Book Chapters


  1. Palacios R.; Blanco L.; Calva A.; Campomanes M.; Chávez O.; Collado J.; López S.; De la Pena J.M.; Sánchez F. y Sánchez S. "Neurospora crassa Glutamine Synthetase: A Model to Study Gene Expression in Eukaryotes." (1980) In: Glutamine: Metabolism, Enzymology and Regulation Eds. Mora J. and Palacios R. Academic Press N.Y. pp.167-184.
  2. Collado-Vides J. (1989) "Towards a Grammatical Paradigm for the Study of Gene Expression Regulation" In: Theoretical Biology Eds. Goodwin B. y Saunders P. Edinburgh University Press. pp. 211-224.
  3. Collado-Vides J. (1993) "A Linguistic Integration of a Biological Database" In: Proceedings of the Second International Conference on Bioinformatics, Supercomputing, and Complex Genome Analysis eds. H.A. Lim H.A. , Fickett J.W., Cantor C.R. and Robbins R.J. .World Scientific Publ.Co., Singapore, pp.487-499.
  4. Collado-Vides J. (1995) "Some ideas towards a grammatical model of the S54 bacterial promoters" Proceedings of the International Symposium on Intelligence in Neural and Biological Systems IEEE Press pp. 46-53.
  5. Gralla J.D., and Collado-Vides J. (1996) "Organization and Function of Transcription Regulatory Elements"
    chap. 79 In: Neidhardt F.C., Curtiss III R., Ingraham J., Lin E.C.C.,
    Low K.B., Magasanik B., Reznikoff W., Schaechter M., Umbarger H.E. and
    Riley M. (eds) Cellular and Molecular Biology: Escherichia coli and
    Salmonella. 2nd ed. Washington, D.C. American Society for Microbiology
    pp.1232-1245.
  6. Collado-Vides J. (1996) "A Linguistic Integrative Approach to the Study of the Regulation of Gene Expression" In: . Collado-Vides J., Magasanik B. and Smith T. (eds). "Integrative Approaches to Molecular Biology, MIT Press pp.179-203.
  7. Thieffry, D., Rosenblueth, D. A., Huerta, A. M., Salgado, H. and Collado-Vides, J. (1996). "Definite-Clause Grammars for the analysis of cis-regulatory regions in E. coli." In: Altman, R., Dunker, K., Hunter, L. and Klein, T. (eds.). Proceedings of the Pacific Symposium on Biocomputing'97. World Scientific, Singapor, pp. 441- 452.
  8. De la Vega F.M., Thieffry D., and Collado-Vides J.(1996) "Extracting Biological Information from DNA Sequence" In: Altman, R., Dunker, K., Hunter, L. and Klein, T. (eds.). Proceedings of the Pacific Symposium on Biocomputing '97. World Scientific, Singapore, pp 6-7.
  9. Collado-Vides J., Huerta A, and Klose K. (1997) "Three models of gene regulation in E. coli" in: Hofestadt R., Lengauer T., Löffler M., Schomburg D. (eds) Bioinformatics Lecture Notes in Computer Science 1278, Springer-Verlag, Berlin, pp.72-78.
  10. Dávila G., Brom S., Collado J., Hernández G., Mora J., Palacios R. and Romero R. (in press) " Genomics of Rhizobium etli" In: Nitrogen Fixation in Bacteria: Molecular and Cellular Biology. Horizon Scientific Press. Wymondham, UK. pp. 671-678.
  11. Collado-Vides J., y Moreno-Hagelsieb G. (2001) "Escherichia coli en estudios post-genómicos microbianos" In: (ed) Martínez Romero E. y Martínez Romero J. "Microbios en Línea" UNAM pp. 365-373.
  12. Collado-Vides J., Gabriel
    Moreno-Hagelsieb G., Pérez-Rueda E., Salgado H., Huerta A.M., Gutiérrez
    R.M. Rosenblueth D.A., Christen A., Benítez-Bellón E., Medrano-Soto A.,
    Socorro Gama-Castro S., Santos-Zavaleta A., Bonavides-Martínez C.,
    Díaz-Peredo E., Fabiola Sánchez-Solano and Millán D.M. (2002) "Genomics of Gene Regulation: The view from Escherichia coli" In: Gene Regulation and Metabolism: Post-Genomic Computational Approaches eds. Collado-Vides J. and
    Hofestadt R. MIT Press pp. 103-128
    .
  13. Collado Vides, J. Medrano Soto, A. (2003) "La biología computacional antes, durante y después de los genomas". En: Fronteras de la biología en los inicios del siglo XXI , Módulo 1 Genómica, Proteómica y Bioinformática. (Coord. Bolivar Zapata,F.G.). El Colegio Nacional. pp 155-168.