatics. 82(9):1756-1764. [doi:10.1002/prot.24529]24493659
2014Lopez-Leal, Gamaliel, Luisa Tabche, Maria, Castillo-Ramirez, Santiago, Mendoza-Vargas, Alfredo, Ramirez-Romero, Miguel A., Davila, Guillermo. (2014). "RNA-Seq analysis of the multipartite genome of Rhizobium etli CE3 shows different replicon contributions under heat and saline shock". Bmc Genomics. 15(1):770-770. [doi:10.1186/1471-2164-15-770]25201548
2013Wiesner, Magdalena, Fernandez-Mora, Marcos, Cevallos, Miguel A., Zavala-Alvarado, Crispin, Zaidi, Mussaret B., Calva, Edmundo, Silva, Claudia. (2013). "Conjugative transfer of an IncA/C plasmid-borne bla(CMY-2) gene through genetic re-arrangements with an IncX1 plasmid". Bmc Microbiology. 13():264-264. [doi:10.1186/1471-2180-13-264]24262067
2013Pérez Oseguera, María de los Angeles, Cevallos Gaos, Miguel Ángel Carlos. (2013). "RepA and RepB exert plasmid incompatibility repressing the transcription of the repABC operon". Plasmid. 70(3):362-376. [doi:10.1016/j.plasmid.2013.08.001]24016735
2013Gerardo Trevino-Quintanilla, Luis, Augusto Freyre-Gonzalez, Julio, Martinez-Flores, Irma. (2013). "Anti-Sigma Factors in E-coli: Common Regulatory Mechanisms Controlling Sigma Factors Availability". Current Genomics. 14(6):378-387. [doi:10.2174/1389202911314060007]24396271
2013Tsai, I.J., Zarowiecki, M., Holroyd, N., Garciarrubio, A., Sánchez-Flores, A., Brooks, K.L., Tracey, A., Bobes, R.J., Fragoso, G., Sciutto, E., Aslett, M., Beasley, H., Bennett, H.M., Cai, J., Camicia, F., Clark, R., Cucher, M., De Silva, N., Day, T.A., Deplazes, P., Estrada, K., Fernández, C., Holland, P.W., Hou, J., Hu, S., Huckvale, T., Hung, S.S., Kamenetzky, L., Keane, J.A., Kiss, F., Koziol, U., Lambert, O., Liu, K., Luo, X., Luo, Y., Macchiaroli, N., Nichol, S., Paps, J., Parkinson, J., Pouchkina-Stantcheva, N., Riddiford, N., Rosenzvit, M., Salinas, G., Wasmuth, J.D., Zamanian, M., Zheng, Y., Garciarrubio, A., Bobes, R.J., Fragoso, G., Sánchez-Flores, A., Estrada, K., Cevallos Gaos, Miguel Ángel Carlos, Morett, E., González Zúñiga, Víctor Manuel, Portillo, T., Ochoa-Leyva, A., José, M.V., Sciutto, E., Landa, A., Jiménez, L., Valdés, V., Carrero, J.C., Larralde, C., Morales-Montor, J., Limón-Lason, J., Soberón, X., Laclette, J.P., Cai, X., Soberón, X., Olson, P.D., Laclette, J.P., Brehm, K., Berriman, M.. (2013). "The genomes of four tapeworm species reveal adaptations to parasitism". Nature. 496(7443):57-63. [doi:10.1038/nature12031]23485966
2013Salgado Osorio, Heladia, Peralta Gil, Martín, Gama Castro, Ma. del Socorro, Santos Zavaleta, Alberto, Muñíz Rascado, Luis José, Garcia Sotelo, Jair Santiago, Weiss, V., Solano Lira, Hilda, Martínez Flores, Irma, Medina Rivera, Alejandra Eugenia, Salgado Osorio, Gerardo, Alquicira Hernández, Shirley, Alquicira Hernández, Kevin, López Fuentes, Alejandra Cristina, Porrón Sotelo, Liliana, Huerta Moreno, Araceli, Bonavides Martínez, César Augusto, Balderas MartÍnez, Yalbi Itzel, Pannier, Lucia, Olvera, M., Labastida, A., Jiménez-Jacinto, V., Vega-Alvarado, L., del Moral Chávez, Victor Manuel, Hernández Álvarez, Alfredo José, Morett, E., Collado Vides, Pedro Julio. (2013). "RegulonDB v8.0: Omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more". Nucleic Acids Research. 41(D1):203-213. [doi:10.1093/nar/gks1201]23203884
2013Castillo-Ramírez, S., Feil, E.J.. (2013). "Population genetics". The Prokaryotes: Prokaryotic Biology And Symbiotic Associations. ():255-266. [doi:10.1007/978-3-642-30194-0_83]
2013Pérez Segura, Gabriela, Pérez Oseguera, María de los Angeles, Cevallos Gaos, Miguel Ángel Carlos. (2013). "The repAC replication system of the Rhizobium leguminosarum pRL7 plasmid is functional: Implications regarding the origin and evolution of repABC plasmids". Plasmid. 69(1):49-57. [doi:10.1016/j.plasmid.2012.08.003]22975386
