Functional Genomics of Prokaryotes Program


# Año Ficha Ligas
1 2018 Toledo-Leyva, A., Villegas-Pineda, J.C., Encarnación, S., Gallardo-Rincón, D. and Talamas-Rohana, P. (2018). "Effect of Ovarian Cancer Ascites on SKOV-3 Cells Proteome: New Proteins Associated with Aggressive Phenotype in Epithelial Ovarian Cancer". Proteome Sci. 16   PUBMED: #29456457
2 2017 Encarnación, S. (2017). "The Dawn and the First Twenty-five Years of Proteomics in Mexico: a Personal Chronicle - el Nacimiento y los 25 Primeros años de La Proteómica en México: Una Crónica Personal". Boletín Médico del Hospital Infantil de México. 74(3):208-211   PUBMED: #29382488
3 2017 Gamez-Reyes, A., Becerra-Lobato, N., Ramírez-Trujillo, J.A., Martínez-Romero, E., Dunn, M.F. and Hernández-Lucas, I (2017). "The Rhizobium Leucaenae Cfn 299 pSym Plasmid Contains Genes Expressed in Free Life and Symbiosis, as well as Two Replication Systems". Annals of Microbiology. 67(3):263-273    
4 2017 García-Gómez, E., Jaso-Vera, M.E., Juárez-Verdayes, M.A., Alcántar-Curiel, M.D., Betanzos-Cabrera, G., Peralta, H., Rodríguez-Martínez, S., Cancino-Díaz, M.E., Jan-Roblero, J. and Cancino-Díaz, J.C. (2017). "The 95 Delta G Mutation in the 5untranslated Region of the Nora Gene Increases Efflux Activity in Staphylococcus Epidermidis Isolates". Microbial Pathogenesis. 103:139-148   PUBMED: #28017900
5 2017 Gil Valdes, J., Ramírez-Torres, A., Chiappe, D., Luna-Peñaloza, J., Fernández-Reyes, F.C., Arcos-Encarnación, B., Contreras-Martínez, S. and Encarnación, S. (2017). "Lysine Acetylation Stoichiometry and Proteomics Analyses Reveal Pathways Regulated by Sirtuin 1 in Human Cells". J Biol Chem. 292(44):18129-18144   PUBMED: #28893905
6 2017 Gil Valdes, J., Ramírez-Torres, A. and Encarnación, S. (2017). "Lysine Acetylation and Cancer: a Proteomics Perspective". Journal of Proteomics. 150:297-309   PUBMED: #27746255
7 2017 Hernández-Vargas, M.J., Gil Valdes, J., Lozano, L., Pedraza-Escalona, M., Ortíz, E., Encarnación, S., Alagon, A. and Corzo, G. (2017). "Proteomic And Transcriptomic Analysis Of Saliva Components from the Hematophagous Reduviid Triatoma Pallidipennis". Journal of Proteomics. 162:30-39   PUBMED: #28442446
8 2017 Herrera, Y., Contreras, S., Hernández, M., Álvarez, L., Mora Y. and Encarnación, S. (2017). "Displacers Improve the Selectivity of Phosphopeptide Enrichment by Metal Oxide Affinity Chromatography". Boletín Médico del Hospital Infantil de México. 74(3):200-207   PUBMED: #29382487
9 2017 Meneses, N., Taboada, H., Dunn, M.F., Vargas, M.C., Buchs, N., Heller, M. and Encarnación, S. (2017). "The Naringenin-induced Exoproteome of Rhizobium etli CE3". Arch Microbiol. 1-19   PUBMED: #28255691
10 2017 Patiño-López, G. and Encarnación, S. (2017). "Clinical Proteomics in Mexico: where do We Stand?". Boletín Médico del Hospital Infantil de México. 74(3):173-174   PUBMED: #29382483
11 2017 Rogel, M.A., Guerrero, G., Rincón-Molina, C.I., Ruíz-Valdiviezo, V.M., Cisneros-Pérez, C., Castañón-González, J.H., López-López, A., Martínez-Romero, E. and Rincón-Rosales, R. (2017). "Genome Sequence Of Acinetobacter Lactucae Otec-02, Isolated from Hydrocarbon Contaminated Soil". Genome Announc. 5(21)   PUBMED: #28546491
12 2017 Ruíz-Valdiviezo, V.M., Rogel, M.A., Guerrero, G., Rincón-Molina, C.I., García-Pérez, L.G., Villalobos-Maldonado, J.J., López-López, A., Martínez-Romero, E. and Rincón-Rosales, R. (2017). "Complete Genome Sequence Of A Novel Nonnodulating Rhizobium Species Isolated from Agave Americana L. Rhizosphere". Genome Announc. 5(46)   PUBMED: #29146860
