Producción Científica

Lista de publicaciones

AñoPublicaciónPMID
2019Sánchez-Cruz, R., Tpia Vázquez, I., Batista-García, R.A., Méndez-Santiago, E.W., Sánchez-Carbente, M.d.R., Leija, A, Lira-Ruan, V., Hernández, G, Wong-Villarreal, A. and Folch-Mallol, J.L.. (2019). "Isolation and characterization of endophytes from nodules of Mimosa Pudica with biotechnological potential". Microbiological Research. 218():76-86. [doi:10.1016/j.micres.2018.09.008]30454661
2018Matus-Acuña, V., Caballero-Flores, G., Reyes-Hernandez, B.J. and Martínez-Romero, E. (2018). "Bacterial preys and commensals condition the effects of bacteriovorus nematodes on Zea mays and Arabidopsis thaliana". APPLIED SOIL ECOLOGY. 132():99-106. [doi:10.1016/j.apsoil.2018.08.012]
2018Barreto-Curiel, F., Ramirez-Puebla, S.T., Ringø, E., Escobar-Zepeda, A., Godoy-Lozano, E., Vazquez-Duhalt, R., Sanchez-Flores, A. and Viana, M.T.. (2018). "Effects of extruded aquafeed on growth performance and gut microbiome of juvenile Totoaba macdonaldi". ANIM FEED SCI TECH. 245():91-103. [doi:10.1016/j.anifeedsci.2018.09.002]
2018Graña-Miraglia, L., Arreguín-Pérez, C., López-Leal, G., Muñoz, A., Pérez-Oseguera, A., Miranda-Miranda, E., Cossío-Bayúgar, R. and Castillo-Ramirez, S. (2018). "Phylogenomics picks out the par excellence markers for species phylogeny in the genus Staphylococcus .". Peerj. 6(10):e5839-. [doi:10.7717/peerj.5839]30386709
2018Domínguez-Baleón, C., Gutiérrez-Mondragón, L.F., Campos-González, A.I. and Rentería, M.E.. (2018). "Neuroimaging studies of suicidal behavior and non-suicidal self-injury in psychiatric patients: A systematic review". Frontiers in Psychiatry. 9(OCT):500-. [doi:10.3389/fpsyt.2018.00500]30386264
2018Isidra-Arellano, M.C., Reyero-Saavedra, M.D.R., Sánchez-Correa, M.D.S., Pingault, L., Sen, S., Joshi, T., Girard, L, Castro-Guerrero, N.A., Mendoza-Cozatl, D.G., Libault, M. and Valdés-López, O.. (2018). "Phosphate deficiency negatively affects early steps of the symbiosis between common bean and Rhizobia". Genes. 9(10):498-. [doi:10.3390/genes9100498]30326664
2018Ayra, L., Ramírez, M, Íñiguez, L.P., Rodés, R., Ortega, E. and Hernández, G. (2018). "The common bean (Phaseolus vulgaris) basic leucine zipper (bZIP) transcription factor family: Response to salinity stress in fertilized and symbiotic N2-fixing plants". Agriculture (switzerland). 8(10):160-. [doi:10.3390/agriculture8100160]
2018Zepeda Mendoza, M.L., Roggenbuck, M., Manzano Vargas, K., Hansen, L.H., Brunak, S., Gilbert, M.T.P. and Sicheritz-Pontén, T.. (2018). "Protective role of the vulture facial skin and gut microbiomes aid adaptation to scavenging". ACTA VET SCAND. 60(1):61-61. [doi:10.1186/s13028-018-0415-3]30309375
2018Fernández-Coto, D.L., Gil, J., Hernández, A., Herrera-Goepfert, R., Castro-Romero, I., Hernández-Márquez, E., Arenas-Linares, A.S., Calderon-Sosa, V.T., Sanchez-Aleman, M.Á., Mendez-Tenorio, A., Encarnación, S and Ayala, G.. (2018). "Quantitative proteomics reveals proteins involved in the progression from non-cancerous lesions to gastric cancer". Journal Of Proteomics. 186():15-27. [doi:10.1016/j.jprot.2018.07.013]30048774
2018Aguilar, A, Mora Y, Dávalos, A, Girard, L, Mora, J and Peralta, H. (2018). "Analysis of genome sequence and symbiotic ability of rhizobial strains isolated from seeds of common bean (Phaseolus vulgaris).". Bmc Genomics. 19(1):645-645. [doi:10.1186/s12864-018-5023-0]30165827
2018Yamamoto, K., Gris, K.V., Sotelo Fonseca, J.E., Gharagozloo, M., Mahmoud, S., Simard, C., Houle-Martel, D., Cloutier, T., Gris, P. and Gris, D.. (2018). "Exhaustive multi-parametric assessment of the behavioral array of daily activities of mice using cluster and factor analysis". FRONT BEHAV NEUROSCI. 12():187-187. [doi:10.3389/fnbeh.2018.00187]30214401
2018Challagundla, Lavanya, Reyes, Jinnethe, Rafiqullah, Iftekhar, Sordelli, Daniel O., Echaniz-Aviles, Gabriela, Velazquez-Meza, Maria E., Castillo-Ramirez, S, Fittipaldi, Nahuel, Feldgarden, Michael, Chapman, Sinead B., Calderwood, Michael S., Carvajal, Lina P., Rincon, Sandra, Hanson, Blake, Planet, Paul J., Arias, Cesar A., Diaz, Lorena and Robinson, D. Ashley. (2018). "Phylogenomic Classification and the Evolution of Clonal Complex 5 Methicillin-Resistant Staphylococcus Aureus in the Western Hemisphere". Frontiers in Microbiology. 9():-. [doi:10.3389/fmicb.2018.01901]30186248
2018Santos-Zavaleta, A, Sanchez-Perez, Mishael, Salgado, H, Velazquez-Ramirez, David A., Gama-Castro, S, Tierrafria, Victor H., Busby, Stephen J. W., Aquino, Patricia, Fang, Xin, Palsson, Bernhard O., Galagan, James E. and Collado-Vides, J. (2018). "A unified resource for transcriptional regulation in Escherichia coli K-12 incorporating high-throughput-generated binding data into RegulonDB version 10.0". BMC BIOL. 16(1):91-91. [doi:10.1186/s12915-018-0555-y]30115066
2018Martin-Rodriguez, Jose A., Leija, A, Formey, D and Hernández, G. (2018). "The MicroRNA319d/TCP10 Node Regulates the Common Bean - Rhizobia Nitrogen-Fixing Symbiosis". Frontiers In Plant Science. 9():1175-1175. [doi:10.3389/fpls.2018.01175]30147704
2018Rosenblueth, M, Ormeno-Orrillo, Ernesto, Lopez-Lopez, Aline, Rogel, MA, Reyes-Hernandez, Blanca Jazmin, Martínez, J, Reddy, Pallavolu M. and Martínez-Romero, E. (2018). "Nitrogen Fixation in Cereals". Frontiers in Microbiology. 9():1794-1794. [doi:10.3389/fmicb.2018.01794]30140262
2018Casasola-Rodriguez, Beatriz, Ruiz-Palacios, Guillermo M., Pilar, Ramos-Cervantes, Lozano, L, Ignacio, Monje-Ramirez and Orta de Velasquez, Maria Teresa. (2018). "Detection of VBNC Vibrio Cholerae by RT-Real Time PCR based on differential gene expression analysis". Fems Microbiology Letters. 365(15):-. [doi:10.1093/femsle/fny156]29961811
2018Ferreira-Saab, M., Formey, D, Torres, M., Aragón, W., Padilla, E.A., Tromas, A, Sohlenkamp, C, Schwan-Estrada, K.R.F. and Serrano, M. (2018). "Compounds released by the biocontrol yeast Hanseniaspora opuntiae protect plants against Corynespora cassiicola and Botrytis Cinerea". Frontiers in Microbiology. 9(JUL):1596-1596. [doi:10.3389/fmicb.2018.01596]30065716
2018Guevara-Luna, J., Alvarez-Fitz, P., Ríos-Leal, E., Acevedo-Quiroz, M., Encarnación, S, Moreno-Godinez, M.E., Castellanos-Escamilla, M., Toribio-Jiménez, J. and Romero-Ramírez, Y.. (2018). "Biotransformation of benzo[a]pyrene by the thermophilic bacterium Bacillus licheniformis M2-7". World Journal Of Microbiology & Biotechnology. 34(7):88-. [doi:10.1007/s11274-018-2469-9]29886516
2018Montes-Grajales, D, Martínez-Romero, E and Olivero-Verbel, Jesus. (2018). "Phytoestrogens and mycoestrogens interacting with breast cancer proteins". Steroids. 134():9-15. [doi:10.1016/j.steroids.2018.03.010]29608946
2018López-Lara, IM, Nogales, J., Pech-Canul, Á., Calatrava-Morales, N., Bernabéu-Roda, L.M., Durán, P., Cuéllar, V., Olivares, J., Alvarez, L., Palenzuela-Bretones, D., Romero, M., Heeb, S., Cámara, M., Geiger, O and Soto, M.J.. (2018). "2-Tridecanone impacts surface-associated bacterial behaviours and hinders plant–bacteria interactions". Environmental Microbiology. 20(6):2049-2065. [doi:10.1111/1462-2920.14083]29488306
2018Guzmán-Flores JM, Flores-Pérez EC, Hernández-Ortiz M, Vargas-Ortiz K, Ramírez-Emiliano J, Encarnación-Guevara S and Pérez-Vázquez V. (2018). "Protein Expression Profile of Twenty-Week-Old Diabetic db/db and Non-Diabetic Mice Livers: A Proteomic and Bioinformatic Analysis". Biomolecules. 8(2):35-. [doi:10.3390/biom8020035]29857581
2018González-Sánchez A, Cubillas CA, Miranda F, Dávalos, A and García-de los Santos, A. (2018). "The ropAe gene encodes a porin-like protein involved in copper transit in Rhizobium etli CFN42". MICROBIOLOGYOPEN. 7(3):e00573-. [doi:10.1002/mbo3.573]29280343
2018Gomez-Romero, Laura, Palacios-Flores, Kim, Reyes, Jose, García-Alonso, D, Boege, Margareta, Davila, Guillermo, Flores, Margarita, Schatz, Michael C. and Palacios, Rafael. (2018). "Precise detection of de novo single nucleotide variants in human genomes". PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 115(21):5516-5521. [doi:10.1073/pnas.1802244115]29735690
2018de Moraes, Marcos H., Becerra Soto, Emanuel, Gonzalez, Isai Salas, Desai, Prerak, Chu, Weiping, Porwollik, Steffen, McClelland, Michael and Teplitski, Max. (2018). "Genome-Wide Comparative Functional Analyses Reveal Adaptations of Salmonella sv. Newport to a Plant Colonization Lifestyle". Frontiers in Microbiology. 9(MAY):877-877. [doi:10.3389/fmicb.2018.00877]29867794
2018Latif, H., Federowicz, S., Ebrahim, A., Tarasova, J., Szubin, R., Utrilla, J, Zengler, K. and Palsson, B.O.. (2018). "ChIP-exo interrogation of Crp, DNA, and RNAP holoenzyme interactions". Plos One. 13(5):e0197272-. [doi:10.1371/journal.pone.0197272]29771928
2018Sandner-Miranda, Luisa, Vinuesa, P, Cravioto, Alejandro and Morales-Espinosa, Rosario. (2018). "The genomic basis of intrinsic and acquired antibiotic resistance in the genus Serratia". Frontiers in Microbiology. 9(MAY):828-828. [doi:10.3389/fmicb.2018.00828]29867787
2018Stefan, A., Van Cauwenberghe, J., Rosu, C.M., Stedel, C., Labrou, N.E., Flemetakis, E. and Efrose, R.C.. (2018). "Genetic diversity and structure of Rhizobium leguminosarum populations associated with clover plants are influenced by local environmental variables". Systematic And Applied Microbiology. 41(3):251-259. [doi:10.1016/j.syapm.2018.01.007]29452714
2018Frisch MB, Castillo-Ramirez, S, Petit RA 3rd, Farley MM, Ray SM, Albrecht VS, Limbago BM, Hernandez J, See I, Satola SW and Read TD. (2018). "Invasive Methicillin-Resistant Staphylococcus Aureus USA500 Strains from the U.S. Emerging Infections Program Constitute Three Geographically Distinct Lineages.". mSphere. 3(3):-. [doi:10.1128/mSphere.00571-17]29720528
2018Vinuesa, P, Ochoa-Sánchez, L.E. and Contreras-Moreira, B.. (2018). "GET_PHYLOMARKERS, a software package to select optimal orthologous clusters for phylogenomics and inferring pan-genome phylogenies, used for a critical geno-taxonomic revision of the genus Stenotrophomonas". Frontiers in Microbiology. 9(MAY):771-771. [doi:10.3389/fmicb.2018.00771]29765358
2018Rodriguez-Beltran, J., Hernandez-Beltran, J.C.R., Delafuente, J., Escudero, J.A., Fuentes-Hernández, A, MacLean, R.C., Peña-Miller, F and San Millan, A.. (2018). "Multicopy plasmids allow bacteria to escape from fitness trade-offs during evolutionary innovation". Nature Ecology & Evolution. 2(5):873-881. [doi:10.1038/s41559-018-0529-z]29632354
2018Guerrero-Castro, Julio, Lozano, L and Sohlenkamp, C. (2018). "Dissecting the acid stress response of Rhizobium tropici CIAT 899". Frontiers in Microbiology. 9(APR):846-846. [doi:10.3389/fmicb.2018.00846]29760688
2018Becerra-Rivera, V.A., Bergström, E., Thomas-Oates, J. and Dunn, MF. (2018). "Polyamines are required for normal growth in Sinorhizobium meliloti". MICROBIOLOGY-SGM. 164(4):600-613. [doi:10.1099/mic.0.000615]29619919
2018Zepeda Mendoza, M.L., Xiong, Z., Escalera-Zamudio, M., Runge, A.K., Thézé, J., Streicker, D., Frank, H.K., Loza-Rubio, E., Liu, S., Ryder, O.A., Samaniego Castruita, J.A., Katzourakis, A., Pacheco, G., Taboada, B., Löber, U., Pybus, O.G., Li, Y., Rojas-Anaya, E., Bohmann, K., Carmona Baez, A., Arias, C.F., Liu, S., Greenwood, A.D., Bertelsen, M.F., White, N.E., Bunce, M., Zhang, G., Sicheritz-Pontén, T. and Gilbert, M.P.T.. (2018). "Hologenomic adaptations underlying the evolution of sanguivory in the common vampire bat". Nature Ecology & Evolution. 2(4):659-668. [doi:10.1038/s41559-018-0476-8]29459707
2018Hölzl G, Sohlenkamp, C, Vences-Guzmán, MA and Gisch N. (2018). "Headgroup hydroxylation by OlsE occurs at the C4 position of ornithine lipid and is widespread in proteobacteria and bacteroidetes.". CHEM PHYS LIPIDS. 213():32-38. [doi:10.1016/j.chemphyslip.2018.03.002]29524395
2018Chen, Lin-Xing, Mendez-Garcia, Celia, Dombrowski, Nina, Servin-Garciduenas, Luis E., Eloe-Fadrosh, Emiley A., Fang, Bao-Zhu, Luo, Zhen-Hao, Tan, Sha, Zhi, Xiao-Yang, Hua, Zheng-Shuang, Martínez-Romero, E, Woyke, Tanja, Huang, Li-Nan, Sanchez, Jesus, Isabel Pelaez, Ana, Ferrer, Manuel, Baker, Brett J. and Shu, Wen-Sheng. (2018). "Metabolic versatility of small archaea Micrarchaeota and Parvarchaeota". ISME JOURNAL. 12(3):756-775. [doi:10.1038/s41396-017-0002-z]29222443
2018Blanc, Catherine, Coluccia, Fania, L'Haridon, Floriane, Torres, Martha, Ortiz-Berrocal, Marlene, Stahl, Elia, Reymond, Philippe, Schreiber, Lukas, Nawrath, Christiane, Metraux, Jean-Pierre and Serrano, M. (2018). "The cuticle mutant eca2 modifies plant defense responses to biotrophic and necrotrophic pathogens and herbivory insects". Molecular Plant-Microbe Interactions. 31(3):344-355. [doi:10.1094/MPMI-07-17-0181-R]29130376
2018Kumar, K. Mohan, Mahendhiran, M., Casales Diaz, M., Hernandez-Como, N., Hernandez-Eligio, A., Torres-Torres, Gilberto, Godavarthi, S. and Martinez Gomez, L.. (2018). "Green synthesis of Ce3+ rich CeO2 nanoparticles and its antimicrobial studies". MATERIALS LETTERS. 214():15-19. [doi:10.1016/j.matlet.2017.11.097]
2018Seulveda-Cisternas, Ignacio, Lozano, L, Fuentes Flores, Andres, Solis de Ovando, Ignacio Vasquez and Antonio Garcia-Angulo, Victor. (2018). "Transcriptomics reveals a cross-modulatory effect between riboflavin and iron and outlines responses to riboflavin biosynthesis and uptake in &ITVibrio Cholerae&IT". SCIENTIFIC REPORTS. 8(1):3149-3149. [doi:10.1038/s41598-018-21302-3]29453341
2018Chiozzotto, Remo, Ramírez, M, Talbi, Chouhra, Cominelli, Eleonora, Girard, L, Sparvoli, Francesca and Hernández, G. (2018). "Characterization of the symbiotic nitrogen-fixing common bean Low phytic acid (Lpa1) mutant response to water stress". Genes. 9(2):99-. [doi:10.3390/genes9020099]29462877
2018Toledo-Leyva, Alfredo, Cesar Villegas-Pineda, Julio, Encarnación, S, Gallardo-Rincon, Dolores and Talamas-Rohana, Patricia. (2018). "Effect of ovarian cancer ascites on SKOV-3 cells proteome: new proteins associated with aggressive phenotype in epithelial ovarian cancer". Proteome Science. 16():3-3. [doi:10.1186/s12953-018-0133-9]29456457
2018Mendoza-Hoffmann, F., Pérez-Oseguera, Á., Cevallos, MA, Zarco-Zavala, M., Ortega, R., Peña-Segura, C., Espinoza-Simón, E., Uribe-Carvajal, S. and García-Trejo, J.J.. (2018). "The Biological Role of the zeta Subunit as Unidirectional Inhibitor of the F1FO-ATPase of Paracoccus denitrificans". CELL REPORTS. 22(4):1067-1078. [doi:10.1016/j.celrep.2017.12.106]29386127
2018Conde-Álvarez R, Palacios-Chaves L, Gil-Ramírez Y, Salvador-Bescós M, Bárcena-Varela M, Aragón-Aranda B, Martínez-Gómez E, Zúñiga-Ripa A, de Miguel MJ, Bartholomew TL, Hanniffy S, Grilló MJ, Vences-Guzmán, MA, Bengoechea JA, Arce-Gorvel V, Gorvel JP, Moriyón I and Iriarte M. (2018). "Identification of lptA, lpxE, and lpxO, three genes involved in the remodeling of Brucella cell envelope". Frontiers in Microbiology. 8(JAN):2657-2657. [doi:10.3389/fmicb.2017.02657]29375522
2018Julieta Solis-Gonzalez, Claudia, Dominguez-Malfavon, Lilianha, Vargas-Suarez, Martin, Gaytan, Itzel, Cevallos, MA, Lozano, L, Javier Cruz-Gomez, M. and Loza-Tavera, Herminia. (2018). "Novel metabolic pathway for N-methylpyrrolidone degradation in Alicycliphilus sp. strain BQ1". Applied And Environmental Microbiology. 84(1):e02136-17-. [doi:10.1128/AEM.02136-17]29030443
2018Martínez-Romero, E, Rodriguez-Medina, Nadia, Beltran-Rojel, Marilu, Toribio-Jimenez, Jeiry and Garza-Ramos, Ulises. (2018). "Klebsiella variicola and Klebsiella quasipneumoniae with capacity to adapt to clinical and plant settings". Salud Publica De Mexico. 60(1):29-40. [doi:10.21149/8156]29689654
2018Martínez-Romero, E, Rodriguez-Medina, Nadia, Beltran-Rojel, Marilu, Silva-Sanchez, Jesus, Barrios-Camacho, Humberto, Perez-Rueda, Ernesto and Garza-Ramos, Ulises. (2018). "Genome misclassification of Klebsiella variicola and Klebsiella quasipneumoniae isolated from plants, animals and humans". Salud Publica De Mexico. 60(1):56-62. [doi:10.21149/8149]29689657
2017Silva, Claudia, Betancor, Laura, Garcia, Coralith, Astocondor, Lizeth, Hinostroza, Noemi, Bisio, Julieta, Rivera, J, Perezgasga, Lucia, Perez Escanda, Victoria, Yim, Lucia, Jacobs, Jan, Garcia-del Portillo, Francisco, Chabalgoity, Jose A., Puente, Jose L. and SalmoIber CYTED Network. (2017). "Characterization of Salmonella enterica isolates causing bacteremia in Lima, Peru, using multiple typing methods". Plos One. 12(12):e0189946-. [doi:10.1371/journal.pone.0189946]29267322
2017Vargas, MC, Mora, Yolanda, Díaz-Mendez, R, Martínez-Batallar, AG, Girard, L, Encarnación, S, Peralta, H and Mora, J. (2017). "Overproduction of Sinorhizobium meliloti argC (N-acetyl-gamma-glutamyl phosphate reductase) promotes growth delay and inefficient nodules". Fems Microbiology Letters. 364(23):fnx233-. [doi:10.1093/femsle/fnx233]29121239