2012Salgado Osorio, Heladia, Martínez Flores, Irma, López Fuentes, Alejandra Cristina, Garcia Sotelo, Jair Santiago, Porrón Sotelo, Liliana, Muñíz Rascado, Luis José, Collado Vides, Pedro Julio. (2012). "Extracting regulatory networks of Escherichia coli from RegulonDB". Methods in Molecular Biology. 804():179-195. [doi:10.1007/978-1-61779-361-5_10]22144154
2012Mavingui, P., Van, T.V., Wisniewski-Dye, F., Raquin, V., Minard, G., Tran, F.H., Voronin, D., Rouy, Z., Bustos Arcos, Virginia Patricia, Lozano Aguirre Beltrán, Luis Fernando, Barbe, V., González Zúñiga, Víctor Manuel. (2012). "Whole-genome sequence of Wolbachia strain wALbB, an endosymbiont of tiger mosquito vector Aedes albopictus". Journal Of Bacteriology. 194(7):1840-1840. [doi:10.1128/JB.00036-12]22408242
2012Garza-Ramos, U., Barrios, H., Hernández-Vargas, M.J., Rojas-Moreno, T., Reyna-Flores, F., Tinoco, P., Othon, V., Poirel, L., Nordmann, P., Cattoir, V., Ruíz-Palacios, G., Fernandez Vázquez, José Luis, Santamaria Gutiérrez, Rosa Isela, Bustos Arcos, Virginia Patricia, Castro, N., Silva-Sánchez, J.. (2012). "Transfer of quinolone resistance gene qnrA1 to Escherichia coli through a 50 kb conjugative plasmid resulting from the splitting of a 300 kb plasmid". Journal Of Antimicrobial Chemotherapy. 67(7):1627-1634. [doi:10.1093/jac/dks123]22514263
2012de la Rosa, J.J.P., Ureostegui, P.V., Martínez, J.A.A., Martínez, C.R., Zuniga, VMG, Millan, J.V.F.. (2012). "Babesia bigemina: Initial gene identification by Expressed Sequence Tags (EST) analysis of the intraerythrocytic stage". REVISTA MEXICANA DE CIENCIAS PECUARIAS. 3(1):61-87.
2012Fernández-Sandoval, M.T., Huerta-Beristain, G., Trujillo-Martínez, B., Bustos Arcos, Virginia Patricia, González Zúñiga, Víctor Manuel, Bolivar, F., Gosset, G., Martínez, A.. (2012). "Laboratory metabolic evolution improves acetate tolerance and growth on acetate of ethanologenic Escherichia coli under non-aerated conditions in glucose-mineral medium". Applied Microbiology And Biotechnology. 96(5):1291-1300. [doi:10.1007/s00253-012-4177-y]22669633
2012Wisniewski-Dye, Florence, Lozano, Luis, Acosta-Cruz, Erika, Borland, Stephanie, Drogue, Benoit, Prigent-Combaret, Claire, Rouy, Zoe, Barbe, Valerie, Mendoza Herrera, Alberto, Gonzalez, Victor, Mavingui, Patrick. (2012). "Genome sequence of Azospirillum brasilense CBG497 and comparative analyses of Azospirillum core and accessory genomes provide insight into niche adaptation". Genes. 3(4):576-602. [doi:10.3390/genes3040576]24705077
2012Althabegoiti, M.J., Lozano Aguirre Beltrán, Luis Fernando, Torres-Tejerizo, G., Ormeño Orrillo, Ernesto Aldo, Rogel Hernández, Marco Antonio, González Zúñiga, Víctor Manuel, Martínez Romero, María Esperanza. (2012). "Genome sequence of Rhizobium Grahamii CCGE502, a broad-host-range symbiont with low nodulation competitiveness in Phaseolus vulgaris". Journal Of Bacteriology. 194(23):6651-6652. [doi:10.1128/JB.01785-12]23144400
2012López Guerrero, Martha Guadalupe, Ormeño Orrillo, Ernesto Aldo, Velázquez, E., Rogel Hernández, Marco Antonio, Centro de Ciencias Genómicas CCG, González Zúñiga, Víctor Manuel, Martínez Romero, Julio César, Martínez Romero, María Esperanza. (2012). "Rhizobium etli taxonomy revised with novel genomic data and analyses". Systematic And Applied Microbiology. 35(6):353-358. [doi:10.1016/j.syapm.2012.06.009]22858268
2012Tejerizo, G.T., Lozano, L, Gonzalez, V, Bustos, P, Romero, D, Brom, S. (2012). "Draft genome sequence of the bean-nodulating Sinorhizobium fredii strain GR64". Journal Of Bacteriology. 194(24):6978-6978. [doi:10.1128/JB.01882-12]23209231
2011Pappas, Katherine M., Cevallos, Miguel A.. (2011). "Plasmids of the Rhizobiaceae and Their Role in Interbacterial and Transkingdom Interactions". Biocommunication In Soil Microorganisms. 23():295-337. [doi:10.1007/978-3-642-14512-4_12]