13 2017 Vargas, M.C., Mora, Y., Díaz-Mendez, R., Martínez-Batallar, Á.G., Girard, L., Encarnación, S., Peralta, H. and Mora, J. (2017). "Overproduction Of Sinorhizobium meliloti argC (N-acetyl-gamma-glutamyl Phosphate Reductase) Promotes Growth Delay and Inefficient Nodules". FEMS Microbiol Lett. 364(23):-fnx233   PUBMED: #29121239
14 2016 Aguilar, A., Peralta, H., Mora, Y., Díaz-Mendez, R., Vargas, M.C., Girard, L. and Mora, J. (2016). "Genomic Comparison Of Agrobacterium Pusense Strains Isolated From Bean Nodules". Frontiers in Microbiology. 7   PUBMED: #27833604
15 2016 Alfonso-Gordillo, G., Cristiani-Urbina, E., Flores-Ortiz, C.M., Peralta, H., Cancino-Díaz, J.C., Cruz-Maya, J.A. and Jan-Roblero, J. (2016). "Stenotrophomonas maltophilia Isolated From Gasoline-contaminated Soil is Capable of Degrading Methyl Tert-butyl Ether". Electronic Journal of Biotechnology. 23(12):20    
16 2016 Alvarado-Delgado, A., OrtÍz, G.P., Tello-LÓpez, A.T., Encarnación, S., Conde, R., Martínez-Batallar, Á.G., Moran-Francia, K. and Lanz-Mendoza, H. (2016). "Infection With Plasmodium Berghei Ookinetes Alters Protein Expression In The Brain of Anopheles albimanus Mosquitoes". Parasites and Vectors. 9   PUBMED: #27724938
17 2016 Castillo, B.M., Dunn, M.F., Navarro, K.G., Hernández, M., Guevara, S.E. and Palacios, G.H. (2016). "Antifungal Performance Of Extracellular Chitinases And Culture Supernatants Of Streptomyces galilaeus CFFSUR-B12 against Mycosphaerella Fijiensis Morelet". World J Microbiol Biotechnol. 32(3)   PUBMED: #26873555
18 2016 Diener, C., Muñoz-González, F., Encarnación, S. and Resendis-Antonio, O. (2016). "The Space of Enzyme Regulation in Hela Cells Can be Inferred from Its Intracellular Metabolome". Sci Rep. 6:28415   PUBMED: #27335086
19 2016 Guzmán-Flores, J.M., Flores-Pérez, E.C., Hernández, M., López-Briones, S., Ramírez-Emiliano, J., Encarnación, S. and Pérez-Vázquez, V. (2016). "Comparative Proteomics of Liver of the Diabetic Obese DB/DB and Non-obese or Diabetic Mice". Current Proteomics. 13(3):231-236    
20 2016 López-Chávez, M.Y., Guillen-Navarro, K., Bertolini, V., Encarnación, S., Hernández, M., Sánchez-Moreno, I. and Damón, A. (2016). "Proteomic And Morphometric Study Of The in vitro Interaction between Oncidium Sphacelatum Lindl. (orchidaceae) And Thanatephorus sp RG26 (ceratobasidiaceae)". Mycorrhiza. 26(5):353-365   PUBMED: #26732875
21 2016 Peralta, H., Aguilar, A., Díaz-Mendez, R., Mora, Y., Martínez-Batallar, Á.G., Salazar, E., Vargas, M.C., Martínez-Romero, E., Encarnación, S., Girard, L. and Mora, J. (2016). "Genomic Studies Of Nitrogen-fixing Rhizobial Strains from Phaseolus vulgaris Seeds and Nodules". BMC Genomics. 17   PUBMED: #27601031
22 2016 Ramirez, M., Iñiguez-Rabago, L.P., Guerrero, G., Sparvoli, F. and Hernández, G. (2016). "Rhizobium etli Bacteroids Engineered For Vitreoscilla Hemoglobin Expression Alleviate Oxidative Stress In Common Bean Nodules that Reprogramme Global Gene Expression". Plant Biotechnology Reports. 10(6):463-474    
23 2016 Ramírez-Trujillo, J.A., Dunn, M.F., Suárez-Rodríguez, R. and Hernández-Lucas, I. (2016). "The Sinorhizobium meliloti Glyoxylate Cycle Enzyme Isocitrate Lyase (acea) is Required for the Utilization of Poly-beta-hydroxybutyrate during Carbon Starvation". Annals of Microbiology. 66(2):921-924    
24 2016 Reyes-Pérez, A., Vargas, M.C., Hernández, M., Aguirre-von-Wobeser, E., Pérez-Rueda, E. and Encarnación, S. (2016). "Transcriptomic Analysis of the Process of Biofilm Formation in Rhizobium etli CFN42". Arch Microbiol. 198(9):847-860   PUBMED: #27226009
