Recent Publications (12 months)


# Year Title Links
1 2018 Solís-González, C.J., Domínguez-Malfavon, L., Vargas-Suárez, M., Gaytan, I., Cevallos, M.A., Lozano, L., Cruz-Gómez, MJ and Loza-Tavera, H. (2018). "Novel Metabolic Pathway For N-methylpyrrolidone Degradation in Alicycliphilus sp Strain BQ1". Appl Environ Microbiol. 84(1)   PUBMED: #29030443
2 2017 Alatorre-Fernández, P., Mayoral-Terán, C., Velázquez-Acosta, C., Franco-Rodriguez, C., Flores-Moreno, K., Cevallos, M.A., López-Vidal, Y. and Volkow-Fernandez, P. (2017). "A Polyclonal Outbreak Of Bloodstream Infections by Enterococcus faecium in Patients with Hematologic Malignancies". American Journal of Infection Control. 45(3):260-266   PUBMED: #27852447
3 2017 Aragón, W., Reina-Pinto, J.J. and Serrano, M. (2017). "The Intimate Talk between Plants and Microorganisms at the Leaf Surface". J Exp Bot. 68(19):5339-5350   PUBMED: #29136456
4 2017 Balderas-Martinez, Y.I., Rinaldi, F., Contreras, G., Solano-Lira, H., Sánchez-Pérez, M., Collado-Vides, J., Selman, M. and Pardo, A. (2017). "Improving Biocuration Of microRNAs in Diseases: a Case Study in Idiopathic Pulmonary Fibrosis". Database-the Journal of Biological Databases and Curation.   PUBMED: #28605770
5 2017 Bañuelos-Vazquez, L.A., Tejerizo, G.T. and Brom, S. (2017). "Regulation of Conjugative Transfer of Plasmids and Integrative Conjugative Elements". Plasmid. 91:82-89   PUBMED: #28438469
6 2017 Beardmore, R.E., Peña-Miller, R., Gori, F. and Iredell, J. (2017). "Antibiotic Cycling and Antibiotic Mixing: Which One Best Mitigates Antibiotic Resistance?". Mol Biol Evol. 34(4):802-817   PUBMED: #28096304
7 2017 Bustos, P., Santamaria, R.I., Pérez-Carrascal, O.M., Acosta, J.L., Lozano, L., Juárez, S., Martínez-Flores, I., Martínez-Romero, E., Romero, D., Dávila, G., Vinuesa, P., Miranda-Sánchez, F., Ormeño-Orrillo, E. and González, V. (2017). "Complete Genome Sequences Of Three Rhizobium gallicum Symbionts Associated With Common Bean (Phaseolus vulgaris)". Genome Announc. 5(11)   PUBMED: #28302777
8 2017 Cubillas, C., Miranda-Sánchez, F., González-Sánchez, A., Elizalde, J.P., Vinuesa, P., Brom, S. and (2017). "A Comprehensive Phylogenetic Analysis of Copper Transporting P-1b ATPases from Bacteria of the Rhizobiales Order Uncovers Multiplicity, Diversity and Novel Taxonomic Subtypes". Microbiologyopen. 6(4):-e452   PUBMED: #28217917
9 2017 Esposti, M.D. and Martínez-Romero, E. (2017). "The Functional Microbiome of Arthropods". Plos One. 12(5)   PUBMED: #28475624
10 2017 Fernández-Retana, J., Zamudio-Meza, H., Rodríguez-Morales, M., Pedroza-Torres, A., Isla-Ortíz, D., Herrera, L., Jacobo-Herrera, N., Peralta-Zaragoza, O., López-Camarillo, C., Morales-González, F., de León, D.C. and Pérez-Plasencia, C. (2017). "Gene Signature Based on Degradome-related Genes Can Predict Distal Metastasis in Cervical Cancer Patients". Tumor Biology. 39(6)   PUBMED: #28639897
11 2017 Freyre-González, J.A. and Tauch, A. (2017). "Functional Architecture And Global Properties Of the Corynebacterium glutamicum Regulatory Network: Novel Insights from a Dataset with a High Genomic Coverage". Journal of Biotechnology. 257:199-210   PUBMED: #27829123
12 2017 Gamez-Reyes, A., Becerra-Lobato, N., Ramírez-Trujillo, J.A., Martínez-Romero, E., Dunn, M.F. and Hernández-Lucas, I (2017). "The Rhizobium Leucaenae Cfn 299 pSym Plasmid Contains Genes Expressed in Free Life and Symbiosis, as well as Two Replication Systems". Annals of Microbiology. 67(3):263-273    