2011Wisniewski-Dye, F., Borziak, K., Khalsa-Moyers, G., Alexandre, G., Sukharnikov, L.O., Wuichet, K., Hurst, G.B., McDonald, W.H., Robertson, J.S., Barbe, V., Calteau, A., Rouy, Z., Mangenot, S., Prigent-Combaret, C., Normand, P., Boyer, M., Siguier, P., Dessaux, Y., Elmerich, C., Condemine, G., Krishnen, G., Kennedy, I., Paterson, A.H., González Zúñiga, Víctor Manuel, Mavingui, P., Zhulin, I.B.. (2011). "Azospirillum genomes reveal transition of bacteria from aquatic to terrestrial environments". Plos Genetics. 7(12):-. [doi:10.1371/journal.pgen.1002430]22216014
2011Acosta, Jose L., Eguiarte, L.E., Santamaria Gutiérrez, Rosa Isela, Bustos Arcos, Virginia Patricia, Vinuesa P, Martínez Romero, María Esperanza, Dávila Ramos, José Guillermo, González Zúñiga, Víctor Manuel. (2011). "Genomic lineages of Rhizobium etli revealed by the extent of nucleotide polymorphisms and low recombination". Bmc Evolutionary Biology. 11(1):305-305. [doi:10.1186/1471-2148-11-305]22004448
2011Orduña, P., Cevallos Gaos, Miguel Ángel Carlos, De León, S.P., Arvizu, A., Hernández González, Ismael Luis, Mendoza-Hernández, G., López-Vidal, Y.. (2011). "Genomic and proteomic analyses of Mycobacterium Bovis BCG Mexico 1931 reveal a diverse immunogenic repertoire against tuberculosis infection". Bmc Genomics. 12():493-493. [doi:10.1186/1471-2164-12-493]21981907
2011Cervantes Rivera, Ramón, Pedraza López, Francisco, Pérez Segura, Gabriela, Cevallos Gaos, Miguel Ángel Carlos. (2011). "The replication origin of a repABC plasmid". Bmc Microbiology. 11():158-158. [doi:10.1186/1471-2180-11-158]21718544
2011Cervantes de la Luz, Laura, Bustos Arcos, Virginia Patricia, Girard Cuesy, María de Lourdes, Santamaria Gutiérrez, Rosa Isela, Dávila Ramos, José Guillermo, Vinuesa Fleischmann, Pablo, Romero Camarena, David René, Brom Klanner, Susana. (2011). "The conjugative plasmid of a bean-nodulating Sinorhizobium fredii strain is assembled from sequences of two Rhizobium plasmids and the chromosome of a Sinorhizobium strain". Bmc Microbiology. 11(1):1-11. [doi:10.1186/1471-2180-11-149]21702991
2011Landeta Escamilla, Cristina, Dávalos Rodríguez, Araceli Elvira, Cevallos Gaos, Miguel Ángel Carlos, Geiger, Otto, Brom Klanner, Susana, Romero Camarena, David René. (2011). "Plasmids with a chromosome-like role in Rhizobia". Journal Of Bacteriology. 193(6):1317-1326. [doi:10.1128/JB.01184-10]21217003
2011Wiesner, M., Calva, E., Fernandez-Mora, M., Cevallos Gaos, Miguel Ángel Carlos, Campos, F., Zaidi, M.B., silva, C.. (2011). "Salmonella Typhimurium ST213 is associated with two types of IncA/C plasmids carrying multiple resistance determinants". Bmc Microbiology. 11(1):9-9. [doi:10.1186/1471-2180-11-9]21223599
2011Gama Castro, Ma. del Socorro, Salgado Osorio, Heladia, Peralta Gil, Martín, Santos Zavaleta, Alberto, Muñíz Rascado, Luis José, Solano Lira, Hilda, Jimenez-Jacinto, V., Weiss, V., Garcia Sotelo, Jair Santiago, López Fuentes, Alejandra Cristina, Porrón Sotelo, Liliana, Alquicira Hernández, Shirley, Medina Rivera, Alejandra Eugenia, Martínez Flores, Irma, Alquicira Hernández, Kevin, Martínez Adame, Ruth, Bonavides Martínez, César Augusto, Miranda-Ríos, J., Huerta Moreno, Araceli, Mendoza-Vargas, A., Collado Torres, Leonardo, Taboada, B., Vega-Alvarado, L., Olvera, M., Olvera, L., Grande, R., Morett, E., Collado Vides, Pedro Julio. (2011). "RegulonDB version 7.0: Transcriptional regulation of Escherichia coli K-12 integrated within genetic sensory response units (Gensor Units)". Nucleic Acids Research. 39(SUPPL. 1):98-105. [doi:10.1093/nar/gkq1110]21051347
2011Salgado Osorio, Heladia, Martínez Flores, Irma, López Fuentes, Alejandra Cristina, Garcia Sotelo, Jair Santiago, Porrón Sotelo, Liliana, Muñíz Rascado, Luis José, Collado Vides, Pedro Julio. (2011). "Extracting regulatory networks of/Escherichia coli/from RegulonDB". Bacterial Molecular Networks: Methods and Protocols. ():-.