25 2016 Santillán, O., Ramírez-Romero, M.Á., Lozano, L., Checa, A., Encarnación, S. and Dávila, G. (2016). "Region 4 Of Rhizobium etli Primary Sigma Factor (siga) Confers Transcriptional Laxity in Escherichia coli". Frontiers in Microbiology. 7   PUBMED: #27468278
26 2015 Dunn, M.F. (2015). "Key Roles Of Microsymbiont Amino Acid Metabolism in Rhizobia-legume Interactions". Crit. Rev. Microbiol.. 41(4):411-451   PUBMED: #24601835
27 2015 Gutiérrez-Roman, M.I., Holguin-Melendez, F., Dunn, M.F., Guillén-Navarro, K. and Huerta-Palacios, G. (2015). "Antifungal Activity Of Serratia marcescens CFFSUR-B2 Purified Chitinolytic Enzymes And Prodigiosin against Mycosphaerella Fijiensis, Causal Agent Of Black Sigatoka In Banana (Musa spp.)". Biocontrol. 60(4):565-572    
28 2015 Hernández, V.M., Hernández, V.M., Girard, L., Hernández-Lucas, I, Vazquez, A., Ortíz-Ortíz, C., Díaz-Mendez, R. and Dunn, M.F. (2015). "Genetic And Biochemical Characterization of Arginine Biosynthesis in Sinorhizobium meliloti 1021". Microbiology-sgm. 161:1671-1682   PUBMED: #26271664
29 2015 Ormeño-Orrillo, E., Servín-Garcidueñas, L.E., Rogel, M.A., González, V., Peralta, H., Mora, J., Martínez, J. and Martínez-Romero, E. (2015). "Taxonomy of Rhizobia And Agrobacteria from the Rhizobiaceae Family in Light of Genomics". Syst Appl Microbiol. 38(4):287-291   PUBMED: #25660942
30 2015 Ramón-Pérez, M.L., Díaz-Cedillo, F., Contreras-Rodríguez, A., Betanzos-Cabrera, G., Peralta, H., Rodríguez-Martínez, S., Jan-Roblero, J. and Diaz, J.C.C. (2015). "Different Sensitivity Levels To Norspermidine on Biofilm Formation in Clinical and Commensal Staphylococcus Epidermidis Strains". Microbial Pathogenesis. 79:8-16   PUBMED: #25549879
31 2014 Althabegoiti, M.J., Ormeño-Orrillo, E., Lozano, L., Tejerizo, G.T., Rogel, M.A., Mora, J. and Martínez-Romero, E. (2014). "Characterization Of Rhizobium Grahamii Extrachromosomal Replicons And Their Transfer Among Rhizobia". BMC Microbiol. 14:6   PUBMED: #24397311
32 2014 Andrade-Domínguez, A., Salazar, E., Vargas, M.C., Kolter, R. and Encarnación, S. (2014). "Eco-evolutionary Feedbacks Drive Species Interactions". Isme Journal. 8(5):1041-1054   PUBMED: #24304674
33 2014 Cocotl-Yañez, M., Moreno, S., Encarnación, S., López-Pliego, L., Castañeda, M. and Espín, G. (2014). "A Small Heat-shock Protein (Hsp20) Regulated by RpoS is Essential for Cyst Desiccation Resistance in Azotobacter Vinelandii". Microbiology-sgm. 160:479-487   PUBMED: #24385478
34 2014 de Luna-Valdez, L.A., Martínez-Batallar, Á.G., Hernández, M., Encarnación, S., Ramos-Vega, M., López-Bucio, J.S., León, P. and Guevara-Garcia, A.A. (2014). "Proteomic Analysis of Chloroplast Biogenesis (clb) Mutants Uncovers Novel Proteins Potentially Involved in the Development of Arabidopsis thaliana Chloroplasts". Journal of Proteomics. 111:148-164   PUBMED: #25154054
35 2014 Garcia-Garcia, J.D., Girard, L., Hernández, G., Saavedra, E., Pardo, J.P., Rodríguez-Zavala, J.S., Encalada, R., Reyes-Prieto, A., Mendoza-Cozatl, D.G. and Moreno-Sánchez, R. (2014). "Zn-bis-glutathionate Is the Best Co-substrate of the Monomeric Phytochelatin Synthase from the Photosynthetic Heavy Metal-hyperaccumulator Euglena Gracilis". Metallomics. 6(3):604-616   PUBMED: #24464102
36 2014 Garibay-Cerdenares, O.L., Hernández-Ramírez, V.I., Osorio-Trujillo, J.C., Hernández, M., Gallardo-Rincón, D., Cantú de León, D., Encarnación, S., Villegas-Pineda, J.C. and Talamas-Rohana, P. (2014). "Proteomic Identification of Fucosylated Haptoglobin Alpha Isoforms in Ascitic Fluids and Its Localization in Ovarian Carcinoma Tissues from Mexican Patients". J. Ovarian Res.. 7(1):27   PUBMED: #24576319