2017Marin, R., Cortez, D, Lamanna, F., Pradeepa, M.M., Leushkin, E., Julien, P., Liechti, A., Halbert, J., Brüning, T., Mössinger, K., Trefzer, T., Conrad, C., Kerver, H.N., Wade, J., Tschopp, P. and Kaessmann, H.. (2017). "Convergent origination of a Drosophila-like dosage compensation mechanism in a reptile lineage". GENOME RESEARCH. 27(12):1974-1987. [doi:10.1101/gr.223727.117]29133310
2017Romero-Gutierrez, Teresa, Peguero-Sanchez, Esteban, Cevallos, MA, Batista, Cesar V. F., Ortiz, Ernesto and Possani, Lourival D.. (2017). "A Deeper Examination of Thorellius Atrox Scorpion Venom Components with Omic Techonologies". Toxins. 9(12):399-. [doi:10.3390/toxins9120399]29231872
2017Ruíz-Valdiviezo VM, Rogel, MA, Guerrero, G, Rincón-Molina CI, García-Perez LG, Gutiérrez-Miceli FA, Villalobos-Maldonado JJ, López-López A, Martínez-Romero, E and Rincón-Rosales R. (2017). "Complete genome sequence of a novel nonnodulating Rhizobium species isolated from Agave Americana L. rhizosphere". Genome Announcements. 5(46):e01280-17-. [doi:10.1128/genomeA.01280-17]29146860
2017Aragon, Wendy, Juan Reina-Pinto, Jose and Serrano, M. (2017). "The intimate talk between plants and microorganisms at the leaf surface". Journal Of Experimental Botany. 68(19):5339-5350. [doi:10.1093/jxb/erx327]29136456
2017Gil J, Ramírez-Torres A, Chiappe D, Luna-Peñaloza J, Fernandez-Reyes FC, Arcos-Encarnación B, Contreras-Martínez, S and Encarnación, S. (2017). "Lysine acetylation stoichiometry and proteomics analyses reveal pathways regulated by sirtuin 1 in human cells". JOURNAL OF BIOLOGICAL CHEMISTRY. 292(44):18129-18144. [doi:10.1074/jbc.M117.784546]28893905
2017Olvera, C., Santamaria, RI, Bustos, P, Vallejo, C., Montor, J.J., Wacher, C. and Munguia, A.L.. (2017). "Draft genome sequence of Leuconostoc citreum CW28 isolated from pozol, a pre-Hispanic fermented corn beverage". Genome Announcements. 5(48):e01283-17-. [doi:10.1128/genomeA.01283-17]
2017López-Lara, IM and Geiger, O. (2017). "Bacterial lipid diversity". Biochimica Et Biophysica Acta-Molecular And Cell Biology Of Lipids. 1862(11):1287-1299. [doi:10.1016/j.bbalip.2016.10.007]27760387
2017De Las Rivas, J., Bonavides-Martínez, C and Campos-Laborie, F.J.. (2017). "Corrigendum: Bioinformatics in Latin America and SoIBio impact, a tale of spin-off and expansion around genomes and protein structures [Briefings in Bioinformatics, (2017)] doi: 10.1093/bib/bbx064". BRIEF BIOINFORM. 18(6):1091-1091. [doi:10.1093/bib/bbx114]28968628
2017Romero, D, Torres-Irineo, E., Kern, S., Orellana, R. and Hernandez-Cerda, M.E.. (2017). "Determination of the soil moisture recession constant from satellite data: A case study of the yucatan peninsula". INT J REMOTE SENS. 38(20):5793-5813. [doi:10.1080/01431161.2017.1346844]
2017Sandoval-Calderón M, Guan Z and Sohlenkamp, C. (2017). "Knowns and unknowns of membrane lipid synthesis in streptomycetes". Biochimie. 141():21-29. [doi:10.1016/j.biochi.2017.05.008]28522365
2017Ortiz-Berrocal, Marlene, Lozano, L, Sanchez-Flores, Alejandro, Nava, Noreide, Hernández, G and Reddy, Pallavolu M.. (2017). "Expression in rice of an autoactive variant of Medicago truncatula DMI3, the Ca+2/calmodulin-dependent protein kinase from the common symbiotic pathway modifies root transcriptome and improves mycorrhizal colonization". PLANT BIOTECHNOLOGY REPORTS. 11(5):271-287. [doi:10.1007/s11816-017-0449-4]
2017Montes-Grajales, D, Fennix-Agudelo, Mary and Miranda-Castro, Wendy. (2017). "Occurrence of personal care products as emerging chemicals of concern in water resources: A review". SCIENCE OF THE TOTAL ENVIRONMENT. 595():601-614. [doi:10.1016/j.scitotenv.2017.03.286]28399499
2017Graña-Miraglia L, Lozano, L, Velázquez C, Volkow-Fernández P, Pérez-Oseguera Á, Cevallos, MA and Castillo-Ramirez, S. (2017). "Rapid gene turnover as a significant source of genetic variation in a recently seeded population of a healthcare-associated pathogen". Frontiers in Microbiology. 8(SEP):1817-1817. [doi:10.3389/fmicb.2017.01817]28979253
2017Freyre-González, JA and Tauch, A.. (2017). "Functional architecture and global properties of the Corynebacterium glutamicum regulatory network: Novel insights from a dataset with a high genomic coverage". JOURNAL OF BIOTECHNOLOGY. 257():199-210. [doi:10.1016/j.jbiotec.2016.10.025]27829123
2017Pérez-Oseguera Á, Castro-Jaimes S, Salgado-Camargo AD, Silva-Sanchez J, Garza-González E, Castillo-Ramirez, S and Cevallos, MA. (2017). "Complete genome sequence of a blaOXA-58-producing Acinetobacter Baumannii strain isolated from a Mexican hospital". Genome Announcements. 5(36):e00949-17-. [doi:10.1128/genomeA.00949-17]28883144
2017Ormeño-Orrillo E, Rey L, Durán D, Canchaya CA, Rogel, MA, Zúñiga-Dávila D, Imperial J, Ruiz-Argüeso T and Martínez-Romero, E. (2017). "Draft genome sequence of Bradyrhizobium paxllaeri LMTR 21Tisolated from Lima bean (Phaseolus lunatus) in Peru". Genomics Data. 13():38-40. [doi:10.1016/j.gdata.2017.06.008]28721334
2017Link V, Aguilar-Gómez D, Ramírez-Suástegui C, Hurst LD and Cortez, D. (2017). "Male mutation bias is the main force shaping chromosomal substitution rates in monotreme mammals". Genome Biology And Evolution. 9(9):2198-2210. [doi:10.1093/gbe/evx155]28922870
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2013Tsai, I.J., Zarowiecki, M., Holroyd, N., Garciarrubio, A., Sánchez-Flores, A., Brooks, K.L., Tracey, A., Bobes, R.J., Fragoso, G., Sciutto, E., Aslett, M., Beasley, H., Bennett, H.M., Cai, J., Camicia, F., Clark, R., Cucher, M., De Silva, N., Day, T.A., Deplazes, P., Estrada, K., Fernández, C., Holland, P.W., Hou, J., Hu, S., Huckvale, T., Hung, S.S., Kamenetzky, L., Keane, J.A., Kiss, F., Koziol, U., Lambert, O., Liu, K., Luo, X., Luo, Y., Macchiaroli, N., Nichol, S., Paps, J., Parkinson, J., Pouchkina-Stantcheva, N., Riddiford, N., Rosenzvit, M., Salinas, G., Wasmuth, J.D., Zamanian, M., Zheng, Y., Garciarrubio, A., Bobes, R.J., Fragoso, G., Sánchez-Flores, A., Estrada, K., Cevallos, MA, Morett, E., González, V, Portillo, T., Ochoa-Leyva, A., José, M.V., Sciutto, E., Landa, A., Jiménez, L., Valdés, V., Carrero, J.C., Larralde, C., Morales-Montor, J., Limón-Lason, J., Soberón, X., Laclette, J.P., Cai, X., Soberón, X., Olson, P.D., Laclette, J.P., Brehm, K. and Berriman, M.. (2013). "The genomes of four tapeworm species reveal adaptations to parasitism". Nature. 496(7443):57-63. [doi:10.1038/nature12031]23485966
2013Ramírez, M, Flores-Pacheco, G., Reyes, J.L., Álvarez, A.L., Drevon, J.J., Girard, L and Hernández, G. (2013). "Two Common Bean Genotypes with Contrasting Response to Phosphorus Deficiency Show Variations in the microRNA 399-Mediated PvPHO2 Regulation within the PvPHR1 Signaling Pathway". International Journal Of Molecular Sciences. 14(4):8328-8344. [doi:10.3390/ijms14048328]23591845
2013Geiger, O, López-Lara, IM and Sohlenkamp, C. (2013). "Phosphatidylcholine biosynthesis and function in bacteria". Biochimica Et Biophysica Acta-Molecular And Cell Biology Of Lipids. 1831(3):503-513. [doi:10.1016/j.bbalip.2012.08.009]22922101
2013Vences-Guzmán, MA, Guan, Z.Q., Bermúdez Barrientos, José Roberto, Geiger, O and Sohlenkamp, C. (2013). "Agrobacteria lacking ornithine lipids induce more rapid tumour formation". Environmental Microbiology. 15(3):895-906. [doi:10.1111/j.1462-2920.2012.02867.x]22958119
2013Servín Garcidueñas, Luis Eduardo, Peng X., Garrett R.A. and Martínez-Romero, E. (2013). "Genome sequence of a novel archaeal fusellovirus assembled from the metagenome of a Mexican hot spring". Genome Announcements. 1(2):e00164-13-. [doi:10.1128/genomeA.00164-13]23618716
2013Aparicio Fabre, Rosaura, Guillén, G., Loredo, M., Arellano García, José de Jesús, Valdes López, Oswaldo, Ramírez, M, Iñiguez Rabago, Luis Pedro, Panzeri, D., Castiglioni, B., Cremonesi, P., Strozzi, F., Stella, A., Girard, L, Sparvoli, F. and Hernández, G. (2013). "Common bean (Phaseolus vulgaris L.) PvTIFY orchestrates global changes in transcript profile response to jasmonate and phosphorus deficiency". Bmc Plant Biology. 13():26-26. [doi:10.1186/1471-2229-13-26]23402340
2013López López, Aline, Negrete-Yankelevich, S., Rogel, MA, Ormeño Orrillo, Ernesto Aldo, Martínez, J and Martínez-Romero, E. (2013). "Native bradyrhizobia from Los Tuxtlas in Mexico are symbionts of Phaseolus lunatus (Lima bean)". Systematic And Applied Microbiology. 36(1):33-38. [doi:10.1016/j.syapm.2012.10.006]23280323
2013Servín Garcidueñas, Luis Eduardo, Peng X., Garrett R.A. and Martínez-Romero, E. (2013). "Genome sequence of a novel archaeal rudivirus recovered from a Mexican hot spring". Genome Announcements. 1(1):e00040-12-. [doi:10.1128/genomeA.00040-12]23405288
2013da Silva, M. L. R. B., Santos, D. C., de Lyra, M. C. C. P., Mondragon-Jacobo, C. and Martínez-Romero, E. (2013). "Isolation and molecular characterization of endophytic bacteria associated with forage cactus (Opuntia spp.)". Acta Horticulturae. 995():99-108. [doi:10.17660/ActaHortic.2013.995.12]
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2013Palacios de la Lama, Rafael, Flores López, Margarita and Palacios Flores, Kim. (2013). "DNA AMPLIFICATION in vivo". Brenners Encyclopedia of Genetics. 2():341-343.
2013Gutiérrez-Román, M. I., Dunn, MF, Tinoco-Valencia, F., Holguín-Meléndez, K., Guillen Navarro, Griselda Karina and Huerta-Palacios, G.. (2013). "Antifungal activity of chitinases (chiA, chiC and chiB) produced by Serratia marcescens CFFSUR-B2 against Mycosphaerella Fijiensis causal agent of black sigatoka in banana (Musa spp.)". Acta Phytopathol. 43():96-.
2013de Luna,L. A., León, P., Encarnación, S and Guevara-García, A. A.. (2013). "Chloroplast omics". Barh Delmya. ():-.
2013Galindo Fentanes, E., Sánchez Castillo, J., Calva Mercado, E., Cuevas García, S., Davis Martínez, O., Larralde Ridaura, H., Iturriaga de la Fuente, G. and Hernández, G. (2013). "La Ciencia desde Morelos para el Mundo Tomo III: Química, Física y Matemáticas". La Unión de Morelos. ():-.
2013Pérez Segura, Gabriela, Pérez Oseguera, María de los Angeles and Cevallos, MA. (2013). "The repAC replication system of the Rhizobium leguminosarum pRL7 plasmid is functional: Implications regarding the origin and evolution of repABC plasmids". Plasmid. 69(1):49-57. [doi:10.1016/j.plasmid.2012.08.003]22975386
2013Navarro-Noya, Y.E., Martínez-Romero, E and Hernández-Rodríguez, C.. (2013). "Potential plant-growth-promoting and nitrogen-fixing bacteria associated with pioneer plants growing on mine tailings". Molecular Microbial Ecology of the Rhizosphere. 2():1003-1011.
2013Servín Garcidueñas, Luis Eduardo, Garrett R.A., Amils R. and Martínez-Romero, E. (2013). "Genome sequence of the acidophilic bacterium Acidocella sp. strain MX-AZ02". Genome Announcements. 1(1):e00041-12-. [doi:10.1128/genomeA.00041-12]23405365
2013Salgado, H, Peralta Gil, Martín, Gama-Castro, S, Santos-Zavaleta, A, Muñíz-Rascado, L, Garcia Sotelo, Jair Santiago, Weiss, V., Solano Lira, Hilda, Martínez-Flores, I, Medina Rivera, Alejandra Eugenia, Salgado Osorio, Gerardo, Alquicira-Hernández, S, Alquicira-Hernández, K, López-Fuentes, A, Porrón Sotelo, Liliana, Huerta Moreno, Araceli, Bonavides-Martínez, C, Balderas MartÍnez, Yalbi Itzel, Pannier, Lucia, Olvera, M., Labastida, A., Jiménez-Jacinto, V., Vega-Alvarado, L., Del Moral-Chávez, V, Hérnandez-Álvarez, A, Morett, E. and Collado-Vides, J. (2013). "RegulonDB v8.0: Omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more". Nucleic Acids Research. 41(D1):203-213. [doi:10.1093/nar/gks1201]23203884
2013Ferrera-Rodríguez, O., Greer, C.W., Juck, D., Consaul, L. L., Martínez-Romero, E and Whyte, L.G.. (2013). "Hydrocarbon-degrading potential of microbial communities from Arctic plants". Journal Of Applied Microbiology. 114(1):71-83. [doi:10.1111/jam.12020]22984892
2013Keseler, I.M., Mackie, A., Peralta Gil, Martín, Santos-Zavaleta, A, Gama-Castro, S, Bonavides-Martínez, C, Fulcher, C., Huerta Moreno, Araceli, Kothari, A., Krummenacker, M., Latendresse, M., Muñíz-Rascado, L, Ong, Q., Paley, S., Schroder, I., Shearer, A.G., Subhraveti, P., Travers, M., Weerasinghe, D., Weiss, V., Collado-Vides, J, Gunsalus, R.P., Paulsen, I. and Karp, P.D.. (2013). "EcoCyc: Fusing model organism databases with systems biology". Nucleic Acids Research. 41(D1):605-612. [doi:10.1093/nar/gks1027]23143106
2013Martínez-Aguilar, L, Caballero Mellado, José de Jesús and Estrada De Los Santos, Paulina. (2013). "Transfer of Wautersia Numazuensis to the genus Cupriavidus as Cupriavidus Numazuensis comb. nov.". International Journal Of Systematic And Evolutionary Microbiology. 63(1):208-211. [doi:10.1099/ijs.0.038729-0]22389284
2013Yessica, G.P., Alejandro, A., Ronald, F.C., José, A.J., Martínez-Romero, E, Samuel, C.S.J., Remedios, M.L.M. and Ormeño Orrillo, Ernesto Aldo. (2013). "Tolerance, growth and degradation of phenanthrene and benzo[a]pyrene by Rhizobium tropici CIAT 899 in liquid culture medium". APPLIED SOIL ECOLOGY. 63():105-111. [doi:10.1016/j.apsoil.2012.09.010]
2013Ramírez Puebla, Shamayim Tabita, Servín Garcidueñas, Luis Eduardo, Jiménez Marín, Leticia Berenice, Bolaños Avellaneda, Luis Manuel, Rosenblueth, M, Martínez, J, Rogel, MA, Ormeño Orrillo, Ernesto Aldo and Martínez-Romero, E. (2013). "Gut and root microbiota commonalities". Applied And Environmental Microbiology. 79(1):2-9. [doi:10.1128/AEM.02553-12]23104406
2013Martínez-Romero, E. (2013). "Los Biofertilizantes y su uso en la Agricultura. SAGARPA-COFUPRO-UNAM". Manual teórico-práctico. ():47-.
2013Ormeño Orrillo, Ernesto Aldo, Hungria, M. and Martínez-Romero, E. (2013). "The Prokaryotes?Prokaryotic Physiology and Biochemistry". Capítulo 11 Dinitrogen fixing prokaryotes. ():-.
2013Reddy, Pallavolu Maheswara, Altúzar Molina, Alma Rosa, Ortíz Berrocal, Marlene, Medina-Andrés, R., López Sámano, M., Martínez-Aguilar, L and Velázquez Hernández, M.L.. (2013). "Predisposition and Redesigning of Genetic Networks of Rice for Accommodating Nitrogen-Fixing Rhizobial Symbiosis". Muralidharan K and Siddiq EA. ():245-257.
2013López Guerrero, Martha Guadalupe, Ramírez Romero, Miguel Ángel and Martínez-Romero, E. (2013). "Rhizobial genetic repertoire to inhabit legume and nonlegume rhizospheres". Molecular Microbial Ecology of the Rhizosphere. 1():495-500.
2013Frausto-Solis, Juan, Sanchez-Perez, Mishael, Linan-Garcia, Ernesto, Paulo Sanchez-Hernandez, Juan and Ramachandran, Manoj. (2013). "Cluster Perturbation Simulated Annealing for Protein Folding Problem". JOURNAL OF UNIVERSAL COMPUTER SCIENCE. 19(15):2207-2223.
2013Castillo-Ramirez, S and Feil, E.J.. (2013). "Population genetics". The Prokaryotes: Prokaryotic Biology And Symbiotic Associations. ():255-266. [doi:10.1007/978-3-642-30194-0_83]
2012Ormeño Orrillo, Ernesto Aldo, Menna, P., Almeida, L.G.P., Ollero, F.J., Nicolás, M.F., Rodrígues, E.P., Nakatani, A.S., Batista, J.S.S., Chueire, L.M.O., Souza, R.C., Vasconcelos, A.T.R., Megias, M., Hungria, M. and Martínez-Romero, E. (2012). "Genomic basis of broad host range and environmental adaptability of Rhizobium tropici CIAT 899 and Rhizobium sp. PRF 81 which are used in inoculants for common bean (Phaseolus vulgaris L.)". Bmc Genomics. 13(1):735-735. [doi:10.1186/1471-2164-13-735]23270491
2012Althabegoiti, M.J., Lozano, L, Torres-Tejerizo, G., Ormeño Orrillo, Ernesto Aldo, Rogel, MA, González, V and Martínez-Romero, E. (2012). "Genome sequence of Rhizobium Grahamii CCGE502, a broad-host-range symbiont with low nodulation competitiveness in Phaseolus vulgaris". Journal Of Bacteriology. 194(23):6651-6652. [doi:10.1128/JB.01785-12]23144400
2012Wisniewski-Dye, Florence, Lozano, L, Acosta-Cruz, Erika, Borland, Stephanie, Drogue, Benoit, Prigent-Combaret, Claire, Rouy, Zoe, Barbe, Valerie, Mendoza Herrera, Alberto, González, V and Mavingui, Patrick. (2012). "Genome sequence of Azospirillum brasilense CBG497 and comparative analyses of Azospirillum core and accessory genomes provide insight into niche adaptation". Genes. 3(4):576-602. [doi:10.3390/genes3040576]24705077
2012Fernández-Sandoval, M.T., Huerta-Beristain, G., Trujillo-Martínez, B., Bustos, P, González, V, Bolivar, F., Gosset, G. and Martínez, A.. (2012). "Laboratory metabolic evolution improves acetate tolerance and growth on acetate of ethanologenic Escherichia coli under non-aerated conditions in glucose-mineral medium". Applied Microbiology And Biotechnology. 96(5):1291-1300. [doi:10.1007/s00253-012-4177-y]22669633
2012Rosenblueth, M, López-López, A., Martínez, J, Rogel, MA, Toledo, I. and Martínez-Romero, E. (2012). "Seed bacterial endophytes: Common genera, seed-to-seed variability and their possible role in plants". Acta Horticulturae. 938():39-48. [doi:10.17660/ActaHortic.2012.938.4]
2012López-Ortiz, C., Ferrera-Cerrato, R., Alarcón, A., Almaraz, J.J., Martínez-Romero, E and Mendoza-López, M.R.. (2012). "Establishment and physiological responses of symbiosis Rhizobium tropici-Leucaena leucocephala in presence of phenanthrene and naphthalene". REVISTA INTERNACIONAL DE CONTAMINACION AMBIENTAL. 28(4):333-342.