2010Lozano Aguirre Beltrán, Luis Fernando, Hernández González, Ismael Luis, Bustos Arcos, Virginia Patricia, Santamaria Gutiérrez, Rosa Isela, Souza, V., Young, J.P.W, Dávila Ramos, José Guillermo, González Zúñiga, Víctor Manuel. (2010). "Evolutionary dynamics of insertion sequences in relation to the evolutionary histories of the chromosome and symbiotic plasmid genes of Rhizobium etli populations". Applied And Environmental Microbiology. 76(19):6504-6513. [doi:10.1128/AEM.01001-10]20675442
2010Gonzalez, Vctor, Acosta, Jose L., Santamaria, Rosa I., Bustos, Patricia, Fernandez, Jose L., Hernandez Gonzalez, Ismael L., Diaz, Rafael, Flores, Margarita, Palacios, Rafael, Mora, Jaime, Davila, Guillermo. (2010). "Conserved symbiotic plasmid DNA sequences in the multireplicon pangenomic structure of Rhizobium etli". Applied And Environmental Microbiology. 76(5):1604-1614. [doi:10.1128/AEM.02039-09]20048063
2010Demir, E., Cary, M.P., Paley, S., Fukuda, K., Lemer, C., Vastrik, I., Wu, G.N., D Eustachio, P., Schaefer, C., Luciano, J., Schacherer, F., Martínez Flores, Irma, Hu, Z.J., Jiménez-Jacinto, V., Joshi-Tope, G., Kandasamy, K., López-Fuentes, A.C., Mi, H.Y., Pichler, E., Rodchenkov, I., Splendiani, A., Tkachev, S., Zucker, J., Gopinath, G., Rajasimha, H., Ramakrishnan, R., Shah, I., Syed, M., Anwar, N., Babur, O., Blinov, M., Brauner, E., Corwin, D., Donaldson, S., Gibbons, F., Goldberg, R., Hornbeck, P., Luna, A., Murray-Rust, P., Neumann, E., Reubenacker, O., Samwald, M., van Iersel, M., Wimalaratne, S., Allen, K., Braun, B., Whirl-Carrillo, M., Cheung, K.H., Dahlquist, K., Finney, A., Gillespie, M., Glass, E., Gong, L., Haw, R., Honig, M., Hubaut, O., Kane, D., Krupa, S., Kutmon, M., Leonard, J., Marks, D., Merberg, D., Petri, V., Pico, A., Ravenscroft, D., Ren L.Y., Shah, N., Sunshine, M., Tang, R., Whaley, R., Letovksy, S., Buetow, K.H., Rzhetsky, A., Schachter, V., Sobral, B., Dogrusoz, U., McWeeney, S., Aladjem, M., Birney, E., Collado Vides, Pedro Julio, Goto, S., Hucka, M., Le Novere, N., Maltsev, N., Pandey, A., Thomas, P., Wingender, E., Karp, P.D., Sander, C., Bader, G.D.. (2010). "The BioPAX community standard for pathway data sharing". Nature Biotechnology. 28(9):935-942. [doi:10.1038/nbt.1666]20829833
2010Salgado Osorio, Heladia, López Fuentes, Alejandra Cristina, Martínez Flores, Irma, Garcia Sotelo, Jair Santiago, Porrón Sotelo, Liliana, Solano Lira, Hilda, Muñíz Rascado, Luis José, Collado Vides, Pedro Julio. (2010). "Extracting regulatory networks of Escherichia coli from RegulonDB". Bacterial Molecular Networks: Methods and Protocols. ():-.
2010Martínez Flores, Irma, Jiménez-Jacinto, V., López Fuentes, Alejandra Cristina, Collado Vides, Pedro Julio. (2010). "Expanding BioPAX format by integrating Gene Regulation". EMBnet.journal. 16():39-43.
2010Cervantes-Rivera, Ramon, Romero-Lopez, Cristina, Berzal-Herranz, Alfredo, Cevallos, Miguel A.. (2010). "Analysis of the Mechanism of Action of the Antisense RNA That Controls the Replication of the repABC Plasmid p42d". Journal Of Bacteriology. 192(13):3268-3278. [doi:10.1128/JB.00118-10]20435728
2009Martinez-Salazar, Jaime M., Sandoval-Calderon, Mario, Guo, Xianwu, Castillo-Ramirez, Santiago, Reyes, Alma, Loza, Maria G., Rivera, Javier, Alvarado-Affantranger, Xochitl, Sanchez, Federico, Gonzalez, Victor, Davila, Guillermo, Ramirez-Romero, Miguel A.. (2009). "The Rhizobium etli RpoH1 and RpoH2 sigma factors are involved in different stress responses". MICROBIOLOGY-SGM. 155(2):386-397. [doi:10.1099/mic.0.021428-0]19202087
2009Collado-Vides, Julio, Salgado, Heladia, Morett, Enrique, Gama-Castro, Socorro, Jimenez-Jacinto, Veronica, Martinez-Flores, Irma, Medina-Rivera, Alejandra, Muniz-Rascado, Luis, Peralta-Gil, Martin, Santos-Zavaleta, Alberto. (2009). "Bioinformatics resources for the study of gene regulation in bacteria". Journal Of Bacteriology. 91(1):23-31. [doi:10.1128/JB.01017-08]18978060
2009Morett, Enrique, Garciarubio, A., Bobes, R. J., Carrero, J. C., Cevallos, M. A., Fragoso, G., Gaytan, P., Gonzalez, V. M., Jose, M. V., Jimenez, L., Landa, A., Larralde, C., Morales-Montor, J., Sciutto, E., Soberon, X., de la Torre, P., Valdes, V., Yanez, J., Laclette, J. P.. (2009). "The Genome Project of Taenia solium". Infection Genetics And Evolution. 9(3):368-369.