37 2014 Gutiérrez-Roman, M.I., Dunn, M.F., Tinoco-Valencia, R., Holguin-Melendez, F., Huerta-Palacios, G. and Guillen-Navarro, K. (2014). "Potentiation of The Synergistic Activities of Chitinases chiA, chiB and chiC from Serratia marcescens CFFSUR-B2 by Chitobiase (chb) and Chitin Binding Protein (CBP)". World J Microbiol Biotechnol. 30(1):33-42   PUBMED: #23824666
38 2014 Mora, Y., Díaz-Mendez, R., Vargas, M.C., Peralta, H., Guerrero, G., Aguilar, A., Encarnación, S., Girard, L. and Mora, J. (2014). "Nitrogen-fixing Rhizobial Strains Isolated from Common Bean Seeds: Phylogeny, Physiology, and Genome Analysis". Appl Environ Microbiol. 80(18):5644-5654   PUBMED: #25002426
39 2014 Pérez-Vázquez, V., Guzmán-Flores, J.M., Mares-Alvarez, D., Hernández, M., Macias-Cervantes, M.H., Ramírez-Emiliano, J. and Encarnación, S. (2014). "Differential Proteomic Analysis of the Pancreas of Diabetic DB/DB Mice Reveals the Proteins Involved in the Development of Complications of Diabetes Mellitus". International Journal of Molecular Sciences. 15(6):9579-9593   PUBMED: #24886809
40 2014 Rosas, T., Rosenblueth, M., Rincón-Rosales, R., Mora, J. and Martínez-Romero, E. (2014). "Genome Sequence Of Candidatus Walczuchella Monophlebidarum The Flavobacterial Endosymbiont Of Llaveia axin axin (Hemiptera: COCCOIDEA: Monophlebidae)". Genome Biol. Evol.. 6(3):714-726   PUBMED: #24610838
41 2014 Trejo-Hernández, A., Andrade-Domínguez, A., Hernández, M. and Encarnación, S. (2014). "Interspecies Competition Triggers Virulence And Mutability In Candida albicans-Pseudomonas Aeruginosa Mixed Biofilms". Isme Journal. 8(10):1974-1988   PUBMED: #24739628
42 2014 Villarreal, J.M., Becerra-Lobato, N., Rebollar-Flores, J.E., Medina-Aparicio, L., Carbajal-Gómez, E., Zavala-Garcia, M.L., Vázquez, A, Gutierrez-Ríos, R.M., Encarnación, S., Martínez-Batallar, Á.G., Calva, E. and Hernández-Lucas, I. (2014). "The Salmonella enterica Serovar Typhi ltrR-ompR-ompC-ompF Genes Are Involved in Resistance to the Bile Salt Sodium Deoxycholate and in Bacterial Transformation". Mol Microbiol. 92(5):1005-1024   PUBMED: #24720747
43 2013 Aparicio-Fabre, R., Guillén, G., Loredo, M., Arellano, J., Valdés-López, O., Ramirez, M., Iñiguez-Rabago, L.P., Panzeri, D., Castiglioni, B., Cremonesi, P., Strozzi, F., Stella, A., Girard, L., Sparvoli, F. and Hernández, G. (2013). "Common Bean (Phaseolus vulgaris L.) Pvtify Orchestrates Global Changes in Transcript Profile Response to Jasmonate and Phosphorus Deficiency". Bmc Plant Biology. 13:26   PUBMED: #23402340
44 2013 Esparza-Garrido, R.R., Velazquez-Flores, M.A., Diegoperez-Ramírez, J., López-Aguilar, E., Siordia-Reyes, G., Hernández, M., Martínez-Batallar, Á.G., Encarnación, S., Salamanca-Gomez, F. and Arenas-Aranda, D.J. (2013). "A Proteomic Approach of Pediatric Astrocytomas: MiRNAs and Network Insight". Journal of Proteomics. 94:162-175   PUBMED: #24060999
45 2013 Higareda-Almaraz, J.C., Valtierra-Gutiérrez, I.A., Hernández, M., Contreras-Martínez, S., Hernádez, E. and Encarnación, S. (2013). "Analysis and Prediction of Pathways in Hela Cells by Integrating Biological Levels of Organization with Systems-biology Approaches". Plos One. 8(6)   PUBMED: #23785426
46 2013 Martínez-Aguilar, L., Salazar-Salazar, C., Díaz-Mendez, R., Caballero-Mellado, J., Hirsch, A.M., Vasquez-Murrieta, M.S. and Estrada-de los Santos, P. (2013). "Burkholderia Caballeronis sp nov., A Nitrogen Fixing Species Isolated From Tomato (Lycopersicon esculentum) With The Ability To Effectively Nodulate Phaseolus vulgaris". Anton Leeuwenhoek Int J Gen M. 104(6):1063-1071   PUBMED: #24057982