13 2017 Gil Valdes, J., Ramírez-Torres, A., Chiappe, D., Luna-Peñaloza, J., Fernández-Reyes, F.C., Arcos-Encarnación, B., Contreras-Martínez, S. and Encarnación, S. (2017). "Lysine Acetylation Stoichiometry and Proteomics Analyses Reveal Pathways Regulated by Sirtuin 1 in Human Cells". J Biol Chem. 292(44):18129-18144   PUBMED: #28893905
14 2017 Grana-Miraglia, L., Lozano, L., Velázquez, C., Volkow-Fernández, P., Pérez-Oseguera, A., Cevallos, M.A. and Castillo-Ramírez, S. (2017). "Rapid Gene Turnover as a Significant Source of Genetic Variation in a Recently Seeded Population of a Healthcare-associated Pathogen". Frontiers in Microbiology. 8:-1817   PUBMED: #28979253
15 2017 Hernández-Vargas, M.J., Gil Valdes, J., Lozano, L., Pedraza-Escalona, M., Ortíz, E., Encarnación, S., Alagon, A. and Corzo, G. (2017). "Proteomic And Transcriptomic Analysis Of Saliva Components from the Hematophagous Reduviid Triatoma Pallidipennis". Journal of Proteomics. 162:30-39   PUBMED: #28442446
16 2017 Iñiguez-Rabago, L.P., Ramirez, M., Barbazuk, W.B. and Hernández, G. (2017). "Identification and Analysis Of Alternative Splicing Events in Phaseolus vulgaris and Glycine max". BMC Genomics. 18:-650   PUBMED: #28830361
17 2017 Ledezma-Tejeida, D., Ishida, C. and Collado-Vides, J. (2017). "Genome-wide Mapping Of Transcriptional Regulation and Metabolism Describes Information-processing Units in Escherichia coli". Frontiers in Microbiology. 8   PUBMED: #28824593
18 2017 Link, V., Aguilar-Gomez, D., Ramírez-Suastegui, C., Hurst, L.D. and Cortéz, D. (2017). "Male Mutation Bias is the Main Force Shaping Chromosomal Substitution Rates in Monotreme Mammals". Genome Biol. Evol.. 9(9):2198-2210   PUBMED: #28922870
19 2017 López-Lara, I.M. and Geiger, O. (2017). "Bacterial Lipid Diversity". Bba-mol Cell Biol L. 1862(11):1287-1299   PUBMED: #27760387
20 2017 Marin, R., Cortéz, D., Lamanna, F., Pradeepa, M.M., Leushkin, E., Julien, P., Liechti, A., Halbert, J., Bruning, T., Mossinger, K., Trefzer, T., Conrad, C., Kerver, H.N., Wade, J., Tschopp, P. and Kaessmann, H. (2017). "Convergent Origination Of a Drosophila-like Dosage Compensation Mechanism in a Reptile Lineage". Genome Res. 27(12):1974-1987   PUBMED: #29133310
21 2017 Martinez-Flores, W.A., Palma-Garcia, J.M., Caballero-Ortega, H., Del Viento-Camacho, A., López-Escamilla, E., Martínez-Hernández, F., Vinuesa, P., Correa, D. and Maravilla, P. (2017). "Genotyping Toxoplasma Gondii with the B1 Gene in Naturally Infected Sheep from an Endemic Region in the Pacific Coast of Mexico". Vector-borne and Zoonotic Diseases. 17(7):495-502   PUBMED: #28530509
22 2017 Masforrol, Y., Gil Valdes, J., García, D., Noda, J., Ramos, Y., Betancourt, L., Guirola, O., González, S., Acevedo, B., Besada, V., Reyes, O. and González, L.J. (2017). "A Deeper Mining On the Protein Composition of VA-MENGOC-BC (r): an OMV-based Vaccine against N-meningitidis Serogroup B and C". Human Vaccines Anda Imminotheraéutics. 13(11):2548-2560   PUBMED: #29083947
23 2017 Méndez-Cruz, C.F., Gama-Castro, S., Mejia-Almonte, C., Castillo-Villalba, M.P., Muñíz-Rascado, L. and Collado-Vides, J. (2017). "First Steps In Automatic Summarization of Transcription Factor Properties for RegulonDB: Classification of Sentences about Structural Domains and Regulated Processes". Database-the Journal of Biological Databases and Curation.    