2009Garza-Ramos, U., Davila, G., Gonzalez, V., Alpuche-Aranda, C., Lopez-Collada, V. R., Alcantar-Curiel, D., Newton, O., Silva-Sanchez, J.. (2009). "The blaSHV-5gene is encoded in a compound transposon duplicated in tandem in Enterobacter Cloacae". Clinical Microbiology And Infection. 15(9):878-880. [doi:10.1111/j.1469-0691.2009.02790.x]19519856
2009Castillo-Ramirez, Santiago, Vazquez-Castellanos, Jorge F., Gonzalez, Victor, Cevallos, Miguel A.. (2009). "Horizontal gene transfer and diverse functional constrains within a common replication-partitioning system in Alphaproteobacteria: The repABC operon". Bmc Genomics. 10():536-536. [doi:10.1186/1471-2164-10-536]19919719
2008Garciarrubio, A., Bobes, R. J., Carrero, J. C., Cevallos, M. A., Fragoso, G., Gonzalez, V. M., Jose, M. V., Landa, A., Larralde, C., Mendoza, L., Morales-Montor, J., Morett, E., Sciutto, E., Soberon, X., Laclette, J. P.. (2008). "The Genome Project of Taenia solium". International Journal Of Infectious Diseases. 12():395-395. [doi:10.1016/j.ijid.2008.05.1042]
2008Castillo-Ramirez, Santiago, Gonzalez, Victor. (2008). "Factors affecting the concordance between orthologous gene trees and species tree in bacteria". Bmc Evolutionary Biology. 8(1):300-300. [doi:10.1186/1471-2148-8-300]18973688
2008Crossman, Lisa C., Castillo-Ramirez, Santiago, McAnnula, Craig, Lozano, Luis, Vernikos, Georgios S., Acosta, Jose L., Ghazoui, Zara F., Hernandez-Gonzalez, Ismael, Meakin, Georgina, Walker, Alan W., Hynes, Michael F., Young, J. Peter W., Downie, J. Allan, Romero, David, Johnston, Andrew W. B., Davila, Guillermo, Parkhill, Julian, Gonzalez, Victor. (2008). "A common genomic framework for a diverse assembly of plasmids in the symbiotic nitrogen fixing bacteria". Plos One. 3(7):-. [doi:10.1371/journal.pone.0002567]18596979
2008Cevallos, Miguel A., Cervantes-Rivera, Ramon, Gutierrez-Rios, Rosa Maria. (2008). "The repABC plasmid family". Plasmid. 60(1):19-37. [doi:10.1016/j.plasmid.2008.03.001]18433868
2008Suarez, Ramon, Wong, Arnoldo, Ramirez, Mario, Barraza, Aaron, Orozco, Maria del Carmen, Cevallos, Miguel A., Lara, Miguel, Hernandez, Georgina, Iturriaga, Gabriel. (2008). "Improvement of drought tolerance and grain yield in common bean by overexpressing trehalose-6-phosphate synthase in Rhizobia". Molecular Plant-Microbe Interactions. 21(7):958-966. [doi:10.1094/MPMI-21-7-0958]18533836
2008González Zúñiga, Víctor Manuel, Luis Lozano, Santiago Castillo-Ramírez, Hernández González, Ismael Luis, Bustos Arcos, Virginia Patricia, Santamaria Gutiérrez, Rosa Isela, Fernandez Vázquez, José Luis, Centro de Ciencias Genómicas CCG, Dávila Ramos, José Guillermo. (2008). "Evolutionary Genomics of the Nitrogen Fixing Symbiotic Bacteria". Molecular Mechanisms of Plant-Microbe Coexistance Soil Biology Series. 15(0):183-198.
2008Gama Castro, Ma. del Socorro, Jiménez Jacinto, Verónica, Peralta Gil, Martín, Santos Zavaleta, Alberto, Peñaloza Spinola, Mónica Ivonne, Contreras Moreira, Bruno, Segura Salazar, Juan, Muñíz Rascado, Luis José, Martínez Flores, Irma, Salgado Osorio, Heladia, Bonavides Martínez, César Augusto, Abreu Goodger, Cei Leander Gastón, Rodríguez Penagos, Carlos, Miranda-Ríos, J., Morett Sánchez, Juan Enrique, Merino, E., Huerta Moreno, Araceli, Treviño Quintanilla, Luis Gerardo, Collado Vides, Pedro Julio. (2008). "RegulonDB (version 6.0): Gene regulation model of Escherichia coli K-12 beyond transcription, active (experimental) annotated promoters and Textpresso navigation". Nucleic Acids Research. 36(SUPPL. 1):120-124. [doi:10.1093/nar/gkm994]18158297
2008Boyer, Mickael, Haurat, Jacqueline, Samain, Sylvie, Segurens, Beatrice, Gavory, Frederick, Gonzalez, Victor, Mavingui, Patrick, Rohr, Rene, Bally, Rene, Wisniewski-Dye, Florence. (2008). "Bacteriophage prevalence in the genus Azospirillum and analysis of the first genome sequence of an Azospirillum brasilense integrative phage". Applied And Environmental Microbiology. 74(3):861-874. [doi:10.1128/AEM.02099-07]18065619
2007Guo, Xianwu, Flores, Margarita, Morales, Lucia, Garcia, Delfino, Bustos, Patricia, Gonzalez, Victor, Palacios, Rafael, Davila, Guillermo. (2007). "DNA diversification in two Sinorhizobium species". Journal Of Bacteriology. 189(17):6474-6476. [doi:10.1128/JB.00384-07]17601787
2007Rodríguez Penagos, Carlos, Salgado Osorio, Heladia, Martínez Flores, Irma, Collado Vides, Pedro Julio. (2007). "Automatic reconstruction of a bacterial regulatory network using Natural Language Processing". Bmc Bioinformatics. 8():293-293. [doi:10.1186/1471-2105-8-293]17683642