47 2013 Ramirez, M., Guillén, G., Fuentes, S.I., Iñiguez-Rabago, L.P., Aparicio-Fabre, R., Zamorano-Sánchez, D., Encarnación, S., Panzeri, D., Castiglioni, B., Cremonesi, P., Strozzi, F., Stella, A., Girard, L., Sparvoli, F. and Hernández, G. (2013). "Transcript Profiling of Common Bean Nodules Subjected to Oxidative Stress". Physiol Plant. 149(3):389-407   PUBMED: #23432573
48 2013 Ramirez, M., Flores-Pacheco, G., Reyes, J.L., Álvarez, A.L., Drevon, J.J., Girard, L. and Hernández, G. (2013). "Two Common Bean Genotypes With Contrasting Response To Phosphorus Deficiency Show Variations In the microRNA 399-mediated PvPHO2 Regulation within the PvPHR1 Signaling Pathway". International Journal of Molecular Sciences. 14(4):8328-8344   PUBMED: #23591845
49 2013 Rodríguez-Cruz, M., Coral-Vázquez, R.M., Hernández-Stengele, G., Sánchez, R., Salazar, E., Sánchez-Muñoz, F., Encarnación, S. and Ramirez-Salcedo, J. (2013). "Identification of Putative Ortholog Gene Blocks Involved in Gestant and Lactating Mammary Gland Development: a Rodent Cross- Species Microarray Transcriptomics Approach". International Journal of Genomics.   PUBMED: #24288657
50 2012 Ávila-Calderón, E.D., López-Merino, A.E., Jain, N., Peralta, H., López-Villegas, E.O., Sriranganathan, N., Boyle, S.M., Witonsky, S. and Contreras-RodrÍguez, A. (2012). "Characterization Of Outer Membrane Vesicles from Brucella Melitensis and Protection Induced in Mice". Clin Dev Immunol.   PUBMED: #22242036
51 2012 Cancino-Rodezno, A., Lozano, L., Oppert, C., Castro, J.I., Lanz-Mendoza, H., Encarnación, S., Evans, A.E., Gill, S.S., Soberon, M., Jurat-Fuentes, J.L. and Bravo, A. (2012). "Comparative Proteomic Analysis Of Aedes Aegypti Larval Midgut After Intoxication With Cry11Aa Toxin from Bacillus thuringiensis". Plos One. 7(5):e37034   PUBMED: #22615881
52 2012 Chino-Flores, C., Dantan-González, E., Vázquez-Ramos, A., Tinoco-Valencia, R., Díaz-Mendez, R., Sánchez-Salinas, E., Castrejón-Godinez, M.L., Ramos-Quintana, F. and Ortíz-Hernandez, M.L. (2012). "Isolation of the opdE Gene that Encodes for a New Hydrolase of Enterobacter sp Capable of Degrading Organophosphorus Pesticides". Biodegradation. 23(3):387-397   PUBMED: #22065283
53 2012 García-García, J.D., Olin-Sandoval, V., Saavedra, E., Girard, L., Hernández, G. and Moreno-Sánchez, R. (2012). "Sulfate Uptake In Photosynthetic Euglena Gracilis. Mechanisms of Regulation and Contribution to Cysteine Homeostasis". Bba-gen Subjects. 1820(10):1567-1575   PUBMED: #22609877
54 2012 Gutiérrez-Roman, M.I., Holguin-Melendez, F., Bello-Mendoza, R., Guillén-Navarro, K., Dunn, M.F. and Huerta-Palacios, G. (2012). "Production Of Prodigiosin and Chitinases by Tropical Serratia marcescens Strains with Potential to Control Plant Pathogens". World J Microbiol Biotechnol. 28(1):145-153   PUBMED: #22806790
55 2012 Juárez-Verdayes, M.A., González-Uribe, P.M., Peralta, H., Rodríguez-Martínez, S., Jan-Roblero, J., Escamilla-Hernández, R., Cancino-Díaz, M.E. and Cancino-Díaz, J.C. (2012). "Detection Of hssS, hssR, hrtA and hrtB Genes and their Expression by Hemin in Staphylococcus Epidermidis". Can J Microbiol. 58(9):1063-1072   PUBMED: #22906238
56 2012 Martínez-Gómez, K., Flores, N., Castañeda, H.M., Martínez-Batallar, Á.G., Hernández-Chávez, G., Ramírez, O.T., Gosset, G., Encarnación, S. and Bolivar, F. (2012). "New Insights Into Escherichia coli Metabolism: Carbon Scavenging, Acetate Metabolism And Carbon Recycling Responses during Growth on Glycerol". Microb Cell Fact. 11:46   PUBMED: #22513097