2012Escalera-Zamudio, M., Cobian-Guemes, G., Soto-del Río, M.D., Isa, P., Sánchez-Betancourt, I., Parissi-Crivelli, A., Martinez-Cazares, M.T., Romero, P., Velázquez-Salinas, L., Huerta-Lozano, B., Nelson, M., Montero, H., Vinuesa, P, López, S. and Arias, C.F.. (2012). "Characterization of an influenza A virus in Mexican swine that is related to the A/H1N1/2009 pandemic clade". Virology. 433(1):176-182. [doi:10.1016/j.virol.2012.08.003]22921315
2012Servín Garcidueñas, Luis Eduardo and Martínez-Romero, E. (2012). "Complete mitochondrial and plastid genomes of the green microalga Trebouxiophyceae sp. strain MX-AZ01 isolated from a highly acidic geothermal lake". Eukaryotic cell. 11(11):1417-1418. [doi:10.1128/EC.00244-12]23104370
2012Zamorano-Sánchez, D, Reyes-González, A, Gómez Hernández, Nicolás, Rivera, P., Georgellis, D. and Girard, L. (2012). "FxkR Provides the Missing Link in the fixL-fixK Signal Transduction Cascade in Rhizobium etli CFN42". Molecular Plant-Microbe Interactions. 25(11):1506-1517. [doi:10.1094/MPMI-05-12-0136-R]22809273
2012López Guerrero, Martha Guadalupe, Ormeño Orrillo, Ernesto Aldo, CCG, Mendoza-Vargas, A., Rogel, MA, Ramírez Romero, Miguel Ángel, Rosenblueth, M, Martínez, J and Martínez-Romero, E. (2012). "Rhizobial extrachromosomal replicon variability, stability and expression in natural niches". Plasmid. 68(3):149-158. [doi:10.1016/j.plasmid.2012.07.002]22813963
2012Servín Garcidueñas, Luis Eduardo, Rogel, MA, Ormeño Orrillo, Ernesto Aldo, Delgado-Salinas, A., Martínez, J, Sánchez, F. and Martínez-Romero, E. (2012). "Genome Sequence of Rhizobium sp. Strain CCGE510, a Symbiont Isolated from Nodules of the Endangered Wild Bean Phaseolus Albescens". Journal Of Bacteriology. 194(22):6310-6311. [doi:10.1128/JB.01536-12]23105056
2012Rosenblueth, M, Sayavedra Camacho, Lizbeth, Sámano Sánchez, Hugo Carlos, Roth Schulze, Alexandra Jazmín and Martínez-Romero, E. (2012). "Evolutionary relationships of flavobacterial and enterobacterial endosymbionts with their scale insect hosts (Hemiptera: Coccoidea)". Journal Of Evolutionary Biology. 25(11):2357-2368. [doi:10.1111/j.1420-9101.2012.02611.x]22994649
2012Navarro-Noya, Yendi E., Hernandez-Mendoza, Emma, Morales-Jimenez, Jesus, Jan-Roblero, Janet, Martínez-Romero, E and Hernandez-Rodriguez, Cesar. (2012). "Isolation and characterization of nitrogen fixing heterotrophic bacteria from the rhizosphere of pioneer plants growing on mine tailings". APPLIED SOIL ECOLOGY. 62():52-60. [doi:10.1016/j.apsoil.2012.07.011]
2012Lopez-Ortiz, Carlos, Ferrera-Cerrato, Ronald, Alarcon, Alejandro, Jose Almaraz, Juan, Martínez-Romero, E and Remedios Mendoza-Lopez, Ma. (2012). "ESTABLISHMENT AND PHYSIOLOGICAL RESPONSES OF THE SYMBIOSIS BETWEEN Rhizobium tropici AND Leucaena leucocephala UNDER CONTAMINATED SYSTEMS WITH NAPHTALENE AND PHENANTHRENE". REVISTA INTERNACIONAL DE CONTAMINACION AMBIENTAL. 28(4):333-342.
2012Freyre-González, JA, Treviño-Quintanilla, L.G., Valtierra Gutiérrez, Ilse Ariadna, Gutiérrez Ríos, Rosa María and Alonso Pavón, José Antonio. (2012). "Prokaryotic regulatory systems biology: Common principles governing the functional architectures of Bacillus Subtilis and Escherichia coli unveiled by the natural decomposition approach". JOURNAL OF BIOTECHNOLOGY. 161(3):278-286. [doi:10.1016/j.jbiotec.2012.03.028]22728391
2012Formey, D, Jourda, C., Roux, C. and Delaux, P.M.. (2012). "What the Genomics of Arbuscular Mycorrhizal Symbiosis Teaches Us about Root Development". Root Genomics And Soil Interactions. ():171-188. [doi:10.1002/9781118447093.ch9]
2012Bonilla-Rosso, G., Eguiarte, L.E., Romero, D, Travisano, M. and Souza, V.. (2012). "Understanding microbial community diversity metrics derived from metagenomes: Performance evaluation using simulated data sets". Fems Microbiology Ecology. 82(1):37-49. [doi:10.1111/j.1574-6941.2012.01405.x]22554028
2012Marin-Cevada, V., Muñoz-Rojas, J., Caballero-Mellado, J, Mascarua-Esparza, M.A., Castañeda-Lucio, M., Carreno-López, R., Estrada-de los Santos, P and Fuentes-Ramírez, L.E.. (2012). "Antagonistic interactions among bacteria inhabiting pineapple". APPLIED SOIL ECOLOGY. 61(SI):230-235. [doi:10.1016/j.apsoil.2011.11.014]
2012Tejerizo, G.T., Lozano, L, González, V, Bustos, P, Romero, D and Brom, S. (2012). "Draft genome sequence of the bean-nodulating Sinorhizobium fredii strain GR64". Journal Of Bacteriology. 194(24):6978-6978. [doi:10.1128/JB.01882-12]23209231
2012García-García, J.D., Olin-Sandoval, V., Saavedra, E., Girard, L, Hernández, G and Moreno-Sánchez, R.. (2012). "Sulfate uptake in photosynthetic Euglena Gracilis. Mechanisms of regulation and contribution to cysteine homeostasis". Biochimica Et Biophysica Acta-General Subjects. 1820(10):1567-1575. [doi:10.1016/j.bbagen.2012.05.002]22609877
2012Ormeño Orrillo, Ernesto Aldo, Rogel, MA, Chueire, L.M.O., Tiedje, J.M., Martínez-Romero, E and Hungria, M.. (2012). "Genome sequences of Burkholderia sp. strains CCGE1002 and H160,isolated from legume nodules in Mexico and Brazil". Journal Of Bacteriology. 194(24):6927-6927. [doi:10.1128/JB.01756-12]23209196
2012Vences-Guzmán, MA, Geiger, O and Sohlenkamp, C. (2012). "Ornithine lipids and their structural modifications: From A to E and beyond". Fems Microbiology Letters. 335(1):1-10. [doi:10.1111/j.1574-6968.2012.02623.x]22724388
2012Resendis Antonio, Osbaldo, Hérnandez, M, Pérez-Tejada Domínguez, Yolanda and Encarnación, S. (2012). "Functional Modules, Structural Topology, and Optimal Activity in Metabolic Networks". Plos Computational Biology. 8(10):1002720-. [doi:10.1371/journal.pcbi.1002720]23071431
2012López López, Aline, Rogel, MA, Barois, I., Ceballos, A.I.O., Martínez, J, Ormeño Orrillo, Ernesto Aldo and Martínez-Romero, E. (2012). "Rhizobium Grahamii sp. nov., from nodules of Dalea Leporina, Leucaena leucocephala and Clitoria Ternatea, and Rhizobium Mesoamericanum sp. nov., from nodules of Phaseolus vulgaris, siratro, cowpea and Mimosa Pudica". International Journal Of Systematic And Evolutionary Microbiology. 62(9):2264-2271. [doi:10.1099/ijs.0.033555-0]22081714
2012López Guerrero, Martha Guadalupe, Ormeño Orrillo, Ernesto Aldo, Velázquez, E., Rogel, MA, CCG, González, V, Martínez, J and Martínez-Romero, E. (2012). "Rhizobium etli taxonomy revised with novel genomic data and analyses". Systematic And Applied Microbiology. 35(6):353-358. [doi:10.1016/j.syapm.2012.06.009]22858268
2012de la Rosa, J.J.P., Ureostegui, P.V., Martínez, J.A.A., Martínez, C.R., González, V and Millan, J.V.F.. (2012). "Babesia bigemina: Initial gene identification by Expressed Sequence Tags (EST) analysis of the intraerythrocytic stage". REVISTA MEXICANA DE CIENCIAS PECUARIAS. 3(1):61-87.
2012Estivill, G., Betti, M., Guardado, P., Maestre, A., Arellano, J, Hernández, G, Márquez, A.J. and Galván, F.. (2012). "Functional analysis of site-directed mutants from the active site of higher plant glutamine synthetase". FEBS JOURNAL. 279(1, SI):458-458.
2012Talbi, C., Sánchez, C., Hidalgo-García, A., González, E.M., Arrese-Igor, C., Girard, L, Bedmar, E.J. and Delgado, M.J.. (2012). "Enhanced expression of Rhizobium etli cbb(3) oxidase improves drought tolerance of common bean symbiotic nitrogen fixation". Journal Of Experimental Botany. 63(14):5035-5043. [doi:10.1093/jxb/ers101]22511804
2012Juárez-Verdayes, M.A., González-Uribe, P.M., Peralta, H, Rodríguez-Martínez, S., Jan-Roblero, J., Escamilla-Hernández, R., Cancino-Díaz, M.E. and Cancino-Díaz, J.C.. (2012). "Detection of hssS, hssR, hrtA, and hrtB genes and their expression by hemin in Staphylococcus epidermidis". Canadian Journal Of Microbiology. 58(9):1063-1072. [doi:10.1139/W2012-086]22906238
2012Calvillo, G. and Romero, D. (2012). "The dominance assignment problem". DISCRETE OPTIM. 9(3):149-158. [doi:10.1016/j.disopt.2012.06.001]
2012Thomas-Chollier, M., Darbo, E., Herrmann, C., Defrance, Matthieu Damien Ch., Thieffry, D. and van Helden, J.. (2012). "A complete workflow for the analysis of full-size ChIP-seq (and similar) data sets using peak-motifs". Nature protocols. 7(8):1551-1568. [doi:10.1038/nprot.2012.088]22836136
2012Navarro-Cruz, G., Arellano-Garcia, J, Perea-Arango, I., Álvarez-Berber, L., Marquina-Bahena, S. and Castillo-España, P.. (2012). "Micropropagation and identification of O-palmitoyl-3-O-beta-D-glucoside of beta-sitosterol in the medicinal species Lopezia racemosa". Planta Medica. 78(11):1290-1290.
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2006Huerta-Nuñez, L., Martínez, J, Alcocer, R.L., Ramsey, J.M. and Martínez-Romero, E. (2006). "Diversity of endosymbiotic bacteria of insects belonging to the triatominae". Revista Latinoamericana De Microbiologia. 48(2):212-215.
2006Caballero-Mellado, J., Tenorio Salgado, S., Onofre Lemus, J., Castro González, R., Estrada De Los Santos, P., Paredes Valdez, G., Peña-Cabriales, J.J., Díaz-Mendez, R and Martínez-Aguilar, L. (2006). "Mechanisms involved in the promotion of plant growth expressed by new species of nitrogen-fixer Burkholderia". Revista Latinoamericana De Microbiologia. 48(2):155-156.
2006Marin-Cevada, V, Vargas, VH, Juarez, M, Lopez, VG, Zagada, G, Hernandez, S, Cruz, A, Caballero-Mellado, J, Lopez-Reyes, L, Jimenez-Salgado, T, Carcano-Montiel, M and Fuentes-Ramirez, LE. (2006). "Presence of Pantoea Citrea, causal agent of pink disease, in pineapple fields in Mexico". PLANT PATHOLOGY. 55(2):294-294. [doi:10.1111/j.1365-3059.2005.01331.x]
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2006Salgado, H, Gama-Castro, S, Peralta Gil, Martín, Díaz Peredo, Edgar Ulises, Sánchez Solano, Erika Fabiola, Santos-Zavaleta, A, Martínez-Flores, I, Jiménez Jacinto, Verónica, Bonavides-Martínez, C, Segura Salazar, Juan, Martínez Antonio, Agustino and Collado-Vides, J. (2006). "RegulonDB (version 5.0): Escherichia coli K-12 transcriptional regulatory network, operon organization, and growth conditions.". Nucleic Acids Research. 34(Database issue):394-397. [doi:10.1093/nar/gkj156]16381895
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2006Encarnación, S, Salazar Bustamante, Emmanuel, Martínez-Batallar, AG, Hérnandez, M, Reyes Pérez, Agustín, Contreras-Martínez, S, Vargas, MC, Domínguez Vidaña, Rocío, Gonzaga Jáuregui, Claudia Gabriela, Pérez-Tejada Domínguez, Yolanda, Rivero Zaragoza, María Ricarda and Mora, J. (2006). "GENÓMICA FUNCIONAL EN RIZOBIACEAS". Revista Latinoamericana de Microbiología. 48(2):135-141.
2006Peralta, H. (2006). "Biofertilizantes. Alternativa sustentable para la agricultura en méxico". El Abasto. Panorama de la distribución alimenticia en México. ():190-195.
2006Martínez-Romero, E. (2006). "Detective de bacterias". Descubrimientos y Aportaciones Científicas y Humanísticas Mexicanas en el Siglo XX. (0):-.
2006Silva Romero, Claudia Verónica, Vinuesa, P and Martínez-Romero, E. (2006). "Species delineation and biogeography of Rhizobia: Two case studies". Proceedings of the 12th International Congress on Molecular Plant-Microbe Interactions. 5():319-324.
2006Rogel, MA, Torres, C., Lloret y Sánchez, Lourdes Teresa, Rosenblueth, M, Hernández-Lucas, I., Martínez-Aguilar, L, Martínez Salazar, Jaime Mariano and Martínez-Romero, E. (2006). "Lateral transfer of Rhizobium symbiotic plasmids leading to genomic innovation". Proceedings of the 12th International Congress on Molecular Plant-Microbe Interactions. 5():310-318.
2006Lara Flores, Miguel, Blanco López, María de Lourdes, Silvente Keller, Sonia Teresa, Graham, M.A., Ramírez Romero, Miguel Ángel, Reddy, Pallavolu Maheswara, Hernández, G and Vance, C.. (2006). "Genomic approaches for analysis of legume-Rhizobium symbiotic interactions and nodule metabolism in bean (Phaseolus vulgaris)". Proceedings of the 12th International Congress on Molecular Plant-Microbe Interactions. 5(0):138-143.
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2006Sánchez, F., Quinto, C., López-Lara, IM and Geiger, O. (2006). "Biology of Plant-Microbe Interactions". Proceedings of the 12th International Congress on Molecular Plant-Microbe Interactions. 5():1-717.
2006Martínez Antonio, Agustino, Janga, Sarath Chandra, Salgado, H and Collado-Vides, J. (2006). "Internal-sensing machinery directs the activity of the regulatory network in Escherichia coli". TRENDS IN MICROBIOLOGY. 14(1):22-27. [doi:10.1016/j.tim.2005.11.002]16311037
2006Janga, Sarath Chandra, Lamboy, Warren F., Huerta, Araceli M. and Moreno-Hagelsieb, Gabriel. (2006). "The distinctive signatures of promoter regions and operon junctions across prokaryotes". Nucleic Acids Research. 34(14):3980-3987. [doi:10.1093/nar/gkl563]16914446
2005Le Novere, N., Finney, A., Hucka, M., Bhalla, U.S., Campagne, F., Collado-Vides, J, Crampin, E.J., Halstead, M., Klipp, E., Mendes, P., Nielsen, P., Sauro, H., Shapiro, B., Snoep, J.L., Spence, H.D. and Wanner, B.L.. (2005). "Minimum information requested in the annotation of biochemical models (MIRIAM)". Nature Biotechnology. 23(12):1509-1515. [doi:10.1038/nbt1156]16333295
2005Espinosa, V., Gonzalez, A.D., Vasconcelos, A.T., Huerta Moreno, Araceli and Collado-Vides, J. (2005). "Comparative studies of transcriptional regulation mechanisms in a group of eight gamma-proteobacterial genomes". Journal Of Molecular Biology. 354(1):184-199. [doi:10.1016/j.jmb.2005.09.037]16236313
2005Davila, S, Pinero, D, Bustos, P, Cevallos, MA and Davila, G. (2005). "The mitochondrial genome sequence of the scorpion Centruroides limpidus (Karsch 1879) (Chelicerata; Arachnida)". Gene. 360(2):92-102. [doi:10.1016/j.gene.2005.06.008]16183216
2005Janga, SC, Collado-Vides, J and Moreno-Hagelsieb, G. (2005). "Nebulon: A system for the inference of functional relationships of gene products from the rearrangement of predicted operons". Nucleic Acids Research. 33(8):2521-2530. [doi:10.1093/nar/gki545]15867197
2005Silva Romero, Claudia Verónica, Vinuesa, P, Eguiarte, L.E., Souza, V. and Martínez-Romero, E. (2005). "Evolutionary genetics and biogeographic structure of Rhizobium gallicum sensu lato, a widely distributed bacterial symbiont of diverse legumes". MOLECULAR ECOLOGY. 14(13):4033-4050. [doi:10.1111/j.1365-294X.2005.02721.x]16262857
2005Rojas-Jimenez, K., Sohlenkamp, C, Geiger, O, Martínez-Romero, E, Werner, D. and Vinuesa, P. (2005). "A CIC chloride channel homolog and ornithine-containing membrane lipids of Rhizobium tropici CIAT899 are involved in symbiotic efficiency and acid tolerance". Molecular Plant-Microbe Interactions. 18(11):1175-1185. [doi:10.1094/MPMI-18-1175]16353552
2005Perez-Mendoza, D, Sepulveda, E, Pando, V, Munoz, S, Nogales, J, Olivares, J, Soto, MJ, Herrera-Cervera, JA, Romero, D, Brom, S and Sanjuan, J. (2005). "Identification of the rctA gene, which is required for repression of conjugative transfer of rhizobial symbiotic megaplasmids". Journal Of Bacteriology. 187(21):7341-7350. [doi:10.1128/JB.187.21.7341-7350.2005]16237017
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2005Vinuesa, P, Silva Romero, Claudia Verónica, Lorite, M.J., Izaguirre-Mayoral, M.L., Bedmar, E.J. and Martínez-Romero, E. (2005). "Molecular systematics of Rhizobia based on maximum likelihood and Bayesian phylogenies inferred from rrs, atpD, recA and nifH sequences, and their use in the classification of Sesbania microsymbionts from Venezuelan wetlands". Systematic And Applied Microbiology. 28(8):702-716. [doi:10.1016/j.syapm.2005.05.007]16261860
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2005Ibarra-Junquera, V, Torres, LA, Rosu, HC, Arguello, G and Collado-Vides, J. (2005). "Nonlinear software sensor for monitoring genetic regulation processes with noise and modeling errors". PHYSICAL REVIEW E. 72(1):11919-11919. [doi:10.1103/PhysRevE.72.011919]16090013
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2004Venkova-Canova, T, Soberon, NE, Ramirez-Romero, MA and Cevallos, MA. (2004). "Two discrete elements are required for the replication of a repABC plasmid: an antisense RNA and a stem-loop structure". Molecular Microbiology. 54(5):1431-1444. [doi:10.1111/j.1365-2958.2004.04366.x]15554980
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2004Reis, VM, Estrada-de los Santos, P, Tenorio-Salgado, S, Vogel, J, Stoffels, M, Guyon, S, Mavingui, P, Baldani, VLD, Schmid, M, Baldani, JI, Balandreau, J, Hartmann, A and Caballero-Mellado, J. (2004). "Burkholderia tropica sp nov., a novel nitrogen-fixing, plant-associated bacterium". International Journal Of Systematic And Evolutionary Microbiology. 54(6):2155-2162. [doi:10.1099/ijs.0.02879-0]15545451
2004Resendis-Antonio, O and Collado-Vides, J. (2004). "The growth of random networks as a diffusion process". PHYSICA A-STATISTICAL MECHANICS AND ITS APPLICATIONS. 342(3-4):551-560. [doi:10.1016/j.physa.2004.05.037]
2004Brom, S, Girard, L, Tun Garrido, Cristina Soleda, García-de los Santos, A, Bustos, P, González, V and Romero, D. (2004). "Transfer of the symbiotic plasmid of Rhizobium etli CFN42 requires cointegration with p42a, which may be mediated by site-specific recombination". Journal Of Bacteriology. 186(22):7538-7548. [doi:10.1128/JB.186.22.7538-7548.2004]15516565
2004Hernández Lucas, Ismael, Rogel, MA, Segovia, L., Rojas-Jimenez, K. and Martínez-Romero, E. (2004). "Phylogenetic relationships of Rhizobia based on citrate synthase gene sequences". Systematic And Applied Microbiology. 27(6):703-706. [doi:10.1078/0723202042369893]15612628
2004Encarnación, S, Garcia, Juan, Hérnandez, M, Vargas, MC, Contreras, Sandra and Mora, J. (2004). "Protein expression during biofilm formation in Rhizobium etli and Sinorhizobium meliloti". MOLECULAR & CELLULAR PROTEOMICS. 3(10, S):150-150.