24 2017 Meneses, N., Taboada, H., Dunn, M.F., Vargas, M.C., Buchs, N., Heller, M. and Encarnación, S. (2017). "The Naringenin-induced Exoproteome of Rhizobium etli CE3". Arch Microbiol. 1-19   PUBMED: #28255691
25 2017 Ochoa-Sanchez, L.E. and Vinuesa, P. (2017). "Evolutionary Genetic Analysis Uncovers Multiple Species With Distinct Habitat Preferences and Antibiotic Resistance Phenotypes in the Stenotrophomonas maltophilia Complex". Frontiers in Microbiology. 8:-1548   PUBMED: #28861062
26 2017 Ortíz-Berrocal, M., Lozano, L., Sánchez-Flores, A., Nava, N., Hernández, G. and Reddy, P.M. (2017). "Expression In Rice of an Autoactive Variant of Medicago truncatula Dmi3, the Ca+2/calmodulin-dependent Protein Kinase from the Common Symbiotic Pathway Modifies Root Transcriptome and Improves Mycorrhizal Colonization". Plant Biotechnology Reports. 11(5):271-287    
27 2017 Osorio, A., Camarena, L., Cevallos, M.A. and Poggio, S. (2017). "A New Essential Cell Division Protein in Caulobacter Crescentus". J Bacteriol. 199(8)   PUBMED: #28167520
28 2017 Pannier, L., Merino, E., Marchal. K. and Collado-Vides, J. (2017). "Effect of Genomic Distance on Coexpression of Coregulated Genes in e. coli". Plos One. 12(4)   PUBMED: #28419102
29 2017 Pérez-Morales, D., Banda, M.M., Chau, N.Y.E., Salgado, H., Martínez-Flores, I., Ibarra, J.A., Ilyas, B., Coombes, B.K. and Bustamante, V.H. (2017). "The Transcriptional Regulator Ssrb is Involved in a Molecular Switch Controlling Virulence Lifestyles of Salmonella". Plos Pathogens. 13(7):-e1006497   PUBMED: #28704543
30 2017 Rinaldi, F., Lithgow, O., Gama-Castro, S., Solano-Lira, H., López-Fuentes, A., Muñíz-Rascado, L., Ishida, C., Méndez-Cruz, C.F. and Collado-Vides, J. (2017). "Strategies towards Digital And Semi-automated Curation In RegulonDB". Database-the Journal of Biological Databases and Curation.   PUBMED: #28365731
31 2017 Sandoval-Calderón, M., Guan, Z.Q. and Sohlenkamp, C. (2017). "Knowns and Unknowns of Membrane Lipid Synthesis in Streptomycetes". Biochimie. 141:21-29   PUBMED: #28522365
32 2017 Santillán, O., Ramírez-Romero, M.Á. and Dávila, G. (2017). "CAPRRESI: Chimera Assembly By Plasmid Recovery and Restriction Enzyme Site Insertion". Jove-journal of Visualized Experiments. (124)-e55526   PUBMED: #28671650
33 2017 Saucedo-Mora, M.A., Castaneda-Tamez, P., Cazares, A., Pérez-Velázquez, J., Hense, B.A., Cazares, D., Figueroa, W., Carballo, M., Guarneros, G., Pérez-Eretza, B., Cruz, N., Nishiyama, Y., Maeda, T., Belmont-Díaz, J.A., Wood, T.K. and García-Contreras, R. (2017). "Selection Of Functional Quorum Sensing Systems by Lysogenic Bacteriophages in Pseudomonas Aeruginosa". Frontiers in Microbiology. 8:-1669   PUBMED: #28912771
34 2017 Sigala, J.C., Suárez, B.P., Lara, A.R., Le Borgne, S., Bustos, P., Santamaria, R.I., González, V. and Martínez, A. (2017). "Genomic and Physiological Characterization Of a Laboratory-isolated Acinetobacter Schindleri ACE Strain that Quickly and Efficiently Catabolizes Acetate". Microbiology-sgm. 163(7):1052-1064   PUBMED: #28671531
35 2017 Vargas, M.C., Mora, Y., Díaz-Mendez, R., Martínez-Batallar, Á.G., Girard, L., Encarnación, S., Peralta, H. and Mora, J. (2017). "Overproduction Of Sinorhizobium meliloti argC (N-acetyl-gamma-glutamyl Phosphate Reductase) Promotes Growth Delay and Inefficient Nodules". FEMS Microbiol Lett. 364(23):-fnx233   PUBMED: #29121239
36 2017 Vences-Guzmán, M.Á., Goetting-Minesky, M.P., Guan, Z.Q., Castillo-Ramírez, S., Cordoba-Castro, L.A., López-Lara, I.M., Geiger, O., Sohlenkamp, C. and Fenno, J.C. (2017). "1,2-Diacylglycerol Choline Phosphotransferase Catalyzes the Final Step In the Unique Treponema denticola Phosphatidylcholine Biosynthesis Pathway". Mol Microbiol. 103(5):896-912   PUBMED: #28009086
37 2017 Vera-Ponce de León, A., Ormeno-Orrillo, E., Ramírez-Puebla, T., Rosenblueth, M., Esposti, M.D., Martínez, J. and Martínez-Romero, E. (2017). "Candidatus Dactylopiibacterium Carminicum, A Nitrogen-fixing Symbiont Of Dactylopius Cochineal Insects (Hemiptera: COCCOIDEA: DACTYLOPIIDAE)". Genome Biol. Evol.. 9(9):2237-2250    
38 2017 Vicens, A., Andrade-López, K., Cortéz, D., Gutiérrez, R.M. and Treviño, L.G. (2017). "Premammalian Origin Of the Sperm-Specific Slo3 Channel". FEBS Open BIO. 3:382-390   PUBMED: #28286733
39 2017 Wu, Z.Q., Sloan, D.B., Brown, C.W., Rosenblueth, M., Palmer, J.D. and Ong, H.C. (2017). "Mitochondrial Retroprocessing Promoted Functional Transfers of rpl5 to the Nucleus in Grasses". Mol Biol Evol. 34(9):2340-2354   PUBMED: #28541477