2007Rodríguez-Penagos, C., Salgado, H., Martínez-Flores, I., Collado-Vides, J.. (2007). "NLP-based curation of bacterial regulatory networks". LECT NOTES COMPUT SC. 4394 LNCS():575-586. [doi:10.1007/978-3-540-70939-8_51]
2007Pinero, Silvia, Rivera, Javier, Romero, David, Cevallos, Miguel Angel, Martinez, Alfredo, Bolivar, Francisco, Gosset, Guillermo. (2007). "Tyrosinase from Rhizobium etli is involved in nodulation efficiency and symbiosis-associated stress resistance". JOURNAL OF MOLECULAR MICROBIOLOGY AND BIOTECHNOLOGY. 13(1-3):35-44. [doi:10.1159/000103595]17693711
2007Guo, Xianwu, Castillo-Ramirez, Santiago, Gonzalez, Victor, Bustos, Patricia, Fernandez-Vazquez, Jose Luis, Santamaria, Rosa Isela, Arellano, Jesus, Cevallos, Miguel A., Davila, Guillermo. (2007). "Rapid evolutionary change of common bean (Phaseolus vulgaris L) plastome, and the genomic diversification of legume chloroplasts". Bmc Genomics. 8():228-228. [doi:10.1186/1471-2164-8-228]17623083
2007Flores López, Margarita, Morales Reyes, Lucía Guadalupe, Gonzaga Jáuregui, Claudia Gabriela, Domínguez Vidaña, Rocío, Zepeda Mendoza, Cinthya Jeanette, Yáñez Cuna, Jorge Omar, Gutiérrez Arcelus, María, Lemus Vergara, Tzitziki Janik, Valle García, David, Ávila Arcos, María del Carmen, Blanco Melo, Daniel, Medina Ruiz, Sofía, Meza Sosa, Karla Fabiola, Ayala Ortega, Erandi, García Alonso, Delfino, Bustos Arcos, Virginia Patricia, González Zúñiga, Víctor Manuel, Girard Cuesy, María de Lourdes, Tusie-Luna, T., Dávila Ramos, José Guillermo, Palacios de la Lama, Rafael. (2007). "Recurrent DNA inversion rearrangements in the human genome". PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 104(15):6099-6106. [doi:10.1073/pnas.0701631104]17389356
2007Cervantes, Ramon, Cevallos, Miguel A.. (2007). "Elements required to activate the origin of replication in a repABC plasmid.". Plasmid. 57(2):197-197.
2007Rodríguez Penagos, Carlos, Martínez Flores, Irma, Salgado Osorio, Heladia, Collado Vides, Pedro Julio. (2007). "NLP-based curation of bacterial regulatory networks". Computational Linguistics And Intelligent Text Processing. 4394():575-.
2007Rodríguez Penagos, Carlos, Salgado Osorio, Heladia, Martínez Flores, Irma, Collado Vides, Pedro Julio. (2007). "NLP-Based Curation of Bacterial Regulatory Networks". CICLing. ():575-586.
2006Alvarez, R.G., de Mendoza, A.R., Escobedo, D.E., Felix, G.C., Sanchez, I.R., González Zúñiga, Víctor Manuel, Dávila Ramos, José Guillermo, Cao, Q., de Jong, P., Fu, Y.X., Saldana, H.A.B.. (2006). "Growth hormone locus expands and diverges after the separation of New and Old World Monkeys". Gene. 380(1):38-45. [doi:10.1016/j.gene.2006.05.017]16872758
2006Peñaloza Spinola, Mónica Ivonne, Peralta Gil, Martín, Gama Castro, Ma. del Socorro, Contreras Moreira, Bruno, Santos Zavaleta, Alberto, Martínez Flores, Irma, Collado Vides, Pedro Julio. (2006). "RegulonDB: Going beyond transcriptional regulation". Proceedings Of The Fifth International Conference On Bioinformatics Of Genome Regulation And Structure, Vol 3. ():322-322.
2006Ramirez-Romero, MA, Masulis, I, Cevallos, MA, Gonzalez, V, Davila, G. (2006). "The Rhizobium etli s70 (SigA) factor recognizes a lax consensus promoter". Nucleic Acids Research. 34(5):1470-1480. [doi:10.1093/nar/gkl023]16528104
2006González Zúñiga, Víctor Manuel, Santamaria Gutiérrez, Rosa Isela, Bustos Arcos, Virginia Patricia, Hernández González, Ismael Luis, Medrano Soto, Luis Arturo, Moreno Hagelsieb, Gabriel, Janga, Sarath Chandra, Ramírez Romero, Miguel Ángel, Jiménez Jacinto, Verónica, Collado Vides, Pedro Julio, Dávila Ramos, José Guillermo. (2006). "The partitioned Rhizobium etli genome: Genetic and metabolic redundancy in seven interacting replicons". PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 103(10):3834-3839. [doi:10.1073/pnas.0508502103]16505379
2006Salgado Osorio, Heladia, Gama Castro, Ma. del Socorro, Peralta Gil, Martín, Díaz Peredo, Edgar Ulises, Sánchez Solano, Erika Fabiola, Santos Zavaleta, Alberto, Martínez Flores, Irma, Jiménez Jacinto, Verónica, Bonavides Martínez, César Augusto, Segura Salazar, Juan, Martínez Antonio, Agustino, Collado Vides, Pedro Julio. (2006). "RegulonDB (version 5.0): Escherichia coli K-12 transcriptional regulatory network, operon organization, and growth conditions.". Nucleic Acids Research. 34(Database issue):394-397. [doi:10.1093/nar/gkj156]16381895
2006González, V., Santamaría, R.I., Bustos, P., Acosta, J.L., Fernández, J.L., Hernández-González, I., Lozano, L., Castillo, S., Dávila, G.. (2006). "Genomic diversity of Rhizobium etli: The Complete Genome and its -intraspecific-variation". Revista Latinoamericana De Microbiologia. 48(2):132-134.