2004Vargas, MC, Encarnación, S, Girard, L, Reyes, A., Mora, Y. and Mora, J. (2004). "Physiological and proteome characterizations of oxidative-stress response in Rhizobium etli during free life and symbiosis with Phaseolus vulgaris.". MOLECULAR & CELLULAR PROTEOMICS. 3(10, S):160-160.
2004Medrano Soto, Luis Arturo, Moreno Hagelsieb, Gabriel, Vinuesa, P, Christen, J.A. and Collado-Vides, J. (2004). "Successful lateral transfer requires codon usage compatibility between foreign genes and recipient genomes". MOLECULAR BIOLOGY AND EVOLUTION. 21(10):1884-1894. [doi:10.1093/molbev/msh202]15240837
2004Goris, J, De Vos, P, Caballero-Mellado, J, Park, J, Falsen, E, Quensen, JF, Tiedje, JM and Vandamme, P. (2004). "Classification of the biphenyl- and polychlorinated biphenyl-degrading strain LB400(T) and relatives as Burkholderia xenovorans sp nov.". International Journal Of Systematic And Evolutionary Microbiology. 54(5):1677-1681. [doi:10.1099/ijs.0.63101-0]15388727
2004Costa, J.L., Martínez-Romero, E and Lindblad, P.. (2004). "Sequence based data supports a single Nostoc strain in individual coralloid roots of cycads". Fems Microbiology Ecology. 49(3):481-487. [doi:10.1016/j.femsec.2004.05.001]19712296
2004Gao, JL, Weissenmayer, B, Taylor, AM, Thomas-Oates, J, López-Lara, IM and Geiger, O. (2004). "Identification of a gene required for the formation of lyso-ornithine lipid, an intermediate in the biosynthesis of ornithine-containing lipids". Molecular Microbiology. 53(6):1757-1770. [doi:10.1111/j.1365-2958.2004.04240.x]15341653
2004Sepulveda, Edgardo, Perez-Mendoza, Daniel, Munoz, Socorro, Ramirez-Romero, Miguel A., Soto, Maria Jose, Cervantes, Laura, Herrera-Cervera, Jose A., López-Lara, IM, Geiger, O, Sanuan, Juan, Brom, S and Romero, D. (2004). "Identification of functional mob regions in Rhizobium etli: Evidence for self-transmissibility of the symbiotic plasmid pRetCFN42d". Journal Of Bacteriology. 186(17):5753-5761. [doi:10.1128/JB.186.17.5753-5761.2004]15317780
2004Caballero-Mellado, J, Martínez-Aguilar, L, Paredes-Valdez, G and Estrada-de los Santos, P. (2004). "Burkholderia unamae sp nov., an N-2-fixing rhizospheric and endophytic species". International Journal Of Systematic And Evolutionary Microbiology. 54(4):1165-1172. [doi:10.1099/ijs.0.02951-0]15280286
2004Peralta, H, Mora, Y, Salazar, E, Encarnación, S, Palacios, R and Mora, J. (2004). "Engineering the nifH promoter region and abolishing poly-ß -hydroxybutyrate accumulation in Rhizobium etli enhance nitrogen fixation in symbiosis with Phaseolus vulgaris". Applied And Environmental Microbiology. 70(6):3272-3281. [doi:10.1128/AEM.70.6.3272-3281.2004]15184121
2004Geiger, O, Sohlenkamp, C, Martinez-Morales, F, Gao, JL, Zavaleta-Pastor, M and López-Lara, IM. (2004). "Regulation of membrane lipid biosynthesis in eubacteria". FASEB JOURNAL. 18(8, S):3-3.
2004Soberon, N, Venkova-Canova, T, Ramirez-Romero, MA, Tellez-Sosa, J and Cevallos, MA. (2004). "Incompatibility and the partitioning site of the repABC basic replicon of the symbiotic plasmid from Rhizobium etli". Plasmid. 51(3):203-216. [doi:10.1016/j.plasmid.2004.01.005]15109827
2004Rosenblueth, M and Martínez-Romero, E. (2004). "Rhizobium etli maize populations and their competitivenes for roof colonization". Archives Of Microbiology. 181(5):337-344. [doi:10.1007/s00203-004-0661-9]15024554
2004Batista, C.V.F., Del Pozo, L., Zamudio, F.Z., Contreras-Martínez, S, Becerril, B., Wanke, E. and Possani, L.D.. (2004). "Proteomics of the venom from the Amazonian scorpion Tityus Cambridgei and the role of prolines on mass spectrometry analysis of toxins". JOURNAL OF CHROMATOGRAPHY B-ANALYTICAL TECHNOLOGIES IN THE BIOMEDICAL AND LIFE SCIENCES. 803(1):55-66. [doi:10.1016/j.jchromb.2003.09.002]15025998
2004Lamboy, WF and Moreno-Hagelsieb, G. (2004). "A new method of solution for the occupancy problem and its application to operon size prediction". JOURNAL OF THEORETICAL BIOLOGY. 227(3):315-322. [doi:10.1016/j.jtbi.2003.11.009]15019498
2004Oviedo, N.A., Salgado, H, Collado-Vides, J and Guarneros, G.. (2004). "Distribution of minigenes in the bacteriophage lambda chromosome". Gene. 329(1-2):115-124. [doi:10.1016/j.gene.2003.12.031]15033534
2004Sohlenkamp, C, de Rudder, KEE and Geiger, O. (2004). "Phosphatidylethanolamine Is Not Essential for Growth of Sinorhizobium meliloti on Complex Culture Media". Journal Of Bacteriology. 186(6):1667-1677. [doi:10.1128/JB.186.6.1667-1677.2004]14996797
2004Dunn, MF, Araiza, G and Mora, J. (2004). "Biochemical characterization of a Rhizobium etli monovalent cation-stimulated acyl-coenzyme A carboxylase with a high substrate specificity constant for propionyl-coenzyme A". MICROBIOLOGY-SGM. 150(2):399-406. [doi:10.1099/mic.0.26779-0]14766918
2004Rosenblueth, M, Martínez Martínez, Lucía Lourdes, Silva, J. and Martínez-Romero, E. (2004). "Klebsiella variicola, A Novel Species with Clinical and Plant-Associated Isolates". Systematic And Applied Microbiology. 27(1):27-35. [doi:10.1078/0723-2020-00261]15053318
2004Salgado, H, Gama-Castro, S, Martínez Antonio, Agustino, Díaz Peredo, Edgar Ulises, Sánchez Solano, Erika Fabiola, Peralta Gil, Martín, García-Alonso, D, Jiménez Jacinto, Verónica, Santos-Zavaleta, A, Bonavides-Martínez, C and Collado-Vides, J. (2004). "RegulonDB (version 4.0): Transcriptional regulation, operon organization and growth conditions in Escherichia coli K-12". Nucleic Acids Research. 32(DATABASE ISS.):303-306. [doi:10.1093/nar/gkh140]14681419
2004Karp, PD, Arnaud, M, Collado-Vides, J, Ingraham, J, Paulsen, IT and Saier, MH. (2004). "The E. coli EcoCyc database: No longer just a metabolic pathway database". Asm News. 70(1):25-30.
2004Janga, SC and Moreno-Hagelsieb, G. (2004). "Conservation of adjacency as evidence of paralogous operons". Nucleic Acids Research. 32(18):5392-5397. [doi:10.1093/nar/gkh882]15477389
2003Martínez Antonio, Agustino, Salgado, H, Gama-Castro, S, Gutiérrez Ríos, Rosa María, Jiménez Jacinto, Verónica and Collado-Vides, J. (2003). "Environmental Conditions and Transcriptional Regulation in Escherichia coli: A Physiological Integrative Approach". BIOTECHNOLOGY AND BIOENGINEERING. 84(7):743-749. [doi:10.1002/bit.10846]14708114
2003Pérez O., J., Pazos R., R.A., Romero, D, Santaolaya S., R., Rodriguez O., G. and Sosa S., V.. (2003). "Adaptive and scalable allocation of data-objects in the web". LECT NOTES COMPUT SC. 2667():134-143.
2003Wang, E.T., Kan, F.L., Tan, Z.Y., Toledo García, Icela Ivonne, Chen, W.X. and Martínez-Romero, E. (2003). "Diverse Mesorhizobium plurifarium populations native to Mexican soils". Archives Of Microbiology. 180(6):444-454. [doi:10.1007/s00203-003-0610-z]14576977
2003Jauregui, R, Abreu-Goodger, C, Moreno-Hagelsieb, G, Collado-Vides, J and Merino, E. (2003). "Conservation of DNA curvature signals in regulatory regions of prokaryotic genes". Nucleic Acids Research. 31(23):6770-6777. [doi:10.1093/nar/gkg882]14627810
2003Martinez-Morales, F, Schobert, M, López-Lara, IM and Geiger, O. (2003). "Pathways for phosphatidylcholine biosynthesis in bacteria". MICROBIOLOGY-SGM. 149(12):3461-3471. [doi:10.1099/mic.0.26522-0]14663079
2003Martinez, L, Caballero-Mellaod, J, Orozco, J and Martínez-Romero, E. (2003). "Diazotrophic bacteria associated with banana (Musa spp.)". PLANT AND SOIL. 257(1):35-47. [doi:10.1023/A:1026283311770]
2003Medina, G., Juarez, K., Díaz-Mendez, R and Soberon-Chavez, Gloria. (2003). "Transcriptional regulation of pseudomonas Aeruginosa rhlR, encoding a quorum-sensing regulatory protein". MICROBIOLOGY-SGM. 149(11):3073-3081. [doi:10.1099/mic.0.26282-0]14600219
2003Gutiérrez Ríos, Rosa María, Rosenblueth, D.A., Loza, José Antonio, Huerta Moreno, Araceli, Glasner, J.D., Blattner, F.R. and Collado-Vides, J. (2003). "Regulatory network of Escherichia coli: Consistency between literature knowledge and microarray profiles". GENOME RESEARCH. 13(11):2435-2443. [doi:10.1101/gr.1387003]14597655
2003Munoz-Rojas, J and Caballero-Mellado, J. (2003). "Population dynamics of Gluconacetobacter diazotrophicus in sugarcane cultivars and its effect on plant growth". Microbial Ecology. 46(4):454-464. [doi:10.1007/s00248-003-0110-3]14722690
2003Huerta, AM and Collado-Vides, J. (2003). "Sigma70 promoters in Escherichia coli: Specific transcription in dense regions of overlapping promoter-like signals". Journal Of Molecular Biology. 333(2):261-278. [doi:10.1016/j.jmb.2003.07.017]14529615
2003Perret, X., Kobayashi, H. and Collado-Vides, J. (2003). "Regulation of expression of symbiotic genes in Rhizobium sp. NGR234". INDIAN JOURNAL OF EXPERIMENTAL BIOLOGY. 41(10):1101-1113. 15242276
2003Martinez-Antonio, A and Collado-Vides, J. (2003). "Identifying global regulators in transcriptional regulatory networks in bacteria". Current Opinion In Microbiology. 6(5):482-489. [doi:10.1016/j.mib.2003.09.002]14572541
2003Young, J.M., Kuykendall, L.D., Martínez-Romero, E, Kerr, A. and Sawada, H.. (2003). "Classification and nomenclature of Agrobacterium and Rhizobium - A reply to Farrand et al. (2003)". International Journal Of Systematic And Evolutionary Microbiology. 53(5):1689-1695. [doi:10.1099/ijs.0.02762-0]13130069
2003Collado-Vides, J, Medrano Soto, Luis Arturo and Tusié-Luna, M.T.. (2003). "With the finished human genome in hand, what next?". Genome Biology. 4(7):328-328. [doi:10.1186/gb-2003-4-7-328]12844356
2003Guo, XW, Flores, M, Mavingui, P, Fuentes, SI, Hernández, G, Davila, G and Palacios, R. (2003). "Natural genomic design in Sinorhizobium meliloti novel genomic architectures". GENOME RESEARCH. 13(8):1810-1817. [doi:10.1101/gr.1260903]12902376
2003Desnoues, N., Lin, M., Guo, XW, Ma, L.Y., Carreno-Lopez, R. and Elmerich, C.. (2003). "Nitrogen fixation genetics and regulation in a pseudomonas Stutzeri strain associated with rice". MICROBIOLOGY-SGM. 149(8):2251-2262. [doi:10.1099/mic.0.26270-0]12904565
2003González, V, Bustos, P, Ramírez Romero, Miguel Ángel, Medrano Soto, Luis Arturo, Salgado, H, Hernández González, Ismael Luis, Hernández Celis, Juan Carlos, Quintero Hernández, Verónica, Moreno Hagelsieb, Gabriel, Girard, L, Rodríguez, O, Flores López, Margarita, Cevallos, MA, Collado-Vides, J, Romero, D and Dávila Ramos, José Guillermo. (2003). "The mosaic structure of the symbiotic plasmid of Rhizobium etli CFN42 and its relation to other symbiotic genome compartments.". Genome Biology. 4(6):R36-. [doi:10.1186/gb-2003-4-6-r36]12801410
2003Willems, A., Fernandez-Lopez, M., Munoz-Adelantado, E., Goris, J., De Vos, P., Martínez-Romero, E, Toro, N. and Gillis, M.. (2003). "Description of new Ensifer strains from nodules and proposal to transfer Ensifer adhaerens Casida 1982 to Sinorhizobium as Sinorhizobium adhaerens comb. nov. Request for an Opinion". International Journal Of Systematic And Evolutionary Microbiology. 53(4):1207-1217. [doi:10.1099/ijs.0.02264-0]12892151
2003López-Lara, IM, Sohlenkamp, C and Geiger, O. (2003). "Membrane lipids in plant-associated bacteria: Their biosyntheses and possible functions". Molecular Plant-Microbe Interactions. 16(7):567-579. [doi:10.1094/MPMI.2003.16.7.567]12848422
2003Djordjevic, M.A., Chen, H.C., Natera, S., Van Noorden, G., Menzel, C., Taylor, S., Renard, C., Geiger, O and Weiller, G.F.. (2003). "A global analysis of protein expression profiles in Sinorhizobium meliloti: Discovery of new genes for nodule occupancy and stress adaptation". Molecular Plant-Microbe Interactions. 16(6):508-524. [doi:10.1094/MPMI.2003.16.6.508]12795377
2003Silvente, S, Camas, A and Lara Flores, Miguel. (2003). "Molecular cloning of the cDNA encoding aspartate aminotransferase from bean root nodules and determination of its role in nodule nitrogen metabolism". Journal Of Experimental Botany. 54(387):1545-1551. [doi:10.1093/jxb/erg161]12730270
2003Encarnación, S, Guzman, Y, Dunn, MF, Hernandez, M, Vargas, MD and Mora, J. (2003). "Proteome analysis of aerobic and fermentative metabolism in Rhizobium etli CE3". Proteomics. 3(6):1077-1085. [doi:10.1002/pmic.200300427]12833533
2003Martínez-Romero, E. (2003). "Diversity of Rhizobium-Phaseolus vulgaris symbiosis: Overview and perspectives". PLANT AND SOIL. 252(1):11-23. [doi:10.1023/A:1024199013926]
2003Broughton, WJ, Hernández, G, Blair, M, Beebe, S, Gepts, P and Vanderleyden, J. (2003). "Beans (Phaseolus spp.) - model food legumes". PLANT AND SOIL. 252(1):55-128. [doi:10.1023/A:1024146710611]
2003Vargas, MD, Encarnación, S, Dávalos, A, Reyes-Perez, A, Mora, Y, García-de los Santos, A, Brom, S and Mora, J. (2003). "Only one catalase, katG, is detectable in Rhizobium etli, and is encoded along with the regulator OxyR on a plasmid replicon". MICROBIOLOGY-SGM. 149(5):1165-1176. [doi:10.1099/mic.0.25909-0]12724378
2003Romero, D and Zertuche, F.. (2003). "The asymptotic number of attractors in the random map model". J PHYS A-MATH GEN. 36(13):3691-3700. [doi:10.1088/0305-4470/36/13/304]
2003Snoeck, C., Verreth, C., Hernández Lucas, Ismael, Martínez-Romero, E and Vanderleyden, J.. (2003). "Identification of a third sulfate activation system in Sinorhizobium sp. strain BR816: The CysDN sulfate activation complex". Applied And Environmental Microbiology. 69(4):2006-2014. [doi:10.1128/AEM.69.4.2006-2014.2003]12676676
2003Uhde-Stone, C., Zinn, K.E., Ramírez, M, Li, A.G., Vance, C.P. and Allan, D.L.. (2003). "Nylon filter arrays reveal differential gene expression in proteoid roots of white lupin in response to phosphorus deficiency". Plant Physiology. 131(3):1064-1079. [doi:10.1104/pp.102.016881]12644659
2003Tun-Garrido, C, Bustos, P, González, V and Brom, S. (2003). "Conjugative transfer of p42a from Rhizobium etli CFN42, which is required for mobilization of the symbiotic plasmid, is regulated by quorum sensing". Journal Of Bacteriology. 185(5):1681-1692. [doi:10.1128/JB.185.5.1681-1692.2003]12591886
2003Suarez, R, Marquez, J, Shishkova, S and Hernández, G. (2003). "Overexpression of alfalfa cytosolic glutamine synthetase in nodules and flowers of transgenic Lotus japonicus plants". Physiologia Plantarum. 117(3):326-336. [doi:10.1034/j.1399-3054.2003.00053.x]12654032
2003Cordoba, E, Shishkova, S, Vance, CP and Hernández, G. (2003). "Antisense inhibition of NADH glutamate synthase impairs carbon/nitrogen assimilation in nodules of alfalfa (Medicago sativa L.)". PLANT JOURNAL. 33(6):1037-1049. [doi:10.1046/j.1365-313X.2003.01686.x]12631328
2003Sohlenkamp, C, López-Lara, IM and Geiger, O. (2003). "Biosynthesis of phosphatidylcholine in bacteria". Progress In Lipid Research. 42(2):115-162. [doi:10.1016/S0163-7827(02)00050-4]12547654
2003Valencia-Cantero, E, Pena-Cabriales, JJ and Martínez-Romero, E. (2003). "The corrosion effects of sulfate- and ferric-reducing bacterial consortia on steel". GEOMICROBIOLOGY JOURNAL. 20(2):157-169. [doi:10.1080/01490450390193264]
2003Toledo García, Icela Ivonne, Lloret y Sánchez, Lourdes Teresa and Martínez-Romero, E. (2003). "Sinorhizobium americanus sp. nov., a New Sinorhizobium species nodulating native Acacia spp. in Mexico". Systematic And Applied Microbiology. 26(1):54-64. [doi:10.1078/072320203322337317]12747410
2003Silva, C, Vinuesa, P, Eguiarte, LE, Martínez-Romero, E and Souza, V. (2003). "Rhizobium etli and Rhizobium gallicum nodulate common bean (Phaseolus vulgaris) in a traditionally managed milpa plot in Mexico: Population genetics and biogeographic implications". Applied And Environmental Microbiology. 69(2):884-893. [doi:10.1128/AEM.69.2.884-893.2003]12571008
2003Silvente, S, Camas, A and Lara Flores, Miguel. (2003). "Heterogeneity of sucrose synthase genes in bean (Phaseolus vulgaris L.): evidence for a nodule-enhanced sucrose synthase gene". Journal Of Experimental Botany. 54(383):749-755. [doi:10.1097/jxb/erg086]12554718
2003Vinuesa, P, Neumann-Silkow, F., Pacios-Bras, C., Spaink, H.P., Martínez-Romero, E and Werner, D.. (2003). "Genetic analysis of a pH-regulated operon from Rhizobium tropici CIAT899 involved in acid tolerance and nodulation competitiveness". Molecular Plant-Microbe Interactions. 16(2):159-168. [doi:10.1094/MPMI.2003.16.2.159]12575750
2003Jahn, OJ, Davila, G, Romero, D and Noel, KD. (2003). "BacS: An abundant bacteroid protein in Rhizobium etli whose expression ex planta requires nifA". Molecular Plant-Microbe Interactions. 16(1):65-73. [doi:10.1094/MPMI.2003.16.1.65]12580283
2003Valderrama, B, Oliver, P, Medrano-Soto, A and Vazquez-Duhalt, R. (2003). "Evolutionary and structural diversity of fungal laccases". ANTONIE VAN LEEUWENHOEK INTERNATIONAL JOURNAL OF GENERAL AND MOLECULAR; MICROBIOLOGY. 84(4):289-299. [doi:10.1023/A:1026070122451]14574106
2002Sohlenkamp, C, Wood, CC, Roeb, GW and Udvardi, MK. (2002). "Characterization of Arabidopsis AtAMT2, a high-affinity ammonium transporter of the plasma membrane". Plant Physiology. 130(4):1788-1796. [doi:10.1104/pp.008599]12481062
2002Moreno Hagelsieb, Gabriel and Collado-Vides, J. (2002). "A powerful non-homology method for the prediction of operons in prokaryotes.". Bioinformatics. 18 Suppl 1():329-336. 12169563
2002Degrave, W.M., Vargas, R., Alvarez, F., Collado-Vides, J, Nunez, L., Ramirez, J.L. and Grau, O.. (2002). "Towards a bioinformatics network for Latin America and the Caribbean (LACBioNet).". Applied Bioinformatics. 1(1):53-56. 15130857
2002Cevallos, MA, Porta, H, Izquierdo, J, Tun-Garrido, C, Garcia-de-los-Santos, A, Davila, G and Brom, S. (2002). "Rhizobium etli CFN42 contains at least three plasmids of the repABC family: A structural and evolutionary analysis". Plasmid. 48(2):104-116. [doi:10.1016/S0147-619X(02)00119-1]12383728
2002Quintero, V, Cevallos, MA and Davila, G. (2002). "A site-specific recombinase (RinQ) is required to exert incompatibility towards the symbiotic plasmid of Rhizobium etli". Molecular Microbiology. 46(4):1023-1032. [doi:10.1046/j.1365-2958.2002.03205.x]12421308
2002Hernandez-Lucas, I, Mavingui, P, Finan, T, Chain, P and Martínez-Romero, E. (2002). "in vivo cloning strategy for Rhizobium plasmids". Biotechniques. 33(4):782-788. [doi:10.2144/02334st01]12398186
2002García-de los Santos, A, Morales, A, Baldoma, L, Clark, SRD, Brom, S, Yost, CK, Hernandez-Lucas, I, Aguilar, J and Hynes, MF. (2002). "The glcB locus of Rhizobium leguminosarum VF39 encodes an arabinose-inducible malate synthase". Canadian Journal Of Microbiology. 48(10):922-932. [doi:10.1139/w02-091]12489782
2002Wang, E.T., Rogel, MA, Sui, X.H., Chen, W.X., Martínez-Romero, E and van Berkum, P.. (2002). "Mesorhizobium amorphae, a rhizobial species that nodulates Amorpha fruticosa, is native to American soils". Archives Of Microbiology. 178(4):301-305. [doi:10.1007/s00203-002-0448-9]12209264
2002Weissenmayer, B, Gao, JL, López-Lara, IM and Geiger, O. (2002). "Identification of a gene required for the biosynthesis of ornithine-derived lipids". Molecular Microbiology. 45(3):721-733. [doi:10.1046/j.1365-2958.2002.03043.x]12139618
2002Wang, E.T., Tan, Z.Y., Willems, A., Fernandez-Lopez, M., Reinhold-Hurek, B. and Martínez-Romero, E. (2002). "Sinorhizobium morelense sp. nov., a Leucaena leucocephala-associated bacterium that is highly resistant to multiple antibiotics". International Journal Of Systematic And Evolutionary Microbiology. 52(5):1687-1693. [doi:10.1099/ijs.0.01954-0]12361275
2002Collado-Vides, J, Moreno-Hagelsieb, G. and Medrano-Soto, A.. (2002). "Microbial computational genomics of gene regulation". PURE AND APPLIED CHEMISTRY. 74(6):899-905.