57 2012 Resendis-Antonio, O., Hernández, M., Mora, Y. and Encarnación, S. (2012). "Functional Modules, Structural Topology, and Optimal Activity in Metabolic Networks". Plos Comput Biol. 8(10):e1002720   PUBMED: #23071431
58 2012 Sánchez, D.G., Otero, L.H., Hernández, M., Serra, A.L., Encarnación, S., Domenech, C.E. and Lisa, A.T. (2012). "A Pseudomonas Aeruginosa PA01 Acetylcholinesterase is Encoded by the PA4921 Gene and Belongs to the SGNH Hydrolase Family". Microbiological Research. 167(6):317-325   PUBMED: #22192836
59 2012 Talbi, C., Sánchez, C., Hidalgo-García, A., González, E.M., Arrese-Igor, C., Girard, L., Bedmar, E.J. and Delgado, M.J. (2012). "Enhanced Expression of Rhizobium etli cbb3 Oxidase Improves Drought Tolerance of Common Bean Symbiotic Nitrogen Fixation". J Exp Bot. 63(14):5053-5043   PUBMED: #22511804
60 2012 Zamorano-Sánchez, D., Reyes-González, A., Gómez-Hernández, N., Rivera, P., Georgellis, D. and Girard, L. (2012). "FxkR Provides the Missing Link in the fixL-fixK Signal Transduction Cascade in Rhizobium etli CFN42". Mol Plant Microbe Interactions. 25(11):1506-1517   PUBMED: #22809273
61 2011 Cervantes, L., Bustos, P., Girard, L., Santamaria, R.I., Dávila, G., Vinuesa, P., Romero, D. and Brom, S. (2011). "The Conjugative Plasmid of a Bean-nodulating Sinorhizobium fredii Strain is Assembled from Sequences of Two Rhizobium Plasmids and the Chromosome of a Sinorhizobium Strain". BMC Microbiol. 11(1):149   PUBMED: #21702991
62 2011 Díaz-Mendez, R., Vargas, M.C., Villalobos-López, M.A., Peralta, H., Mora, Y., Encarnación, S., Girard, L. and Mora, J. (2011). "Argc Orthologs From Rhizobiales Show Diverse Profiles of Transcriptional Efficiency and Functionality in Sinorhizobium meliloti". J Bacteriol. 193(2):460-472   PUBMED: #21075924
63 2011 Dunn, M.F. (2011). "Anaplerotic Function Of Phosphoenolpyruvate Carboxylase In Bradyrhizobium japonicum USDA110". Curr Microbiol. 62(5):1782-1788   PUBMED: #21479798
64 2011 Gómez-Hernández, N., Reyes-González, A., Sanchez, C., Mora, Y., Delgado, M.J. and Girard, L. (2011). "Regulation and Symbiotic Role of nirK and norC Expression in Rhizobium etli". Mol Plant Microbe Interactions. 24(2):233-245   PUBMED: #21043576
65 2011 Higareda-Almaraz, J.C., Enríquez, M.R., Hernández, M., Resendis-Antonio, O. and Encarnación, S. (2011). "Proteomic Patterns of Cervical Cancer Cell Lines, a Network Perspective". Bmc Syst Biol. 5   PUBMED: #21696634
66 2011 Peralta, H., Guerrero, G., Aguilar, A. and Mora, J. (2011). "Sequence Variability of Rhizobiales Orthologs and Relationship with Physico-chemical Characteristics of Proteins". Biol Direct. 6   PUBMED: #21970442
67 2011 Resendis-Antonio, O., Hernández, M., Salazar, E., Contreras-Martínez, S., Martínez-Batallar, Á.G., Mora, Y. and Encarnación, S. (2011). "Systems Biology of Bacterial Nitrogen Fixation: High-throughput Technology and Its Integrative Description with Constraint-based Modeling". Bmc Syst Biol. 5   PUBMED: #21801415
68 2010 Dávila-Martínez, Y., Ramos-Vega, A.L., Contreras-Martínez, S., Encarnación, S., Geiger, O. and López-Lara, I.M. (2010). "Smc01553 Is The Sixth Acyl Carrier Protein in Sinorhizobium meliloti 1021". Microbiology-sgm. 156:230-239   PUBMED: #19797355
69 2010 González, V., Acosta, J.L., Santamaria, R.I., Bustos, P., Fernández, J.L., Hernández-González, I., Díaz-Mendez, R., Flores, M., Palacios, R., Mora, J. and Dávila, G. (2010). "Conserved Symbiotic Plasmid Dna Sequences in the Multireplicon Pangenomic Structure of Rhizobium etli". Appl Environ Microbiol. 76(5):1604-1614   PUBMED: #20048063