2006Aguilar-Diaz, H, Bobes, RJ, Carrero, JC, Camacho-Carranza, R, Cervantes, C, Cevallos, MA, Davila, G, Rodriguez-Dorantes, M, Escobedo, G, Fernandez, JL, Fragoso, G, Gaytan, P, Garciarubio, A, Gonzalez, VM, Gonzalez, L, Jose, MV, Jimenez, L, Laclette, JP, Landa, A, Larralde, C, Morales-Montor, J, Morett, E, Ostoa-Saloma, P, Sciutto, E, Santamaria, RI, Soberon, X, de la Torre, P, Valdes, V, Yanez, J. (2006). "The genome project of Taenia solium". PARASITOLOGY INTERNATIONAL. 55(SUPPL.):127-130. [doi:10.1016/j.parint.2005.11.020]16337432
2005Flores López, Margarita, Morales Reyes, Lucía Guadalupe, Ávila Casanueva, Agustin Bernardo, González Zúñiga, Víctor Manuel, Bustos Arcos, Virginia Patricia, García Alonso, Delfino, Pérez-Tejada Domínguez, Yolanda, Guo, Xianwu, Collado Vides, Pedro Julio, Pinero, D., Dávila Ramos, José Guillermo, Mora Celis, Jaime, Palacios de la Lama, Rafael. (2005). "Diversification of DNA sequences in the symbiotic genome of Rhizobium etli". Journal Of Bacteriology. 187(21):7185-7192. [doi:10.1128/JB.187.21.7185-7192.2005]16237002
2005Izquierdo, J, Venkova-Canova, T, Ramirez-Romero, MA, Tellez-Sosa, J, Hernandez-Lucas, I, Sanjuan, J, Cevallos, MA. (2005). "An antisense RNA plays a central role in the replication control of a repC plasmid". Plasmid. 54(3):259-277. [doi:10.1016/j.plasmid.2005.05.003]16005966
2005Dávila Ramos, José Guillermo, González Zúñiga, Víctor Manuel, Ramírez Romero, Miguel Ángel, Rodríguez Sánchez, Oscar. (2005). "Rhizobium etli genome biology". Nitrogen Fixation: Origins, Applications and Research Progress. 3():133-142.
2005Davila, S, Pinero, D, Bustos, P, Cevallos, MA, Davila, G. (2005). "The mitochondrial genome sequence of the scorpion Centruroides limpidus (Karsch 1879) (Chelicerata; Arachnida)". Gene. 360(2):92-102. [doi:10.1016/j.gene.2005.06.008]16183216
2004Venkova-Canova, T, Soberon, NE, Ramirez-Romero, MA, Cevallos, MA. (2004). "Two discrete elements are required for the replication of a repABC plasmid: an antisense RNA and a stem-loop structure". Molecular Microbiology. 54(5):1431-1444. [doi:10.1111/j.1365-2958.2004.04366.x]15554980
2004Brom Klanner, Susana, Girard Cuesy, María de Lourdes, Tun Garrido, Cristina Soleda, García de los Santos, Alejandro, Bustos Arcos, Virginia Patricia, González Zúñiga, Víctor Manuel, Romero Camarena, David René. (2004). "Transfer of the symbiotic plasmid of Rhizobium etli CFN42 requires cointegration with p42a, which may be mediated by site-specific recombination". Journal Of Bacteriology. 186(22):7538-7548. [doi:10.1128/JB.186.22.7538-7548.2004]15516565
2004Soberon, N, Venkova-Canova, T, Ramirez-Romero, MA, Tellez-Sosa, J, Cevallos, MA. (2004). "Incompatibility and the partitioning site of the repABC basic replicon of the symbiotic plasmid from Rhizobium etli". Plasmid. 51(3):203-216. [doi:10.1016/j.plasmid.2004.01.005]15109827
2003González Zúñiga, Víctor Manuel, Bustos Arcos, Virginia Patricia, Ramírez Romero, Miguel Ángel, Medrano Soto, Luis Arturo, Salgado Osorio, Heladia, Hernández González, Ismael Luis, Hernández Celis, Juan Carlos, Quintero Hernández, Verónica, Moreno Hagelsieb, Gabriel, Girard Cuesy, María de Lourdes, Rodríguez Sánchez, Oscar, Flores López, Margarita, Cevallos Gaos, Miguel Ángel Carlos, Collado Vides, Pedro Julio, Romero Camarena, David René, Dávila Ramos, José Guillermo. (2003). "The mosaic structure of the symbiotic plasmid of Rhizobium etli CFN42 and its relation to other symbiotic genome compartments.". Genome Biology. 4(6):-. [doi:10.1186/gb-2003-4-6-r36]12801410
2003Tun-Garrido, C, Bustos, P, Gonzalez, V, Brom, S. (2003). "Conjugative transfer of p42a from Rhizobium etli CFN42, which is required for mobilization of the symbiotic plasmid, is regulated by quorum sensing". Journal Of Bacteriology. 185(5):1681-1692. [doi:10.1128/JB.185.5.1681-1692.2003]12591886
2002del Río G., Santamaria Gutiérrez, Rosa Isela, Díaz M.L., Soberón Mainero, Xavier, López-Munguía, Agustín. (2002). "Novel and potential applications of alpha-amylases in the food industry". Engineering and Food for the 21st Century. ():913-925.