2002Acosta-Durán, C. and Martínez-Romero, E. (2002). "Diversity of Rhizobia from nodules of the leguminous tree Gliricidia sepium, a natural host of Rhizobium tropici". Archives Of Microbiology. 178(2):161-164. [doi:10.1007/s00203-002-0433-3]12115061
2002de Daruvar, A, Collado-Vides, J and Valencia, A. (2002). "Analysis of the cellular functions of Escherichia coli operons and their conservation in Bacillus Subtilis". Journal Of Molecular Evolution. 55(2):211-221. [doi:10.1007/s00239-002-2317-1]12107597
2002Tellez-Sosa, J, Soberon, N, Vega-Segura, A, Torres-Marquez, ME and Cevallos, MA. (2002). "The Rhizobium etli cyaC product: Characterization of a novel adenylate cyclase class". Journal Of Bacteriology. 184(13):3560-3568. [doi:10.1128/JB.184.13.3560-3568.2002]12057950
2002Silvente Keller, Sonia Teresa, Blanco López, María de Lourdes, Camas, Alberto, Ortega, José Luis, Ramírez, M and Lara Flores, Miguel. (2002). "Rhizobium etli mutant modulates carbon and nitrogen metabolism in Phaseolus vulgaris nodules". Molecular Plant-Microbe Interactions. 15(7):728-733. [doi:10.1094/MPMI.2002.15.7.728]12118889
2002Ramírez Alfonsín, J.L. and Romero, D. (2002). "Embeddability of the combinohedron". DISCRETE MATH. 254(1-3):473-483. [doi:10.1016/S0012-365X(01)00298-9]
2002Collado-Vides, J, Moreno-Hagelsieb, G and Medrano-Soto, A. (2002). "Microbial computational genomics of gene regulation". PURE AND APPLIED CHEMISTRY. 74(6):899-905. [doi:10.1351/pac200274060899]
2002Brom, S, Girard, L, García-de los Santos, A, Sanjuan-Pinilla, J.M., Olivares, J. and Sanjuan, J.. (2002). "Conservation of plasmid-encoded traits among bean-nodulating Rhizobium species". Applied And Environmental Microbiology. 68(5):2555-2561. [doi:10.1128/AEM.68.5.2555-2561.2002]11976134
2002Camas, A, Cardenas, L, Quinto, C and Lara Flores, Miguel. (2002). "Expression of different calmodulin genes in bean (Phaseolus vulgaris L.): Role of nod factor on calmodulin gene regulation". Molecular Plant-Microbe Interactions. 15(5):428-436. [doi:10.1094/MPMI.2002.15.5.428]12036273
2002Dunn, MF, Araiza, G, Encarnación, S, Vargas, MC and Mora, J. (2002). "Effect of aniA (carbon flux regulator) and phaC (poly-ß-hydroxybutyrate synthase) mutations on pyruvate metabolism in Rhizobium etli". Journal Of Bacteriology. 184(8):2296-2299. [doi:10.1128/JB.184.8.2296-2299.2002]11914362
2002Encarnación, S, Vargas, MC, Dunn, MF, Dávalos, A, Mendoza, G, Mora, Y and Mora, J. (2002). "aniA regulates reserve polymer accumulation and global protein expression in Rhizobium etli". Journal Of Bacteriology. 184(8):2287-2295. [doi:10.1128/JB.184.8.2287-2295.2002]11914361
2002Huerta, AM, Glasner, JD, Gutierrez-Rios, RM, Blattner, FR and Collado-Vides, J. (2002). "GETools: gene expression tool for analysis of transcriptome experiments in E. coli". TRENDS IN GENETICS. 18(4):217-218. [doi:10.1016/S0168-9525(01)02620-8]
2002Huerta, A.M., Glasner, J.D., Gutiérrez-Ríos, R.M., Blattner, F.R. and Collado-Vides, J. (2002). "Erratum: Common pitfalls in bioinformatics based analyses: Look before you leap (Trends in Genetics (2001) 17 (541-545) PII S0168952502026628)". TRENDS IN GENETICS. 18(4):218-218. [doi:10.1016/S0168-9525(02)02662-8]
2002Castillo, P, Zamilpa, A, Marquez, J, Hernández, G, Lara Flores, Miguel and Alvarez, L. (2002). "Comparative study of differentiation levels and valepotriate content of in vitro cultures and regenerated and wild plants of Valeriana edulis ssp procera". JOURNAL OF NATURAL PRODUCTS. 65(4):573-575. [doi:10.1021/np0104267]11975504
2002Estrada, P, Mavingui, P, Cournoyer, B, Fontaine, F, Balandreau, J and Caballero-Mellado, J. (2002). "A N-2-fixing endophytic Burkholderia sp associated with maize plants cultivated in Mexico". Canadian Journal Of Microbiology. 48(4):285-294. [doi:10.1139/w02-023]12030700
2002Benítez Bellón, Esperanza, Moreno Hagelsieb, Gabriel and Collado-Vides, J. (2002). "Evaluation of thresholds for the detection of binding sites for regulatory proteins in Escherichia coli K12 DNA.". Genome Biology. 3(3):RESEARCH0013-. 11897025
2002Geiger, O and López-Lara, IM. (2002). "Rhizobial acyl carrier proteins and their roles in the formation of bacterial cell-surface components that are required for the development of nitrogen-fixing root nodules on legume hosts". Fems Microbiology Letters. 208(2):153-162. [doi:10.1016/S0378-1097(02)00478-0]11959430
2002Lira-Ruan, V, Ross, EJH, Sarath, G, Klucas, RV and Arredondo-Peter, R. (2002). "Mapping and analysis of a hemoglobin gene family from Oryza sativa". PLANT PHYSIOLOGY AND BIOCHEMISTRY. 40(3):199-202. [doi:10.1016/S0981-9428(02)01365-7]
2002Moreno Hagelsieb, Gabriel and Collado-Vides, J. (2002). "Operon conservation from the point of view of Escherichia coli, and inference of functional interdependence of gene products from genome context". In Silico Biology: Journal of Biological Systems Modeling and Multi-Scale Simulation. 2(2):87-95. 12066843
2002del Río G., Santamaria, RI, Díaz M.L., Soberón Mainero, Xavier and López-Munguía, Agustín. (2002). "Novel and potential applications of alpha-amylases in the food industry". Engineering and Food for the 21st Century. ():913-925.
2002Karp, PD, Riley, M, Saier, M, Paulsen, IT, Collado-Vides, J, Paley, SM, Pellegrini-Toole, A, Bonavides-Martínez, C and Gama-Castro, S. (2002). "The EcoCyc database". Nucleic Acids Research. 30(1):56-58. [doi:10.1093/nar/30.1.56]11752253
2002Mavingui, P, Flores, M, Guo, XW, Davila, G, Perret, X, Broughton, WJ and Palacios, R. (2002). "Dynamics of genome architecture in Rhizobium sp strain NGR234". Journal Of Bacteriology. 184(1):171-176. [doi:10.1128/JB.184.1.171-176.2002]11741857
2002Falcon, LI, Escobar-Briones, E and Romero, D. (2002). "Nitrogen fixation patterns displayed by cyanobacterial consortia in Alchichica crater-lake, Mexico". Hydrobiologia. 467(1-3):71-78. [doi:10.1023/A:1014984629985]
2002Sessitsch, A, Howieson, JG, Perret, X, Antoun, H and Martínez-Romero, E. (2002). "Advances in Rhizobium research". CRITICAL REVIEWS IN PLANT SCIENCES. 21(4):323-378. [doi:10.1080/0735-260291044278]
2001López, O., Morera, C., Miranda-Ríos, J., Girard, L, Romero, D and Soberón Chávez, Mario. (2001). "Regulation of gene expression in response to oxygen in Rhizobium etli: Role of FnrN in fixNOQP expression and in symbiotic nitrogen fixation". Journal Of Bacteriology. 183(24):6999-7006. [doi:10.1128/JB.183.24.6999-7006.2001]11717256
2001Díaz-Leal, H., Martínez-Bernal, J. and Romero, D. (2001). "Dimension of the fixed point set of a nilpotent endomorphism on the flag variety". BOL SOC MAT MEX. 7(1):23-33.
2001Dunn, MF, Araiza, G and Finan, TM. (2001). "Cloning and characterization of the pyruvate carboxylase from Sinorhizobium meliloti Rm1021". Archives Of Microbiology. 176(5):355-363. [doi:10.1007/s002030100336]11702077
2001Arechaga-Ocampo, E, Saenz-Rivera, J, Sarath, G, Klucas, RV and Arredondo-Peter, R. (2001). "Cloning and expression analysis of hemoglobin genes from maize (Zea mays ssp mays) and teosinte (Zea mays ssp parviglumis)". BIOCHIMICA ET BIOPHYSICA ACTA-GENE STRUCTURE AND EXPRESSION. 1522(1):1-8. [doi:10.1016/S0167-4781(01)00288-3]11718894
2001Chichkova, S, Arellano, J, Vance, CP and Hernández, G. (2001). "Transgenic tobacco plants that overexpress alfalfa NADH-glutamate synthase have higher carbon and nitrogen content". Journal Of Experimental Botany. 52(364):2079-2087. [doi:10.1093/jexbot/52.364.2079]11604446
2001López-Lara, IM and Geiger, O. (2001). "Novel pathway for phosphatidylcholine biosynthesis in bacteria associated with eukaryotes". JOURNAL OF BIOTECHNOLOGY. 91(2-3):211-221. [doi:10.1016/S0168-1656(01)00331-5]11566392
2001Gao, JL, Terefework, ZD, Chen, WX and Lindstrom, K. (2001). "Genetic diversity of Rhizobia isolated from Astragalus adsurgens growing in different geographical regions of China". JOURNAL OF BIOTECHNOLOGY. 91(2-3, SI):155-168. [doi:10.1016/S0168-1656(01)00337-6]11566387
2001Gutierrez-Zamora, ML and Martínez-Romero, E. (2001). "Natural endophytic association between Rhizobium etli and maize (Zea mays L.)". JOURNAL OF BIOTECHNOLOGY. 91(2-3):117-126. [doi:10.1016/S0168-1656(01)00332-7]11566384
2001Ramirez-Romero, MA, Tellez-Sosa, J, Barrios, H, Perez-Oseguera, A, Rosas, V and Cevallos, MA. (2001). "RepA negatively autoregulates the transcription of the repABC operon of the Rhizobium etli symbiotic plasmid basic replicon". Molecular Microbiology. 42(1):195-204. [doi:10.1046/j.1365-2958.2001.02621.x]11679078
2001Batista, S, Catalan, AI, Hernandez-Lucas, I, Martínez-Romero, E, Aguilar, OM and Martinez-Drets, G. (2001). "Identification of a system that allows a Rhizobium tropici dctA mutant to grow on succinate, but not on other C4-dicarboxylates". Canadian Journal Of Microbiology. 47(6):509-518. [doi:10.1139/cjm-47-6-509]11467726
2001Pérez-Rueda, E and Collado-Vides, J. (2001). "Common history at the origin of the position - Function correlation in transcriptional regulators in archaea and bacteria". Journal Of Molecular Evolution. 53(3):172-179. [doi:10.1007/s002390010207]11523004
2001Rogel, MA, Hernández Lucas, Ismael, Kuykendall, L.D., Balkwill, D.L. and Martínez-Romero, E. (2001). "Nitrogen-Fixing Nodules with Ensifer adhaerens Harboring Rhizobium tropici Symbiotic Plasmids". Applied And Environmental Microbiology. 67(7):3264-3268. [doi:10.1128/AEM.67.7.3264-3268.2001]11425750
2001Ramírez-Benítez, M.D., Moreno-Hagelsieb, G and Almagro, J.C.. (2001). "VIR.II: a new interface with the antibody sequences in the Kabat database". Biosystems. 61(2-3):125-131. [doi:10.1016/S0303-2647(01)00166-6]11716972
2001Lira Ruan, Verónica, Sarath, G., Klucas, R.V. and Arredondo Peter, José Raúl. (2001). "Synthesis of hemoglobins in rice (Oryza sativa var. Jackson) plants growing in normal and stress conditions". Plant Science. 161(2):279-287. [doi:10.1016/S0168-9452(01)00411-3]11448759
2001Fuentes-Ramirez, LE, Bustillos-Cristales, R, Tapia-Hernandez, A, Jimenez-Salgado, T, Wang, ET, Martínez-Romero, E and Caballero-Mellado, J. (2001). "Novel nitrogen-fixing acetic acid bacteria, Gluconacetobacter johannae sp. nov. and Gluconacetobacter azotocaptans sp. nov., associated with coffee plants". International Journal Of Systematic And Evolutionary Microbiology. 51(4):1305-1314. [doi:10.1099/00207713-51-4-1305]11491326
2001Estrada-De los Santos, P, Bustillos-Cristales, R and Caballero-Mellado, J. (2001). "Burkholderia, a genus rich in plant-associated nitrogen fixers with wide environmental and geographic distribution". Applied And Environmental Microbiology. 67(6):2790-2798. [doi:10.1128/AEM.67.6.2790-2798.2001]11375196
2001Tan, K., Moreno Hagelsieb, Gabriel, Collado-Vides, J and Stormo, G.D.. (2001). "A comparative genomics approach to prediction of new members of regulons". GENOME RESEARCH. 11(4):566-584. [doi:10.1101/gr.149301]11282972
2001Fuentes, SI, Allen, DJ, Ortiz-Lopez, A and Hernández, G. (2001). "Over-expression of cytosolic glutamine synthetase increases photosynthesis and growth at low nitrogen concentrations". Journal Of Experimental Botany. 52(358):1071-1081. [doi:10.1093/jexbot/52.358.1071]11432923
2001Moreno-Hagelsieb, G, Trevino, V, Pérez-Rueda, E, Smith, TF and Collado-Vides, J. (2001). "Transcription unit conservation in the three domains of life: A perspective from Escherichia coli". TRENDS IN GENETICS. 17(4):175-177. [doi:10.1016/S0168-9525(01)02241-7]11275307
2001Minder, AC, de Rudder, KEE, Narberhaus, F, Fischer, HM, Hennecke, H and Geiger, O. (2001). "Phosphatidylcholine levels in Bradyrhizobium japonicum membranes are critical for an efficient symbiosis with the soybean host plant". Molecular Microbiology. 39(5):1186-1198. [doi:10.1046/j.1365-2958.2001.02325.x]11251836
2001López-Lara, IM and Geiger, O. (2001). "The nodulation protein NodG shows the enzymatic activity of an 3-oxoacyl-acyl carrier protein reductase". Molecular Plant-Microbe Interactions. 14(3):349-357. [doi:10.1094/MPMI.2001.14.3.349]11277432
2001Vilazquez, E, Martínez-Romero, E, Rodriguez-Navarro, DN, Trujillo, ME, Daza, A, Mateos, PF, Martinez-Molina, E and van Berkum, P. (2001). "Characterization of rhizobial isolates of Phaseolus vulgaris by staircase electrophoresis of low-molecular-weight RNA". Applied And Environmental Microbiology. 67(2):1008-1010. [doi:10.1128/AEM.67.2.1008-1010.2001]11157280
2001Gandara, B., Merino, A.L., Rogel, MA and Martínez-Romero, E. (2001). "Limited genetic diversity of Brucella spp.". JOURNAL OF CLINICAL MICROBIOLOGY. 39(1):235-240. [doi:10.1128/JCM.39.1.235-240.2001]11136777
2001Ramirez-Santos, J, Collado-Vides, J, Garcia-Varela, M and Gomez-Eichelmann, MC. (2001). "Conserved regulatory elements of the promoter sequence of the gene rpoH of enteric bacteria". Nucleic Acids Research. 29(2):380-386. [doi:10.1093/nar/29.2.380]11139607
2001Hershberg, R., Bejerano, G., Santos-Zavaleta, A and Margalit, H.. (2001). "PromEC: An updated database of Escherichia coli mRNA promoters with experimentally identified transcriptional start sites". Nucleic Acids Research. 29(1):277-277. [doi:10.1093/nar/29.1.277]11125111
2001Ross, E.J.H., Shearman, L., Mathiesen, M., Zhou, Y.J., Arredondo-Peter, R, Sarath, G. and Klucas, R.V.. (2001). "Nonsymbiotic hemoglobins in rice are synthesized during germination and in differentiating cell types". Protoplasma. 218(3-4):125-133. [doi:10.1007/BF01306602]11770429
2001Young, JM, Kuykendall, LD, Martínez-Romero, E, Kerr, A and Sawada, H. (2001). "A revision of Rhizobium Frank 1889, with an emended description of the genus, and the inclusion of all species of Agrobacterium conn 1942 and Allorhizobium undicola de Lajudie et al. 1998 as new combinations: Rhizobium radiobacter, R. rhizogenes, R. rubi, R. undicola and R. vitis". International Journal Of Systematic And Evolutionary Microbiology. 51(1):89-103. [doi:10.1099/00207713-51-1-89]11211278
2001Dobbelaere, S, Croonenborghs, A, Thys, A, Ptacek, D, Vanderleyden, J, Dutto, P, Labandera-Gonzalez, C, Caballero-Mellado, J, Aguirre, JF, Kapulnik, Y, Brener, S, Burdman, S, Kadouri, D, Sarig, S and Okon, Y. (2001). "Responses of agronomically important crops to inoculation with Azospirillum". AUSTRALIAN JOURNAL OF PLANT PHYSIOLOGY. 28(9):871-879. [doi:10.1071/PP01074]
2001Salgado, H, Santos-Zavaleta, A, Gama-Castro, S, Millen-Zarate, D, Diaz-Peredo, E, Sanchez-Solano, F, Pérez-Rueda, E, Bonavides-Martínez, C and Collado-Vides, J. (2001). "RegulonDB (version 3.2): Transcriptional regulation and operon organization in Escherichia coli K-12". Nucleic Acids Research. 29(1):72-74. [doi:10.1093/nar/29.1.72]11125053
2000Girard, L, Brom, S, Dávalos, A, López, O., Soberón Chávez, Mario and Romero, D. (2000). "Differential regulation of fixN-reiterated genes in Rhizobium etli by a novel fixL-fixK cascade". Molecular Plant-Microbe Interactions. 13(12):1283-1292. [doi:10.1094/MPMI.2000.13.12.1283]11106020
2000Jarabo-Lorenzo, A, Velazquez, E, Perez-Galdona, R, Vega-Hernandez, MC, Martinez-Molina, E, Mateos, PF, Vinuesa, P, Martínez-Romero, E and Leon-Barrios, M. (2000). "Restriction fragment length polymorphism analysis of 16S rDNA and low molecular weight RNA profiling of rhizobial isolates from shrubby legumes endemic to the Canary islands". Systematic And Applied Microbiology. 23(3):418-425. [doi:10.1016/S0723-2020(00)80073-9]11108022
2000Hargrove, M.S., Brucker, E.A., Stec, B., Sarath, G., Arredondo-Peter, R, Klucas, R.V., Olson, J.S. and Phillips, G.N.. (2000). "Crystal structure of a nonsymbiotic plant hemoglobin". STRUCTURE WITH FOLDING & DESIGN. 8(9):1005-1014. [doi:10.1016/S0969-2126(00)00194-5]10986467
2000de Rudder, KEE, López-Lara, IM and Geiger, O. (2000). "Inactivation of the gene for phospholipid N-methyltransferase in Sinorhizobium meliloti: Phosphatidylcholine is required for normal growth". Molecular Microbiology. 37(4):763-772. [doi:10.1046/j.1365-2958.2000.02032.x]10972799
2000Flores, M, Mavingui, P, Perret, X, Broughton, WJ, Romero, D, Hernández, G, Davila, G and Palacios, R. (2000). "Prediction, identification, and artificial selection of DNA rearrangements in Rhizobium: Toward a natural genomic design". PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 97(16):9138-9143. [doi:10.1073/pnas.97.16.9138]10922070
2000Hernández, L., Sotolongo, M., Rosabal, Y., Menéndez, C., Ramírez, R., Caballero Mellado, José de Jesús and Arrieta, J.. (2000). "Structural levansucrase gene (lsdA) constitutes a functional locus conserved in the species Gluconacetobacter diazotrophicus". Archives Of Microbiology. 174(1-2):120-124. [doi:10.1007/s002030000173]10985751
2000Wang, ET and Martínez-Romero, E. (2000). "Sesbania herbacea-Rhizobium huautlense nodulation in flooded soils and comparative characterization of S. herbacea-nodulating Rhizobia in different environments". Microbial Ecology. 40(1):25-32. [doi:10.1007/s002480000010]10977874
2000Castillo, A, Taboada, H, Mendoza, A, Valderrama, B, Encarnación, S and Mora, J. (2000). "Role of GOGAT in carbon and nitrogen partitioning in Rhizobium etli". MICROBIOLOGY-SGM. 146(7):1627-1637. [doi:10.1099/00221287-146-7-1627]10878127
2000Brom, S, García-de los Santos, A, Cervantes, L, Palacios, R and Romero, D. (2000). "In Rhizobium etli symbiotic plasmid transfer, nodulation competitivity and cellular growth require interaction among different replicons". Plasmid. 44(1):34-43. [doi:10.1006/plas.2000.1469]10873525
2000Sohlenkamp, C, de Rudder, KEE, Rohrs, V, López-Lara, IM and Geiger, O. (2000). "Cloning and characterization of the gene for phosphatidylcholine synthase". JOURNAL OF BIOLOGICAL CHEMISTRY. 275(25):18919-18925. [doi:10.1074/jbc.M000844200]10858449
2000Salgado, H, Moreno Hagelsieb, Gabriel, Smith, T.F. and Collado-Vides, J. (2000). "Operons in Escherichia coli: Genomic analyses and predictions". PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 97(12):6652-6657. [doi:10.1073/pnas.110147297]10823905