70 2010 Meneses, N., Mendonza-Hernández, G. and Encarnación, S. (2010). "The Extracellular Proteome of Rhizobium etli CE3 in Exponential and Stationary Growth Phase". Proteome Sci. 8:51   PUBMED: #20942974
71 2010 Resendis-Antonio, O., Checa, A. and Encarnación, S. (2010). "Modeling Core Metabolism in Cancer Cells: Surveying the Topology Underlying the Warburg Effect". Plos One. 5(8)   PUBMED: #20811631
72 2010 Salazar, E., Díaz-Mejía, J.J., Moreno-Hagelsieb, G., Martínez-Batallar, Á.G., Mora, Y., Mora, J. and Encarnación, S. (2010). "Characterization Of The NifA-RpoN Regulon in Rhizobium etli in Free Life and in Symbiosis with Phaseolus vulgaris". Appl Environ Microbiol. 76(13):4510-4520   PUBMED: #20453139
73 2010 Sánchez, C., Gates, A.J., Meakin, G.E., Uchiumi, T., Girard, L., Richardson, D.J., Bedmar, E.J. and Delgado, M.J. (2010). "Production of Nitric Oxide and Nitrosylleghemoglobin Complexes in Soybean Nodules in Response to Flooding". Mol Plant Microbe Interactions. 23(5):702-711   PUBMED: #20367476
74 2010 Talbi, C., Delgado, M.J., Girard, L., Ramírez-Trujillo, J.A., Caballero-Mellado, J. and Bedmar, E.J. (2010). "Burkholderia Phymatum Strains Capable Of Nodulating Phaseolus vulgaris Are Present In Moroccan Soils". Appl Environ Microbiol. 76(13):4587-4591   PUBMED: #20472732
75 2009 Balleza, E., López-Bojorquez, L., Martínez-Antonio, A., Resendis-Antonio, O., Lozada-Chávez, I., Balderas-Martinez, Y.I., Encarnación, S. and Collado-Vides, J. (2009). "Regulation By Transcription Factors in Bacteria: beyond Description". FEMS Microbiol Rev. 33(1):133-151   PUBMED: #19076632
76 2009 Dunn, M.F., Ramírez-Trujillo, J.A. and Hernández-Lucas, I. (2009). "Major Roles of Isocitrate Lyase and Malate Synthase in Bacterial and Fungal Pathogenesis". Microbiology-sgm. 155:3166-3175   PUBMED: #19684068
77 2009 Martínez-Salazar, J.M., Sandoval-Calderón, M., Guo, X.W., Castillo-Ramírez, S., Reyes-González, A., Loza-Correa, M., Rivera, J., Alvarado-Affantranger, X., Sánchez, F, González, V., Dávila, G. and Ramírez-Romero, M.Á. (2009). "The Rhizobium etli RpoH1 and RpoH2 Sigma Factors are Involved in Different Stress Responses". Microbiology-sgm. 155:386-397   PUBMED: #19202087
78 2009 Martínez-Salazar, J.M., Salazar, E., Encarnación, S., Ramírez-Romero, M.Á. and Rivera, J. (2009). "Role Of the Extracytoplasmic Function Sigma Factor RpoE4 in Oxidative and Osmotic Stress Responses in Rhizobium etli". J Bacteriol. 191(13):4122-4132   PUBMED: #19376852
79 2009 Onofre-Lemus, J., Hernández-Lucas, I., Girard, L. and Caballero-Mellado, J. (2009). "Acc (1-aminocyclopropane-1-carboxylate) Deaminase Activity, a Widespread Trait in Burkholderia Species, and Its Growth-promoting Effect on Tomato Plants". Appl Environ Microbiol. 75(20):6581-6590   PUBMED: #19700546
80 2009 Ramos-Vega, A.L., Dávila-Martínez, Y., Sohlenkamp, C., Contreras-Martínez, S., Encarnación, S., Geiger, O. and López-Lara, I.M. (2009). "SMb20651 Is Another Acyl Carrier Protein from Sinorhizobium meliloti". Microbiology. 155:257-267   PUBMED: #19118366
81 2009 Resendis-Antonio, O. (2009). "Filling Kinetic Gaps: Dynamic Modeling of Metabolism where Detailed Kinetic Information is Lacking". Plos One. 4(3):e4967   PUBMED: #19305506
82 2009 Rodríguez-Alvarez, M., Mendoza-Hernández, G., Encarnación, S., Calva, J.J. and López-Vidal, Y. (2009). "Phenotypic Differences between Bcg Vaccines at the Proteome Level". Tuberculosis. 89(2):126-135   PUBMED: #19231290