2002Cevallos, MA, Porta, H, Izquierdo, J, Tun-Garrido, C, Garcia-de-los-Santos, A, Davila, G, Brom, S. (2002). "Rhizobium etli CFN42 contains at least three plasmids of the repABC family: A structural and evolutionary analysis". Plasmid. 48(2):104-116. [doi:10.1016/S0147-619X(02)00119-1]12383728
2002Quintero, V, Cevallos, MA, Davila, G. (2002). "A site-specific recombinase (RinQ) is required to exert incompatibility towards the symbiotic plasmid of Rhizobium etli". Molecular Microbiology. 46(4):1023-1032. [doi:10.1046/j.1365-2958.2002.03205.x]12421308
2002Tellez-Sosa, J, Soberon, N, Vega-Segura, A, Torres-Marquez, ME, Cevallos, MA. (2002). "The Rhizobium etli cyaC product: Characterization of a novel adenylate cyclase class". Journal Of Bacteriology. 184(13):3560-3568. [doi:10.1128/JB.184.13.3560-3568.2002]12057950
2001Ramirez-Romero, MA, Tellez-Sosa, J, Barrios, H, Perez-Oseguera, A, Rosas, V, Cevallos, MA. (2001). "RepA negatively autoregulates the transcription of the repABC operon of the Rhizobium etli symbiotic plasmid basic replicon". Molecular Microbiology. 42(1):195-204. [doi:10.1046/j.1365-2958.2001.02621.x]11679078
2000Ramirez-Romero, MA, Soberon, N, Perez-Oseguera, A, Tellez-Sosa, J, Cevallos, MA. (2000). "Structural elements required for replication and incompatibility of the Rhizobium etli symbiotic plasmid". Journal Of Bacteriology. 182(11):3117-3124. [doi:10.1128/JB.182.11.3117-3124.2000]10809690
2000Cevallos Gaos, Miguel Ángel Carlos. (2000). "Armas biológicas". ¿Cómo ves?. 15():10-14.
1999Wang, ET, Roel, MA, Garcia-de los Santos, A, Martinez-Romero, Julio, Cevallos, MA, Martinez-Romero, E. (1999). "Rhizobium etli bv. mimosae, a novel biovar isolated from Mimosa affinis". INTERNATIONAL JOURNAL OF SYSTEMATIC BACTERIOLOGY. 49(4):1479-1491. [doi:10.1099/00207713-49-4-1479]10555329
1999Cevallos Gaos, Miguel Ángel Carlos. (1999). "La Peste, ayer y hoy". ¿Cómo ves?. 12():22-26.
1998Mandon, K, Michel-Reydellet, N, Encarnacion, S, Kaminski, PA, Leija, A, Cevallos, MA, Elmerich, C, Mora, J. (1998). "Poly-ß-hydroxybutyrate turnover in Azorhizobium caulinodans is required for growth and affects nifA expression". Journal Of Bacteriology. 180(19):5070-5076. [doi:10.1128/JB.180.19.5070-5076.1998]9748438
1997AguilarGaytan, R, Cerbon, MA, Cevallos, MA, Lizano, M, Huberman, A. (1997). "Sequence of a cDNA encoding the molt-inhibiting hormone from the Mexican crayfish Procambarus bouvieri (Crustacea, Decapoda)". ASIA-PACIFIC JOURNAL OF MOLECULAR BIOLOGY AND BIOTECHNOLOGY. 5(1):51-55.
1997RamirezRomero, MA, Bustos, P, Girard, L, Rodriguez, O, Cevallos, MA, Davila, G. (1997). "Sequence, localization and characteristics of the replicator region of the symbiotic plasmid of Rhizobium etli". MICROBIOLOGY-SGM. 143(8):2825-2831. [doi:10.1099/00221287-143-8-2825]9274036
1997Dunn, MF, Araiza, G, Cevallos, MA, Mora, J. (1997). "Regulation of pyruvate carboxylase in Rhizobium etli". Fems Microbiology Letters. 157(2):301-306. [doi:10.1016/S0378-1097(97)00491-6]9435112
1996Cevallos, MA, Encarnacion, S, Leija, A, Mora, Y, Mora, J. (1996). "Genetic and physiological characterization of a Rhizobium etli mutant strain unable to synthesize poly-ß-hydroxybutyrate". Journal Of Bacteriology. 178(6):1646-1654. [doi:10.1128/jb.178.6.1646-1654.1996]8626293
1996Pérez Oseguera, María de los Angeles, GUERECA, LEOPOLDO. (1996). "Acceptor Reactions of Levansucrase from Bacillus circulans. Enzyme Eng. XIII Annals. New York Academy of Science.". Acceptor Reactions of Levansucrase from Bacillus circulans. Vol 799():743-746.
1990LARAOCHOA, F, BUSTOS, VP. (1990). "Density dependent diffusional model of an infective population". Biosystems. 24(3):223-238. [doi:10.1016/0303-2647(90)90037-2]2073542
1990LARAOCHOA, F, BUSTOS, VP. (1990). "A model for aggregation-dispersion dynamics of a population". Biosystems. 24(3):215-222. [doi:10.1016/0303-2647(90)90036-Z]2127375
1990Lara-Ochoa, F., Bustos, V.P.. (1990). "Conflicting density dependent dynamics of a bacterial population". Applied Mathematics Letters. 3(4):81-84. [doi:10.1016/0893-9659(90)90052-D]