2000Ramirez-Romero, MA, Soberon, N, Perez-Oseguera, A, Tellez-Sosa, J and Cevallos, MA. (2000). "Structural elements required for replication and incompatibility of the Rhizobium etli symbiotic plasmid". Journal Of Bacteriology. 182(11):3117-3124. [doi:10.1128/JB.182.11.3117-3124.2000]10809690
2000Weissenmayer, B, Geiger, O and Benning, C. (2000). "Disruption of a gene essential for sulfoquinovosyldiacylglycerol biosynthesis in Sinorhizobium meliloti has no detectable effect on root nodule symbiosis". Molecular Plant-Microbe Interactions. 13(6):666-672. [doi:10.1094/MPMI.2000.13.6.666]10830266
2000Reyes, J.D., Tabche, M.L., Morera, C., Girard, L, Romero, D, Krol, E., Miranda, J. and Soberón Chávez, Mario. (2000). "Expression pattern of Rhizobium etli ccmIEFH genes involved in c-type cytochrome maturation". Gene. 250(1-2):149-157. [doi:10.1016/S0378-1119(00)00176-1]10854788
2000Luan, P, Arechaga-Ocampo, E, Sarath, G, Arredondo-Peter, R and Klucas, RV. (2000). "Analysis of a ferric leghemoglobin reductase from cowpea (Vigna unguiculata) root nodules". Plant Science. 154(2):161-170. [doi:10.1016/S0168-9452(99)00272-1]10729615
2000González-Pasayo, R. and Martínez-Romero, E. (2000). "Multiresistance genes of Rhizobium etli CFN42". Molecular Plant-Microbe Interactions. 13(5):572-577. [doi:10.1094/MPMI.2000.13.5.572]10796024
2000Perez-Rueda, Ernesto and Collado-Vides, J. (2000). "The repertoire of DNA-binding transcriptional regulators in Escherichia coli K-12". Nucleic Acids Research. 28(8):1838-1847. [doi:10.1093/nar/28.8.1838]10734204
2000van Heiden, Jacques, Rios, Alma. F. and Collado-Vides, J. (2000). "Discovering regulatory elements in non-coding sequences by analysis of spaced dyads". Nucleic Acids Research. 28(8):1808-1818. [doi:10.1093/nar/28.8.1808]10734201
2000Perez-Rueda, E and Collado-Vides, J. (2000). "The repertoire of DNA-binding transcriptional regulators in Escherichia coli K-12". Nucleic Acids Research. 28(8):1838-1847. [doi:10.1093/nar/28.8.1838]10734204
2000Cruz-Vera, L.R., TOLEDO, I, Hernández-Sánchez, J. and Guarneros, G. (2000). "Molecular basis for the temperature sensitivity of Escherichia coli pth(Ts)". Journal Of Bacteriology. 182(6):1523-1528. [doi:10.1128/JB.182.6.1523-1528.2000]10692356
2000Valencia-Morales, E and Romero, D. (2000). "Recombination enhancement by replication (RER) in Rhizobium etli". Genetics. 154(3):971-983. 10757747
2000Castillo, P, Marquez, J, Rubluo, A, Hernández, G and López-Lara, IM. (2000). "Plant regeneration from callus and suspension cultures of Valeriana edulis ssp procera via simultaneous organogenesis and somatic embryogenesis". Plant Science. 151(2):115-119. [doi:10.1016/S0168-9452(99)00203-4]10808067
2000Sohlenkamp, C, Shelden, M, Howitt, S and Udvardi, M. (2000). "Characterization of Arabidopsis AtAMT2, a novel ammonium transporter in plants". FEBS LETTERS. 467(2-3):273-278. [doi:10.1016/S0014-5793(00)01153-4]10675553
2000Martinez-Salazar, JM and Romero, D. (2000). "Role of the ruvB gene in homologous and homeologous recombination in Rhizobium etli". Gene. 243(1-2):125-131. [doi:10.1016/S0378-1119(99)00548-X]10675620
2000van Helden, J., Andre, B. and Collado-Vides, J. (2000). "A web site for the computational analysis of yeast regulatory sequences". Yeast. 16(2):177-187. <a target="_blank" href="http://dx.doi.org/10.1002/(SICI)1097-0061(20000130)16:23.0.CO;2-9">[doi:10.1002/(SICI)1097-0061(20000130)16:23.0.CO;2-9]10641039
2000Schoenbeck, MA, Temple, SJ, Trepp, GB, Blumenthal, JM, Samac, DA, Gantt, JS, Hernández, G and Vance, CP. (2000). "Decreased NADH glutamate synthase activity in nodules and flowers of alfalfa (Medicago sativa L.) transformed with an antisense glutamate synthase transgene". Journal Of Experimental Botany. 51(342):29-39. [doi:10.1093/jexbot/51.342.29]10938793
2000Lira-Ruan K., Sarath G., Klucas R.V. and Arredondo-Peter R.. (2000). "Characterization of leghemoglobin from a mimosoid legume, Leucaena esculenta, root nodules". Revista Brasileira de Fisiologia Vegetal. 12(1):37-44.
2000Diouf, A, de Lajudie, P, Neyra, M, Kersters, K, Gillis, M, Martínez-Romero, E and Gueye, M. (2000). "Polyphasic characterization of Rhizobia that nodulate Phaseolus vulgaris in West Africa (Senegal and Gambia)". International Journal Of Systematic And Evolutionary Microbiology. 50(1):159-170. [doi:10.1099/00207713-50-1-159]10826800
2000Arredondo Peter, José Raúl, Ramírez, Y.M., Sarath, G. and Klucas, R.V.. (2000). "SEQUENCE ANALYSIS OF AN ANCIENT HEMOGLOBIN cDNA ISOLATED FROM THE MOSS Physcomitrella patens". Plant Physiology. 122():1457-.
2000Tapia-Hernandez, A, Bustillos-Cristales, MR, Jimenez-Salgado, T, Caballero-Mellado, J and Fuentes-Ramirez, LE. (2000). "Natural endophytic occurrence of Acetobacter diazotrophicus in pineapple plants". Microbial Ecology. 39(1):49-55. [doi:10.1007/s002489900190]10790517
2000López-Lara, IM and Geiger, O. (2000). "Expression and purification of four different rhizobial acyl carrier proteins". MICROBIOLOGY-SGM. 146(4):839-849. [doi:10.1099/00221287-146-4-839]10784042
2000Strainic, MG, Sullivan, JJ, Collado-Vides, J and deHaseth, PL. (2000). "Promoter interference in a bacteriophage lambda control region: Effects of a range of interpromoter distances". Journal Of Bacteriology. 182(1):216-220. [doi:10.1128/JB.182.1.216-220.2000]10613884
2000Salgado, H, Santos-Zavaleta, A, Gama-Castro, S, Millan-Zarate, D, Blattner, FR and Collado-Vides, J. (2000). "RegulonDB (version 3.0): Transcriptional regulation and operon organization in Escherichia coli K-12". Nucleic Acids Research. 28(1):65-67. [doi:10.1093/nar/28.1.65]10592182
1999Romero, D, Barrón, C. and Gómez, S.. (1999). "The optimal geometry of Lennard-Jones clusters: 148-309". COMPUT PHYS COMMUN. 123(1-3):87-96.
1999Ramírez, M, Valderrama, B, Arredondo-Peter, R, Soberon, M, Mora, J and Hernández, G. (1999). "Rhizobium etli genetically engineered for the heterologous expression of Vitreoscilla sp. hemoglobin: Effects on free-living and symbiosis". Molecular Plant-Microbe Interactions. 12(11):1008-1015. [doi:10.1094/MPMI.1999.12.11.1008]
1999Romero, D, Martinez-Salazar, J, Ortiz, E, Rodriguez, C and Valencia-Morales, E. (1999). "Repeated sequences in bacterial chromosomes and plasmids: A glimpse from sequenced genomes". Research In Microbiology. 150(9-10):735-743. [doi:10.1016/S0923-2508(99)00119-9]10673011
1999Phillips, DA, Joseph, CM, Yang, GP, Martínez-Romero, E, Sanborn, JR and Volpin, H. (1999). "Identification of lumichrome as a Sinorhizobium enhancer of alfalfa root respiration and shoot growth". PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 96(22):12275-12280. [doi:10.1073/pnas.96.22.12275]10535912
1999Moreno-Hagelsieb, G, Gomez-Puyou, A and Soberon, X. (1999). "Escherichia coli TEM1 beta-lactamase in CTAB reverse micelles: exchange/diffusion-limited catalysis". FEBS LETTERS. 459(1):111-114. [doi:10.1016/S0014-5793(99)01228-4]10508927
1999Tan, ZY, Wang, ET, Peng, GX, Zhu, ME, Martínez-Romero, E and Chen, WX. (1999). "Characterization of bacteria isolated from wild legumes in the north- western regions of China". INTERNATIONAL JOURNAL OF SYSTEMATIC BACTERIOLOGY. 49(4):1457-1469. [doi:10.1099/00207713-49-4-1457]10555327
1999Wang, ET, Rogel, MA, García-de los Santos, A, Martínez, J, Cevallos, MA and Martínez-Romero, E. (1999). "Rhizobium etli bv. mimosae, a novel biovar isolated from Mimosa affinis". INTERNATIONAL JOURNAL OF SYSTEMATIC BACTERIOLOGY. 49(4):1479-1491. [doi:10.1099/00207713-49-4-1479]10555329
1999Caballero-Mellado, J, Lopez-Reyes, L and Bustillos-Cristales, R. (1999). "Presence of 16S rRNA genes in multiple replicons in Azospirillum brasilense". Fems Microbiology Letters. 178(2):283-288. [doi:10.1111/j.1574-6968.1999.tb08689.x]
1999Laeremans, T., Snoeck, C., Marien, J., Verreth, C., Martínez-Romero, E, Prome, J.C. and Vanderleyden, J.. (1999). "Phaseolus vulgaris recognizes Azorhizobium caulinodans nod factors with a variety of chemical substituents". Molecular Plant-Microbe Interactions. 12(9):820-824. [doi:10.1094/MPMI.1999.12.9.820]10494633
1999Herrera-Cervera, JA, Caballero-Mellado, J, Laguerre, G, Tichy, HV, Requena, N, Amarger, N, Martínez-Romero, E, Olivares, J and Sanjuan, J. (1999). "At least five rhizobial species nodulate Phaseolus vulgaris in a Spanish soil". Fems Microbiology Ecology. 30(1):87-97. [doi:10.1016/S0168-6496(99)00044-6]
1999Barrón, C., Gómez, S., Romero, D and Saavedra, A.. (1999). "A genetic algorithm for Lennard-Jones atomic clusters". APPLIED MATHEMATICS LETTERS. 12(7):85-90. [doi:10.1016/S0893-9659(99)00106-8]
1999de Rudder, KEE, Sohlenkamp, C and Geiger, O. (1999). "Plant-exuded choline is used for rhizobial membrane lipid biosynthesis by phosphatidylcholine synthase". JOURNAL OF BIOLOGICAL CHEMISTRY. 274(28):20011-20016. [doi:10.1074/jbc.274.28.20011]10391951
1999Fuentes-Ramirez, LE, Caballero-Mellado, J, Sepulveda, J and Martínez-Romero, E. (1999). "Colonization of sugarcane by Acetobacter diazotrophicus is inhibited by high N-fertilization". Fems Microbiology Ecology. 29(2):117-128. [doi:10.1016/S0168-6496(98)00125-1]
1999Castillo, M, Flores, M, Mavingui, P, Martínez-Romero, E, Palacios, R and Hernández, G. (1999). "Increase in alfalfa nodulation, nitrogen fixation, and plant growth by specific DNA amplification in Sinorhizobium meliloti". Applied And Environmental Microbiology. 65(6):2716-2722. 10347066
1999Soberon, M, Lopez, O, Morera, C, Girard, L, Tabche, ML and Miranda, J. (1999). "Enhanced nitrogen fixation in a Rhizobium etli ntrC mutant that overproduces the Bradyrhizobium japonicum symbiotic terminal oxidase cbb(3)". Applied And Environmental Microbiology. 65(5):2015-2019. 10223993
1999Wang, ET, Martinez-Romero, J and Martínez-Romero, E. (1999). "Genetic diversity of Rhizobia from Leucaena leucocephala nodules in Mexican soils". MOLECULAR ECOLOGY. 8(5):711-724. [doi:10.1046/j.1365-294X.1999.00608.x]
1999Thieffry, D. and Romero, D. (1999). "The modularity of biological regulatory networks". Biosystems. 50(1):49-59. [doi:10.1016/S0303-2647(98)00087-2]10235650
1999Caballero-Mellado, J and Martínez-Romero, E. (1999). "Soil fertilization limits the genetic diversity of Rhizobium in bean nodules". Symbiosis. 26(2):111-121.
1999Brom, S and Romero, D. (1999). "Plasmid biology 98: international symposium on plasmid biology". Plasmid. 41(2):141-177. 10087219
1999Corvera Poire, Adriana De La Concepción, Prome, D., Prome, J.C., Martínez-Romero, E and Romero, D. (1999). "The nolL gene from Rhizobium etli determines nodulation efficiency by mediating the acetylation of the fucosyl residue in the nodulation factor". Molecular Plant-Microbe Interactions. 12(3):236-246. [doi:10.1094/MPMI.1999.12.3.236]10065560
1999Collado-Vides, J, Hofestadt, R., Mavrovouniotis, M. and Michal, G.. (1999). "Modeling and simulation of gene regulation and metabolic pathways". Biosystems. 49(1):79-82. [doi:10.1016/S0303-2647(98)00081-1]10091975
1999Salgado, H, Santos, A, Garza-Ramos, U, van Helden, J, Diaz, E and Collado-Vides, J. (1999). "RegulonDB (version 2.0): A database on transcriptional regulation in Escherichia coli". Nucleic Acids Research. 27(1):59-60. [doi:10.1093/nar/27.1.59]9847141
1999Wang, ET, van Berkum, P, Sui, XH, Beyene, D, Chen, WX and Martínez-Romero, E. (1999). "Diversity of Rhizobia associated with Amorpha fruticosa isolated from Chinese soils and description of Mesorhizobium amorphae sp. nov.". INTERNATIONAL JOURNAL OF SYSTEMATIC BACTERIOLOGY. 49(1):51-65. [doi:10.1099/00207713-49-1-51]10028247
1998Arredondo-Peter, R, Hargrove, M.S., Moran, J.F., Sarath, G. and Klucas, R.V.. (1998). "Plant hemoglobins". Plant Physiology. 118(4):1121-1125. [doi:10.1104/pp.118.4.1121]9847086
1998Laeremans, T, Martínez-Romero, E and Vanderleyden, J. (1998). "Isolation and sequencing of a second Rhizobium tropici CFN299 genetic locus that contains genes homologous to amino acid sulphate activation genes". MITOCHONDRIAL DNA. 9(1):65-70. [doi:10.3109/10425179809050027]9773278
1998Vasquez-Arroyo, J, Sessitsch, A, Martínez-Romero, E and Pena-Cabriales, JJ. (1998). "Nitrogen fixation and nodule occupancy by native strains of Rhizobium on different cultivars of common bean (Phaseolus vulgaris L.)". PLANT AND SOIL. 204(1):147-154. [doi:10.1023/A:1004399531966]
1998Martínez-Romero, E, Hernandez-Lucas, I, Pena-Cabriales, JJ and Castellanos, JZ. (1998). "Symbiotic performance of some modified Rhizobium etli strains in assays with Phaseolus vulgaris beans that have a high capacity to fix N2". PLANT AND SOIL. 204(1):89-94. [doi:10.1023/A:1004383028331]
1998Ludwig, W, Amann, R, Martínez-Romero, E, Schonhuber, W, Bauer, S, Neef, A and Schleifer, KH. (1998). "rRNA based identification and detection systems for Rhizobia and other bacteria". PLANT AND SOIL. 204(1):1-19. [doi:10.1023/A:1004350708767]
1998Sievers, M, Schlegel, HG, Caballero-Mellado, J, Dobereiner, J and Ludwig, W. (1998). "Phylogenetic identification of two major nitrogen-fixing bacteria associated with sugarcane". Systematic And Applied Microbiology. 21(4):505-508. [doi:10.1016/S0723-2020(98)80062-3]9924818
1998Flores, M, Mavingui, P, Girard, L, Perret, X, Broughton, WJ, Martínez-Romero, E, Davila, G and Palacios, R. (1998). "Three replicons of Rhizobium sp. strain NGR234 harbor symbiotic gene sequences". Journal Of Bacteriology. 180(22):6052-6053. 9811668
1998Mandon, K, Michel-Reydellet, N, Encarnación, S, Kaminski, PA, Leija, A, Cevallos, MA, Elmerich, C and Mora, J. (1998). "Poly-ß-hydroxybutyrate turnover in Azorhizobium caulinodans is required for growth and affects nifA expression". Journal Of Bacteriology. 180(19):5070-5076. 9748438
1998Thieffry, D, Salgado, H, Huerta, AM and Collado-Vides, J. (1998). "Prediction of transcriptional regulatory sites in the complete genome sequence of Escherichia coli K-12". Bioinformatics. 14(5):391-400. [doi:10.1093/bioinformatics/14.5.391]9682052
1998van Helden, J., Andre, B. and Collado-Vides, J. (1998). "Extracting regulatory sites from the upstream region of yeast genes by computational analysis of oligonucleotide frequencies". Journal Of Molecular Biology. 281(5):827-842. [doi:10.1006/jmbi.1998.1947]9719638
1998Encarnación, S, Calderon, J, Gelbard, AS, Cooper, AJL and Mora, J. (1998). "Glutamine biosynthesis and the utilization of succinate and glutamine by Rhizobium etli and Sinorhizobium meliloti". MICROBIOLOGY-SGM. 144(9):2629-2638. [doi:10.1099/00221287-144-9-2629]9782512
1998Perez-Ramirez, NO, Rogel, MA, Wang, E, Castellanos, JZ and Martínez-Romero, E. (1998). "Seeds of Phaseolus vulgaris bean carry Rhizobium etli". Fems Microbiology Ecology. 26(4):289-296. [doi:10.1016/S0168-6496(98)00043-9]
1998Rosenblueth, M, Hynes, MF and Martínez-Romero, E. (1998). "Rhizobium tropici teu genes involved in specific uptake of Phaseolus vulgaris bean-exudate compounds". MOLECULAR & GENERAL GENETICS. 258(6):587-598. [doi:10.1007/s004380050772]9671027
1998Wang, ET, van Berkum, P., Beyene, D., Sui, X.H., Dorado, O., Chen, W.X. and Martínez-Romero, E. (1998). "Rhizobium huautlense sp. nov., a symbiont of Sesbania herbacea that has a close phylogenetic relationship with Rhizobium galegae". INTERNATIONAL JOURNAL OF SYSTEMATIC BACTERIOLOGY. 48(3):687-699. [doi:10.1099/00207713-48-3-687]9734023
1998Hernandez-Sanchez, J, Valadez, JG, Herrera, JV, Ontiveros, C and Guarneros, G. (1998). "lambda bar minigene-mediated inhibition of protein synthesis involves accumulation of peptidyl-tRNA and starvation for tRNA". EMBO JOURNAL. 17(13):3758-3765. [doi:10.1093/emboj/17.13.3758]9649445
1998Dunn, MF. (1998). "Tricarboxylic acid cycle and anaplerotic enzymes in Rhizobia". Fems Microbiology Reviews. 22(2):105-123. [doi:10.1016/S0168-6445(98)00010-2]9729766
1998Rodriguez, C and Romero, D. (1998). "Multiple recombination events maintain sequence identity among members of the nitrogenase multigene family in Rhizobium etli". Genetics. 149(2):785-794. 9611191
1998Mavingui, P, Laeremans, T, Flores, M, Romero, D, Martínez-Romero, E and Palacios, R. (1998). "Genes essential for nod factor production and nodulation are located on a symbiotic amplicon (AMPRtrCFN299pc60) in Rhizobium tropici". Journal Of Bacteriology. 180(11):2866-2874. 9603874
1998Collado-Vides, J, Gutierrez-Rios, RM and Bel-Enguix, G. (1998). "Networks of transcriptional regulation encoded in a grammatical model". Biosystems. 47(1-2):103-118. [doi:10.1016/S0303-2647(98)00016-1]9715754
1998Thieffry Jacot-Descombes, Denis Louis, Huerta Moreno, Araceli, Pérez Rueda, Ernesto and Collado-Vides, J. (1998). "From specific gene regulation to genomic networks: A global analysis of transcriptional regulation in Escherichia coli". Bioessays. 20(5):433-440. <a target="_blank" href="http://dx.doi.org/10.1002/(SICI)1521-1878(199805)20:53.0.CO;2-2">[doi:10.1002/(SICI)1521-1878(199805)20:53.0.CO;2-2]9670816
1998Mendoza, A, Valderrama, B, Leija, A and Mora, J. (1998). "nifA-dependent expression of glutamate dehydrogenase in Rhizobium etli modifies nitrogen partitioning during symbiosis". Molecular Plant-Microbe Interactions. 11(2):83-90. [doi:10.1094/MPMI.1998.11.2.83]9450332
1998Pérez Rueda, Ernesto, Gralla, J.D. and Collado-Vides, J. (1998). "Genomic position analyses and the transcription machinery". Journal Of Molecular Biology. 275(2):165-170. [doi:10.1006/jmbi.1997.1465]9466899
1998Olsthoorn, M.A., López-Lara, IM, Petersen, B.O., Bock, K., Haverkamp, J., Spaink, H.P. and Thomas Oates, J.E.. (1998). "Novel branched Nod factor structure results from -(1 3) fucosyl transferase activity: the major lipo-chitin oligosaccharides from Mesorhizobium loti strain NZP2213 bear an -(1 3) fucosyl subtituent on a nonterminal backbone residue". Biochemistry. 37(25):9024-9032.
1998Huerta, AM, Salgado, H, Thieffry, D and Collado-Vides, J. (1998). "RegulonDB: A database on transcriptional regulation in Escherichia coli". Nucleic Acids Research. 26(1):55-59. [doi:10.1093/nar/26.1.55]9399800
1997Dunn, MF, Araiza, G, Cevallos, MA and Mora, J. (1997). "Regulation of pyruvate carboxylase in Rhizobium etli". Fems Microbiology Letters. 157(2):301-306. [doi:10.1016/S0378-1097(97)00491-6]9435112
1997Laeremans, T, Coolsaet, N, Verreth, C, Snoeck, C, Hellings, N, Vanderleyden, J and Martínez-Romero, E. (1997). "Functional redundancy of genes for sulphate activation enzymes in Rhizobium sp. BR816". MICROBIOLOGY-SGM. 143(12):3933-3942. [doi:10.1099/00221287-143-12-3933]9421916
1997Romero, D and Palacios de la Lama, Rafael. (1997). "Gene amplification and genomic plasticity in prokaryotes". ANNUAL REVIEW OF GENETICS. 31():91-111. [doi:10.1146/annurev.genet.31.1.91]9442891
1997MirandaRios, J, Morera, C, Taboada, H, Dávalos, A, Encarnación, S, Mora, J and Soberon, M. (1997). "Expression of thiamin biosynthetic genes (thiCOGE) and production of symbiotic terminal oxidase cbb(3), in Rhizobium etli". Journal Of Bacteriology. 179(22):6887-6893. [doi:10.1128/jb.179.22.6887-6893.1997]9371431
1997Barrera, LL, Trujillo, ME, Goodfellow, M, Garcia, FJ, HernandezLucas, I, Davila, G, vanBerkum, P and Martínez-Romero, E. (1997). "Biodiversity of bradyrhizobia nodulating Lupinus spp.". INTERNATIONAL JOURNAL OF SYSTEMATIC BACTERIOLOGY. 47(4):1086-1091. [doi:10.1099/00207713-47-4-1086]9336911
1997Barrón, C., Gómez, S. and Romero, D. (1997). "Lower energy icosahedral atomic clusters with incomplete core". APPLIED MATHEMATICS LETTERS. 10(5):25-28. [doi:10.1016/S0893-9659(97)00078-5]
1997Blattner, FR, Plunkett, G, Bloch, CA, Perna, NT, Burland, V, Riley, M, Collado-Vides, J, Glasner, JD, Rode, CK, Mayhew, GF, Gregor, J, Davis, NW, Kirkpatrick, HA, Goeden, MA, Rose, DJ, Mau, B and Shao, Y. (1997). "The complete genome sequence of Escherichia coli K-12". Science. 277(5331):1453-1462. [doi:10.1126/science.277.5331.1453]9278503
1997García-de los Santos, A and Brom, S. (1997). "Characterization of two plasmid-borne lps beta loci of Rhizobium etli required for lipopolysaccharide synthesis and for optimal interaction with plants". Molecular Plant-Microbe Interactions. 10(7):891-902. [doi:10.1094/MPMI.1997.10.7.891]9304861
1997Hernandez, J, Ontiveros, C, Valadez, JG, Buckingham, RH and Guarneros, G. (1997). "Regulation of protein synthesis by minigene expression". Biochimie. 79(8):527-531. [doi:10.1016/S0300-9084(97)82746-0]9451455
1997Jiménez-Salgado, T., FuentesRamirez, LE, Tapia-Hernández, A., Mascarua-Esparza, M.A., Martínez-Romero, E and CaballeroMellado, J. (1997). "Coffea arabica L., a new host plant for Acetobacter diazotrophicus, and isolation of other nitrogen-fixing acetobacteria". Applied And Environmental Microbiology. 63(9):3676-3683. 9293018
1997RamirezRomero, MA, Bustos, P, Girard, L, Rodríguez, O, Cevallos, MA and Davila, G. (1997). "Sequence, localization and characteristics of the replicator region of the symbiotic plasmid of Rhizobium etli". MICROBIOLOGY-SGM. 143(8):2825-2831. [doi:10.1099/00221287-143-8-2825]9274036
1997Tan, Z.Y., Xu, X.D., Wang, E.T., Gag, J.L., Martínez-Romero, E and Chen, W.X.. (1997). "Phylogenetic and genetic relationships of Mesorhizobium tianshanense and related Rhizobia". INTERNATIONAL JOURNAL OF SYSTEMATIC BACTERIOLOGY. 47(3):874-879. [doi:10.1099/00207713-47-3-874]9226921
1997Chichkova, S, Arellano, J, Svoboda, S and Hernández, G. (1997). "Ectopic overexpression of NADH-glutamate synthase in transgenic tobacco modifies plant response to excess of ammonium.". Plant Physiology. 114(3, S):911-911.
1997Ontiveros, C, Valadez, JG, Hernandez, J and Guarneros, G. (1997). "Inhibition of Escherichia coli protein synthesis by abortive translation of phage lambda minigenes". Journal Of Molecular Biology. 269(2):167-175. [doi:10.1006/jmbi.1997.1017]9191062
1997Mavingui Malonda, Aime Dieudonne Patrick, Flores López, Margarita, Romero, D, Martínez-Romero, E and Palacios de la Lama, Rafael. (1997). "Generation of Rhizobium Strains with Improved Symbiotic Properties by Random Dna Amplification (RDA)". Nature Biotechnology. 15(6):564-569. [doi:10.1038/nbt0697-564]9181580
1997Calderón, J., Olvera, L, Martinez, LM and Davila, G. (1997). "A Neurospora crassa mutant altered in the regulation of L-amino acid oxidase". MICROBIOLOGY-SGM. 143(6):1969-1974. [doi:10.1099/00221287-143-6-1969]9202472
1997Quinto, C., Wijfjes, A.H.M., Bloemberg, G.V., Blok-Tip, L., López-Lara, IM, Lugtenberg, B.J.J., Thomas-Oates, J.E. and Spaink, H.P.. (1997). "Bacterial nodulation protein nodZ is a chitin oligosaccharide fucosyltransferase which can also recognize related substrates of animal origin". PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 94(9):4336-4341. [doi:10.1073/pnas.94.9.4336]9113990
1997AguilarGaytan, R, Cerbon, MA, Cevallos, MA, Lizano, M and Huberman, A. (1997). "Sequence of a cDNA encoding the molt-inhibiting hormone from the Mexican crayfish Procambarus bouvieri (Crustacea, Decapoda)". ASIA-PACIFIC JOURNAL OF MOLECULAR BIOLOGY AND BIOTECHNOLOGY. 5(1):51-55.
1997Thieffry Jacot-Descombes, Denis Louis, Rosenblueth, D.A., Huerta Moreno, Araceli, Salgado, H and Collado-Vides, J. (1997). "Definite-clause grammars for the analysis of CIS-regulatory regions in E. coli.". Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing. ():441-452. 9390313
1997Thieffry, D. (1997). "Contributions of the ''Rouge-Cloitre group'' to the notion of ''messenger RNA''". HISTORY AND PHILOSOPHY OF THE LIFE SCIENCES. 19(1):89-111. 9284644
1997Romero, D and Sánchez-Flores, A.. (1997). "Omnipotence in stretchable two-dimensional scaling". MATH SOC SCI. 33(1):1-21. [doi:10.1016/S0165-4896(96)00817-7]
1997Collado-Vides, J, Huerta, AM and Klose, K. (1997). "Three models of gene regulation in E. coli". LECT NOTES COMPUT SC. 1278():72-78.
1996Collado-Vides, J. (1996). "Towards a unified grammatical model of s70 and s54 bacterial promoters". Biochimie. 78(5):351-363. [doi:10.1016/0300-9084(96)84767-5]8905154
1996Rosenblueth, DA, Thieffry, D, Huerta, AM, Salgado, H and Collado-Vides, J. (1996). "Syntactic recognition of regulatory regions in Escherichia coli". COMPUTER APPLICATIONS IN THE BIOSCIENCES. 12(5):415-422. 8996790
1996Pérez Oseguera, María de los Angeles and GUERECA, LEOPOLDO. (1996). "Acceptor Reactions of Levansucrase from Bacillus circulans. Enzyme Eng. XIII Annals. New York Academy of Science.". Acceptor Reactions of Levansucrase from Bacillus circulans. Vol 799():743-746.
1996Dunn, MF, Encarnación, S, Araiza, G, Vargas, MC, Dávalos, A, Peralta, H, Mora, Y and Mora, J. (1996). "Pyruvate carboxylase from Rhizobium etli: Mutant characterization, nucleotide sequence, and physiological role". Journal Of Bacteriology. 178(20):5960-5970. [doi:10.1128/jb.178.20.5960-5970.1996]8830693
1996Girard, L, Valderrama, B, Palacios, R, Romero, D and Davila, G. (1996). "Transcriptional activity of the symbiotic plasmid of Rhizobium etli is affected by different environmental conditions". MICROBIOLOGY-SGM. 142(10):2847-2856. [doi:10.1099/13500872-142-10-2847]
1996Laeremans, T., Caluwaerts, I., Verreth, C., Rogel, MA, Vanderleyden, J. and Martínez-Romero, E. (1996). "Isolation and characterization of the Rhizobium tropici nod factor sulfation genes". Molecular Plant-Microbe Interactions. 9(6):492-500. [doi:10.1094/MPMI-9-0492]8755625
1996Valderrama, B, Dávalos, A, Girard, L, Morett, E and Mora, J. (1996). "Regulatory proteins and CIS-acting elements involved in the transcriptional control of Rhizobium etli reiterated nifH genes". Journal Of Bacteriology. 178(11):3119-3126. [doi:10.1128/jb.178.11.3119-3126.1996]8655489
1996Taboada, H, Encarnación, S, Vargas, MD, Mora, Y, Martínez-Romero, E and Mora, J. (1996). "Glutamine synthetase II constitutes a novel taxonomic marker in Rhizobium etli and other Rhizobium species". INTERNATIONAL JOURNAL OF SYSTEMATIC BACTERIOLOGY. 46(2):485-491. [doi:10.1099/00207713-46-2-485]
1996Hofestadt, R., Mavrovouniotis, M., Collado-Vides, J and Loffler, M.. (1996). "Modeling and simulation of metabolic pathways, gene regulation and cell differentiation. International Conference and Research Center for Computer Science, Schloss Dagstuhl, Saarland, Germany, 22-27 October, 1995". Bioessays. 18(4):333-335. [doi:10.1002/bies.950180412]8967902
1996Cevallos, MA, Encarnación, S, Leija, A, Mora, Y and Mora, J. (1996). "Genetic and physiological characterization of a Rhizobium etli mutant strain unable to synthesize poly-ß-hydroxybutyrate". Journal Of Bacteriology. 178(6):1646-1654. [doi:10.1128/jb.178.6.1646-1654.1996]8626293
1996Arellano, J, Vazquez, F, Villegas, T and Hernández, G. (1996). "Establishment of transformed root cultures of Perezia cuernavacana producing the sesquiterpene quinone perezone". PLANT CELL REPORTS. 15(7):455-458. 24178452
1996Santos, AGD, Brom, S and Romero, D. (1996). "Rhizobium plasmids in bacteria-legume interactions". World Journal Of Microbiology & Biotechnology. 12(2):119-125. [doi:10.1007/BF00364676]24415159
1996Thieffry, D and Burian, RM. (1996). "Jean Brachet's alternative scheme for protein synthesis". TRENDS IN BIOCHEMICAL SCIENCES. 21(3):114-117. [doi:10.1016/S0968-0004(96)10015-3]8882586
1996De La Vega, F.M., Galindo, J.M., Old, L.G. and Guarneros, G. (1996). "Microbial genes homologous to the peptidyl-tRNA hydrolase-encoding gene of Escherichia coli". Gene. 169(1):97-100. [doi:10.1016/0378-1119(95)00823-3]8635758
1996Martínez-Romero, E and Caballero-Mellado, J.. (1996). "Rhizobium phylogenies and bacterial genetic diversity". CRITICAL REVIEWS IN PLANT SCIENCES. 15(2):113-140. [doi:10.1080/07352689609701938]
1996Folch Mallol, J.L., Marroqui, S., Sousa, C., Manyani, H., López-Lara, IM, van der Drift, K.M.G.M., Haverkamp, J., Quinto, C., Gil Serrano, A., Thomas Oates, J.E., Spaink, H.P. and Megías, M.. (1996). "Characterization of Rhizobium tropici CIAT899 nodulation factors: the role of nodH and nodPQ in their sulphation". Molecular Plant-Microbe Interactions. 9(3):151-163.
1996Barrón, C., Gómez, S. and Romero, D. (1996). "Archimedean polyhedron structure yields a lower energy atomic cluster". APPLIED MATHEMATICS LETTERS. 9(5):75-78. [doi:10.1016/0893-9659(96)00076-6]
1996Romero, D, Martinez, L. and Fionova, L.. (1996). "Computer simulation of grain boundary spatial distribution in a three-dimensional polycrystal with cubic structure". ACTA MATER. 44(1):391-402. [doi:10.1016/1359-6454(95)00142-X]
1996Martínez-Romero, E and CaballeroMellado, J. (1996). "Rhizobium phylogenies and bacterial genetic diversity". CRITICAL REVIEWS IN PLANT SCIENCES. 15(2):113-140. [doi:10.1080/713608131]
1996Thieffry, D. (1996). "Escherichia coli as a model system with which to study cell differentiation". HISTORY AND PHILOSOPHY OF THE LIFE SCIENCES. 18(2):163-193. 9122371
1995López-Lara, IM, van Der Drift, K.M.G.M., van Brussel, A.A.N., Haverkamp, J., Lugtenberg, B.J.J., Thomas-Oates, J.E. and Spaink, H.P.. (1995). "Induction of nodule primordia on Phaseolus and Acacia by lipo-chitin oligosaccharide nodulation signals from broad-host-range Rhizobium strain GRH2". PLANT MOLECULAR BIOLOGY. 29(3):465-477. [doi:10.1007/BF00020978]8534846
1995Cárdenas, L., Domínguez, J., Quinto, C., López-Lara, IM, Lugtenberg, B.J.J., Spaink, H.P., Rademaker, G.J., Haverkamp, J. and Thomas-Oates, J.E.. (1995). "Isolation, chemical structures and biological activity of the lipo-chitin oligosaccharide nodulation signals from Rhizobium etli". PLANT MOLECULAR BIOLOGY. 29(3):453-464. [doi:10.1007/BF00020977]8534845
1995HERNANDEZLUCAS, I, PARDO, MA, SEGOVIA, L, MIRANDA, J and Martínez-Romero, E. (1995). "Rhizobium tropici chromosomal citrate synthase gene". Applied And Environmental Microbiology. 61(11):3992-3997. 8526514
1995CABALLEROMELLADO, J, FUENTESRAMIREZ, LE, REIS, VM and Martínez-Romero, E. (1995). "GENETIC-STRUCTURE OF Acetobacter-diazotrophicus POPULATIONS AND IDENTIFICATION OF A NEW GENETICALLY DISTANT GROUP". Applied And Environmental Microbiology. 61(8):3008-3013. 16535102
1995Poupot, R., Martínez-Romero, E, Maillet, F. and Promé, J.C.. (1995). "Rhizobium tropici nodulation factor sulfation is limited by the quantity of activated form of sulfate". FEBS LETTERS. 368(3):536-540. [doi:10.1016/0014-5793(95)00737-T]7635216
1995Mendoza Herrera, Alberto, Leija, A, Martínez-Romero, E, Hernández, G and Mora, J. (1995). "The enhancement of ammonium assimilation in Rhizobium etli prevents nodulation of Phaseolus vulgaris". Molecular Plant-Microbe Interactions. 8(4):584-592. [doi:10.1094/MPMI-8-0584]8589413
1995HERNANDEZLUCAS, I, SEGOVIA, L, Martínez-Romero, E and PUEPPKE, SG. (1995). "Phylogenetic relationships and host range of Rhizobium spp. that nodulate Phaseolus vulgaris L.". Applied And Environmental Microbiology. 61(7):2775-2779. 7618891
1995Hernández, G, RAMIREZ, M, SUAREZ, R and FUENTES, SI. (1995). "ROOT EXUDED nod-GENE INDUCING SIGNALS LIMIT THE NODULATION CAPACITY OF DIFFERENT ALFALFA VARIETIES WITH Rhizobium-meliloti". PLANT CELL REPORTS. 14(10):626-629. [doi:10.1007/BF00232726]24194309
1995LOHRKE, SM, ORF, JH, Martínez-Romero, E and SADOWSKY, MJ. (1995). "HOST-CONTROLLED RESTRICTION OF NODULATION BY Bradyrhizobium-japonicum STRAINS IN SEROGROUP-110". Applied And Environmental Microbiology. 61(6):2378-2383. 16535054
1995Encarnación, S, Dunn, MF, WILLMS, K and Mora, J. (1995). "Fermentative and aerobic metabolism in Rhizobium etli". Journal Of Bacteriology. 177(11):3058-3066. [doi:10.1128/jb.177.11.3058-3066.1995]7768801
1995Toledo García, Icela Ivonne, Rangel, P. and Hansberg, W.. (1995). "Redox imbalance at the start of each morphogenetic step of Neurospora crassa conidiation". ARCHIVES OF BIOCHEMISTRY AND BIOPHYSICS. 319(2):519-524. [doi:10.1006/abbi.1995.1326]7786037
1995BARRIOS, H, Fischer, H.M., Hennecke, H. and MORETT, E. (1995). "OVERLAPPING PROMOTERS FOR 2 DIFFERENT RNA-POLYMERASE HOLOENZYMES CONTROL Bradyrhizobium-japonicum nifA EXPRESSION". Journal Of Bacteriology. 177(7):1760-1765. [doi:10.1128/jb.177.7.1760-1765.1995]7896698
1995GENIAUX, E, FLORES, M, PALACIOS, R and Martínez-Romero, E. (1995). "Presence of megaplasmids in Rhizobium tropici and further evidence of differences between the two R. tropici subtypes". INTERNATIONAL JOURNAL OF SYSTEMATIC BACTERIOLOGY. 45(2):392-394. [doi:10.1099/00207713-45-2-392]
1995POUPOT, R, Martínez-Romero, E, GAUTIER, N and PROME, JC. (1995). "Wild type Rhizobium etli, a bean symbiont, produces acetylfucosylated, N-methylated, and carbamoylated nodulation factors". JOURNAL OF BIOLOGICAL CHEMISTRY. 270(11):6050-6055. [doi:10.1074/jbc.270.11.6050]7890737
1995López-Lara, IM, Orgambide, O., Dazzo, F.B., Olivares, J. and Toro, N.. (1995). "Surface polysaccharide mutants of Rhizobium sp. (Acacia) strain GRH2: Major requirement of lipopolysaccharide for successful invasion of Acacia nodules and host range determination". MICROBIOLOGY-SGM. 141(3):573-581. [doi:10.1099/13500872-141-3-573]7711895
1995DURAN, S and CALDERON, J. (1995). "ROLE OF THE GLUTAMINE TRANSAMINASE-OMEGA-AMIDASE PATHWAY AND GLUTAMINASE IN GLUTAMINE DEGRADATION IN Rhizobium-ETLI". MICROBIOLOGY-SGM. 141(3):589-595. [doi:10.1099/13500872-141-3-589]
1995López-Lara, IM, van den Berg, J.D.J., Thomas-Oates, J.E., Glushka, J., Lugtenberg, B.J.J. and Spaink, H.P.. (1995). "Structural identification of the iipo-chitin oligosaccharide nodulation signals of Rhizobium loti". Molecular Microbiology. 15(4):627-638. [doi:10.1111/j.1365-2958.1995.tb02372.x]7783635
1995Romero, D, MARTINEZSALAZAR, J, Girard, L, Brom, S, DAVILA, G, PALACIOS, R, FLORES, M and RODRIGUEZ, C. (1995). "Discrete amplifiable regions (amplicons) in the symbiotic plasmid of Rhizobium etli CFN42". Journal Of Bacteriology. 177(4):973-980. [doi:10.1128/jb.177.4.973-980.1995]7860608
1995Peralta, H, CALDERON JIMENEZ, JORGE, DU PONT, GISELA, DURAN, SOCORRO and HUERTA SAQUERO, ALEJANDRA. (1995). "El metabolismo de nitrógeno y carbono en Rhizobium en vida libre y en simbiosis con leguminosas.". Biotecnologia Aplicada. 3(5):208-223.
1994TOLEDO, I, AGUIRRE, J and HANSBERG, W. (1994). "Enzyme inactivation related to a hyperoxidant state during conidiation of Neurospora crassa". MICROBIOLOGY-SGM. 140(9):2391-2397. [doi:10.1099/13500872-140-9-2391]7952190
1994ROMANOV, VI, HERNANDEZLUCAS, I and Martínez-Romero, E. (1994). "CARBON METABOLISM ENZYMES OF Rhizobium-tropici CULTURES AND BACTEROIDS". Applied And Environmental Microbiology. 60(7):2339-2342. 16349319
1994Garduño- Juárez, R. and Romero, D. (1994). "Heuristic methods in conformational space search of peptides". THEOCHEM-J MOL STRUC. 308(C):115-123. [doi:10.1016/0166-1280(94)80097-9]
1994CABALLEROMELLADO, J and Martínez-Romero, E. (1994). "LIMITED GENETIC DIVERSITY IN THE ENDOPHYTIC SUGARCANE BACTERIUM Acetobacter-diazotrophicus". Applied And Environmental Microbiology. 60(5):1532-1537. 16349254
1994Martínez-Romero, E. (1994). "Recent developments in Rhizobium taxonomy". PLANT AND SOIL. 161(1):11-20. [doi:10.1007/BF02183081]
1994ROMANOV, VI and Martínez-Romero, E. (1994). "Sucrose transport and hydrolysis in Rhizobium tropici". PLANT AND SOIL. 161(1):91-96. [doi:10.1007/BF02183088]
1994GRAHAM, PH, DRAEGER, KJ, FERREY, ML, CONROY, MJ, HAMMER, BE, Martínez-Romero, E, AARONS, SR and QUINTO, C. (1994). "Acid pH tolerance in strains of Rhizobium and Bradyrhizobium, and initial studies on the basis for acid tolerance of Rhizobium trpici UMR1899". Canadian Journal Of Microbiology. 40(3):198-207. [doi:10.1139/m94-033]
1994PARDO, MA, LAGUNEZ, J, MIRANDA, J and Martínez-Romero, E. (1994). "NODULATING ABILITY OF Rhizobium-tropici IS CONDITIONED BY A PLASMID-ENCODED CITRATE SYNTHASE". Molecular Microbiology. 11(2):315-321. [doi:10.1111/j.1365-2958.1994.tb00311.x]8170393
1994Soto, M.J., Zorzano, A., Garcia-Rodriguez, F.M., Mercado-Blanco, J., López-Lara, IM, Olivares, J. and Toro, N.. (1994). "Identification of a novel Rhizobium meliloti nodulation efficiency nfe gene homolog of Agrobacterium ornithine cyclodeaminase". Molecular Plant-Microbe Interactions. 7(6):703-707. [doi:10.1094/MPMI-7-0703]7873778
1993POUPOT, R, Martínez-Romero, E and PROME, JC. (1993). "Nodulation Factors from Rhizobium tropici Are Sulfated or Nonsulfated Chitopentasaccharides Containing an N-Methyl-N-acylglucosaminyl Terminus". Biochemistry. 32(39):10430-10435. [doi:10.1021/bi00090a019]8399187
1993MORETT, E and SEGOVIA, L. (1993). "THE SIGMA(54) BACTERIAL ENHANCER-BINDING PROTEIN FAMILY - MECHANISM OF ACTION AND PHYLOGENETIC RELATIONSHIP OF THEIR FUNCTIONAL DOMAINS". Journal Of Bacteriology. 175(19):6067-6074. [doi:10.1128/jb.175.19.6067-6074.1993]8407777
1993CALDERON, J and MARTINEZ, LM. (1993). "REGULATION OF AMMONIUM ION ASSIMILATION ENZYMES IN NEUROSPORA-CRASSA nit-2 AND ms-5 MUTANT STRAINS". BIOCHEMICAL GENETICS. 31(9-10):425-439. [doi:10.1007/BF00553459]7907211
1993FUENTES, SI, SUAREZ, R, VILLEGAS, T, ACERO, LC and Hernández, G. (1993). "EMBRYOGENIC RESPONSE OF MEXICAN ALFALFA (Medicago-sativa) VARIETIES". Plant Cell Tissue And Organ Culture. 34(3):299-302. [doi:10.1007/BF00029720]
1993Collado-Vides, J. (1993). "The elements for a classification of units of genetic information with a combinatorial component". JOURNAL OF THEORETICAL BIOLOGY. 163(4):527-548. [doi:10.1006/jtbi.1993.1136]8246512
1993Flores López, Margarita, Brom, S, Stepkowsky, Tomász, Girard, L, Dávila Ramos, José Guillermo, Romero, D and Palacios de la Lama, Rafael. (1993). "Gene amplification in Rhizobium: Identification and in vivo cloning of discrete amplifiable DNA regions (amplicons) from Rhizobium leguminosarum biovar phaseoli". PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 90(11):4932-4936. [doi:10.1073/pnas.90.11.4932]8506337
1993López-Lara, IM, Orgambide, G., Dazzo, F.B., Olivares, J. and Toro, N.. (1993). "Characterization and symbiotic importance of acidic extracellular polysaccharides of Rhizobium sp. strain GRH2 isolated from Acacia nodules". Journal Of Bacteriology. 175(10):2826-2832. [doi:10.1128/jb.175.10.2826-2832.1993]8491702
1993Segovia, L., Young, J.P.W. and Martínez-Romero, E. (1993). "Reclassification of American Rhizobium leguminosarum biovar phaseoli type I strains as Rhizobium etli sp. nov.". INTERNATIONAL JOURNAL OF SYSTEMATIC BACTERIOLOGY. 43(2):374-377. [doi:10.1099/00207713-43-2-374]8494746
1993Collado-Vides, J. (1993). "A linguistic representation of the regulation of transcription initiation. II. Distinctive features of sigma 70 promoters and their regulatory binding sites". Biosystems. 29(2-3):105-128. [doi:10.1016/0303-2647(93)90087-S]8374063
1993Collado-Vides, J. (1993). "A linguistic representation of the regulation of transcription initiation. I. An ordered array of complex symbols with distinctive features". Biosystems. 29(2-3):87-104. [doi:10.1016/0303-2647(93)90086-R]8374070
1992Collado-Vides, J. (1992). "Grammatical model of the regulation of gene expression". PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 89(20):9405-9409. [doi:10.1073/pnas.89.20.9405]1409648
1992Brom, S, García-de los Santos, A, STEPKOWSKI, T, FLORES, M, DAVILA, G, Romero, D and PALACIOS, R. (1992). "DIFFERENT PLASMIDS OF Rhizobium-leguminosarum BV phaseoli ARE REQUIRED FOR OPTIMAL SYMBIOTIC PERFORMANCE". Journal Of Bacteriology. 174(16):5183-5189. [doi:10.1128/jb.174.16.5183-5189.1992]1644746
1992ILANGOVAN, K, SALAZAR, M, DASH, S, MONROY, OH and RAMOS, CA. (1992). "INTERACTION OF CADMIUM, COPPER AND ZINC IN CHLORELLA-PYRENOIDOSA CHICK". ENVIRONMENTAL TECHNOLOGY. 13(2):195-199. [doi:10.1080/09593339209385144]
1992LARAOCHOA, F and HERRERA, A. (1992). "A DYNAMIC-MODEL FOR A COOPERATIVE ENZYME". JOURNAL OF THEORETICAL BIOLOGY. 154(2):189-204. [doi:10.1016/S0022-5193(05)80402-3]1573904
1992Soto, M.J., Lepek, V., López-Lara, IM, Olivares, J. and Toro, N.. (1992). "Characterization of a Rhizobium meliloti ndvB Mutant and a Symbiotic Revertant that Regains Wild-Type Properties". Molecular Plant-Microbe Interactions. 5(4):288-293. [doi:10.1094/MPMI-5-288]
1992Morales, L.B., Garduñojuárez, R. and Romero, D. (1992). "The multiple-minima problem in small peptides revisited. The threshold accepting approach". J BIOMOL STRUCT DYN. 9(5):951-957. [doi:10.1080/07391102.1992.10507969]1524708
1991Collado-Vides, J, MAGASANIK, B and GRALLA, JD. (1991). "Control site location and transcriptional regulation in Escherichia coli". MICROBIOLOGICAL REVIEWS. 55(3):371-394. 1943993
1991Padilla, Jaime E, Miranda Ríos, Juan and Sánchez Rodríguez, Federico Esteban. (1991). "NODULIN REGULATION IN COMMON BEAN NODULES INDUCED BY BACTERIAL MUTANTS". Molecular Plant-Microbe Interactions. 4(5):433-439. [doi:10.1094/MPMI-4-433]
1991Collado-Vides, J. (1991). "The search for a grammatical theory of gene regulation is formally justified by showing the inadequacy of context-free grammars". Bioinformatics. 7(3):321-326. [doi:10.1093/bioinformatics/7.3.321]1913213
1991Martínez-Romero, E, SEGOVIA, L, MERCANTE, FM, FRANCO, AA, GRAHAM, P and PARDO, MA. (1991). "Rhizobium tropici, a novel species nodulating Phaseolus vulgaris L. beans and Leucaena sp. trees". INTERNATIONAL JOURNAL OF SYSTEMATIC BACTERIOLOGY. 41(3):417-426. [doi:10.1099/00207713-41-3-417]1715738
1991Girard, L, FLORES, M, Brom, S, Romero, D, PALACIOS, R and DAVILA, G. (1991). "Structural complexity of the symbiotic plasmid of Rhizobium leguminosarum bv. phaseoli". Journal Of Bacteriology. 173(8):2411-2419. [doi:10.1128/jb.173.8.2411-2419.1991]2013564
1991Lara Ochoa, José Manuel Francisco. (1991). "A DYNAMIC-MODEL FOR PHOSPHOLIPID CALCIUM-BINDING". BIOPHYSICAL CHEMISTRY. 40(2):207-215. [doi:10.1016/0301-4622(91)87010-3]17014780
1991TOLEDO, I, Noronha-Dutra, A.A. and HANSBERG, W. (1991). "Loss of NAD(P)-reducing power and glutathione disulfide excretion at the start of induction of aerial growth in Neurospora crassa". Journal Of Bacteriology. 173(10):3243-3249. [doi:10.1128/jb.173.10.3243-3249.1991]1827113
1991MARTINEZSALAZAR, JM, Romero, D, Girard, L and DAVILA, G. (1991). "Molecular cloning and characterization of the recA gene of Rhizobium phaseoli and construction of recA mutants". Journal Of Bacteriology. 173(10):3035-3040. [doi:10.1128/jb.173.10.3035-3040.1991]2022610
1991SOBERONCHAVEZ, G, NAJERA, R, ESPIN, G and MORENO, S. (1991). "FORMATION OF Rhizobium-phaseoli SYMBIOTIC PLASMIDS BY GENETIC-RECOMBINATION". Molecular Microbiology. 5(4):909-916. [doi:10.1111/j.1365-2958.1991.tb00765.x]1857210
1991Romero, D, Brom, S, MARTINEZSALAZAR, J, Girard, L, PALACIOS, R and DAVILA, G. (1991). "Amplification and deletion of a nod-nif region in the symbiotic plasmid of Rhizobium phaseoli". Journal Of Bacteriology. 173(8):2435-2441. [doi:10.1128/jb.173.8.2435-2441.1991]2013567
1991SEGOVIA, L, PINERO, D, PALACIOS, R and Martínez-Romero, E. (1991). "Genetic structure of a soil population of nonsymbiotic Rhizobium leguminosarum". Applied And Environmental Microbiology. 57(2):426-433. 1707606
1991Collado-Vides, J. (1991). "A syntactic representation of units of genetic information-A syntax of units of genetic information". JOURNAL OF THEORETICAL BIOLOGY. 148(3):401-429. [doi:10.1016/S0022-5193(05)80245-0]2016901
1991LARAOCHOA, F and LARAMORENO, E. (1991). "A DYNAMIC-MODEL FOR PHASE-TRANSITIONS OF LIPIDS INDUCED BY CALCIUM-IONS". JOURNAL OF THEORETICAL BIOLOGY. 148(3):295-304. [doi:10.1016/S0022-5193(05)80239-5]2016896
1991Brom, S, García-de los Santos, A, Girard, L, DAVILA, G, PALACIOS, R and Romero, D. (1991). "High-frequency rearrangements in Rhizobium leguminosarum bv. phaseoli plasmids". Journal Of Bacteriology. 173(3):1344-1346. [doi:10.1128/jb.173.3.1344-1346.1991]1991727
1991VAZQUEZ, M, Dávalos, A, DELASPENAS, A, SANCHEZ, F and QUINTO, C. (1991). "NOVEL ORGANIZATION OF THE COMMON NODULATION GENES IN Rhizobium-leguminosarum BV. phaseoli STRAINS". Journal Of Bacteriology. 173(3):1250-1258. [doi:10.1128/jb.173.3.1250-1258.1991]1991718
1991López-Lara, IM, Gálvez, A., Martínez Bueno, M., Maqueda, M. and Valdivia, E.. (1991). "Purification, characterization and biological effects of a second bacteriocin from Enterococcus faecalis subsp. liquefaciens S-48 and its mutant strain B-48-28". Canadian Journal Of Microbiology. 37(10):769-774.
1991JIMENEZMONTANO, MA and LARAOCHOA, F. (1991). "ON THE SKEW DISTRIBUTION OF IMMUNOGLOBULINS AND THE INVERTED PROTEIN-FOLDING PROBLEM". Biosystems. 24(4):261-267. [doi:10.1016/0303-2647(91)90045-M]1863715
1991Morales, L.B., Garduñojuárez, R. and Romero, D. (1991). "Applications of simulated annealing to the multiple-minima problem in small peptides". J BIOMOL STRUCT DYN. 8(4):721-735. [doi:10.1080/07391102.1991.10507841]2059338
1990CALDERON, J, MARTINEZ, LM and Mora, J. (1990). "Isolation and characterization of a Neurospora crassa mutant altered in the a polypeptide of glutamine synthetase". Journal Of Bacteriology. 172(9):4996-5000. [doi:10.1128/jb.172.9.4996-5000.1990]1975579
1990Mora, J. (1990). "Glutamine metabolism and cycling in Neurospora crassa". MICROBIOLOGICAL REVIEWS. 54(3):293-304. 2145504
1990Martínez-Romero, E and Rosenblueth, M. (1990). "Increased bean (Phaseolus vulgaris L.) nodulation competitiveness of genetically modified Rhizobium strains". Applied And Environmental Microbiology. 56(8):2384-2388.
1990Martínez-Romero, E and Rosenblueth, M. (1990). "INCREASED BEAN (Phaseolus-VULGARIS L) NODULATION COMPETITIVENESS OF GENETICALLY MODIFIED Rhizobium STRAINS". Applied And Environmental Microbiology. 56(8):2384-2388. 16348252
1990Romero, D. (1990). "Easy transportation-like problems on K-dimensional arrays". J OPTIMIZ THEORY APP. 66(1):137-147. [doi:10.1007/BF00940537]
1990TOLEDO, I and HANSBERG, W. (1990). "Protein oxidation related to morphogenesis inNeurospora crassa". EXPERIMENTAL MYCOLOGY. 14(2):184-189. [doi:10.1016/0147-5975(90)90077-7]
1990López-Lara, IM, Martínez-Bueno, M., Gálvez, A., Maqueda, M. and Valdivia, E.. (1990). "Induction of inhibitory agent produced by Enterococcus faecalis". FOLIA MICROBIOL. 35(2):124-129. [doi:10.1007/BF02820768]2116373
1990SOBERON, M, MEMBRILLOHERNANDEZ, J, AGUILAR, GR and SANCHEZ, F. (1990). "ISOLATION OF Rhizobium-phaseoli TN5-INDUCED MUTANTS WITH ALTERED EXPRESSION OF CYTOCHROME TERMINAL OXIDASE-O AND OXIDASE-AA3". Journal Of Bacteriology. 172(3):1676-1680. [doi:10.1128/jb.172.3.1676-1680.1990]2155209
1990HANSBERG, W and AGUIRRE, J. (1990). "HYPEROXIDANT STATES CAUSE MICROBIAL CELL-DIFFERENTIATION BY CELL ISOLATION FROM DIOXYGEN". JOURNAL OF THEORETICAL BIOLOGY. 142(2):201-221. [doi:10.1016/S0022-5193(05)80222-X]2352433
1990Montes, C., Amador, M., Cuevas, D. and CORDOBA, F. (1990). "SUBUNIT STRUCTURE OF KARATASIN, THE PROTEINASE ISOLATED FROM BROMELIA-PLUMIERI (KARATAS)". Agricultural And Biological Chemistry. 54(1):17-24. [doi:10.1080/00021369.1990.10869883]1368518
1990Romero, D and Sánchez-Flores, A.. (1990). "Methods for the one-dimensional space allocation problem". COMPUT OPER RES. 17(5):465-473. [doi:10.1016/0305-0548(90)90051-8]
1990Lara-Ochoa, F. and Bustos, P. (1990). "Conflicting density dependent dynamics of a bacterial population". APPLIED MATHEMATICS LETTERS. 3(4):81-84. [doi:10.1016/0893-9659(90)90052-D]
1990LARAOCHOA, F and Bustos, P. (1990). "A model for aggregation-dispersion dynamics of a population". Biosystems. 24(3):215-222. [doi:10.1016/0303-2647(90)90036-Z]2127375
1990Martínez-Romero, E, Romero, D and PALACIOS, R. (1990). "The Rhizobium Genome". CRITICAL REVIEWS IN PLANT SCIENCES. 9(1):59-93. [doi:10.1080/07352689009382282]
1990LARAOCHOA, F and Bustos, P. (1990). "Density dependent diffusional model of an infective population". Biosystems. 24(3):223-238. [doi:10.1016/0303-2647(90)90037-2]2073542
1989FOLCH, JL, ANTARAMIAN, A, RODRIGUEZ, L, BRAVO, A, Brunner, A. and GONZALEZ, A. (1989). "ISOLATION AND CHARACTERIZATION OF A saccharomyces-cerevisiae MUTANT WITH IMPAIRED GLUTAMATE SYNTHASE ACTIVITY". Journal Of Bacteriology. 171(12):6776-6781. [doi:10.1128/jb.171.12.6776-6781.1989]2687252
1989Aguirre, J., RODRIGUEZ, R and HANSBERG, W. (1989). "OXIDATION OF NEUROSPORA-CRASSA NADP-SPECIFIC GLUTAMATE-DEHYDROGENASE BY ACTIVATED OXYGEN SPECIES". Journal Of Bacteriology. 171(11):6243-6250. [doi:10.1128/jb.171.11.6243-6250.1989]2530208
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