83 2008 Contreras-Rodriguez, A, Quiroz-Limon, J, Martins, AM, Peralta, H., Avila-Calderon, E, Sriranganathan, N, Boyle, SM and Lopez-Merino, A (2008). "Enzymatic, Immunological And Phylogenetic Characterization of Brucella suis Urease". BMC Microbiol. 8:121   PUBMED: #18638408
84 2008 Hernández-Lucas, I., Gallego-Hernandez, A.L., Encarnación, S., Fernandez-Mora, M., Martínez-Batallar, Á.G., Salgado, H., Oropeza, R. and Calva, E. (2008). "The LysR-type Transcriptional Regulator Leuo Controls Expression of Several Genes in Salmonella enterica Serovar Typhi". J Bacteriol. 190(5):1658-1670   PUBMED: #18156266
85 2008 Martínez-Aguilar, L., Díaz-Mendez, R., Pena-Cabriales, J.J., Estrada-de los Santos, P., Dunn, M.F. and Caballero-Mellado, J. (2008). "Multichromosomal Genome Structure And Confirmation of Diazotrophy in Novel Plant-associated Burkholderia Species". Appl Environ Microbiol. 74(14):4574-4579   PUBMED: #18502926
86 2008 Rodriguez-Perez, MA, Medina-Aunon, A, Encarnación, S., Bernal-Silvia, S, Barrera-Saldana, H and Albar-Ramirez, JP (2008). "In Silico Analysis of Protein Neoplastic Biomarkers for Cervix and Uterine Cancer". Clin Transl Oncol. 10(10):604-617   PUBMED: #18940741
87 2008 Taboada, H., Encarnación, S., Vargas, M.C., Mora, Y., Miranda-Ríos, J., Soberón, M. and Mora, J. (2008). "Thiamine Limitation Determines The Transition from Aerobic to Fermentative-like Metabolism in Rhizobium etli CE3". FEMS Microbiol Lett. 279(1):48-55   PUBMED: #18177306
88 2008 Valdés-López, O., Arenas-Huertero, C., Ramirez, M., Girard, L., Sánchez, F., Vance, C.P., Reyes, J.L. and Hernández, G. (2008). "Essential Role Of Myb Transcription Factor: PvPHR1 And microRNA: PvmiR399 in Phosphorus-deficiency Signalling in Common Bean Roots". Plant Cell Environ. 31(12):1834-1843   PUBMED: #18771575
89 2007 Flores, M., Morales, L., Gonzaga-Jáuregui, C., Domínguez-Vidaña, R., Zepeda-Mendoza, C.J., Yáñez, O., Gutierrez-Arcelus, M., Lemus, T., Valle-García, D., Ávila, M.C., Blanco, D., Medina-Ruiz, S., Meza-Sosa, K.F., Ayala, E., García-Alonso, D., Bustos, P., González, V., Girard, L., Tusie-Luna, T., Dávila, G. and Palacios, R. (2007). "Recurrent DNA Inversion Rearrangements in the Human Genome". P Nat Acad Sci USA. 104(15):6099-6106   PUBMED: #17389356
90 2007 Granados-Baeza, M.J., Gómez-Hernández, N., Mora, Y., Delgado, M.J., Romero, D. and Girard, L. (2007). "Novel Reiterated Fnr-type Proteins Control the Production of the Symbiotic Terminal Oxidase Cbb(3) in Rhizobium etli CFN42". Mol Plant Microbe Interactions. 20(10):1241-1249   PUBMED: #17918626
91 2007 Ramírez-Trujillo, J.A., Encarnación, S., Salazar, E., García-de los Santos, A., Dunn, M.F., Emerich, D.W., Calva, E. and Hernández-Lucas, I. (2007). "Functional Characterization Of The Sinorhizobium meliloti Acetate Metabolism Genes aceA, SMc00767, and glcB". J Bacteriol. 189(16):5875-5884   PUBMED: #17526694
92 2007 Resendis-Antonio, O., Reed, J.L., Encarnación, S., Collado-Vides, J. and Palsson, B.O. (2007). "Metabolic Reconstruction And Modeling of Nitrogen Fixation in Rhizobium etli". Plos Comput Biol. 3(10):1887-1895   PUBMED: #17922569
93 2007 Velázquez-Arellano, A. and Encarnación, S. (2007). "Role of Proteomics in the Study of Nutrition". Journal of Nutrigenetics and Nutrigenomics. 1:55-58    
94 2006 Batista, C.V.F., DSuze, G., Gómez-Lagunas, F., Zamudio, F.Z., Encarnación, S., Sevcik, C. and Possani, L.D. (2006). "Proteomic Analysis of Tityus discrepans Scorpion Venom and Amino Acid Sequence of Novel Toxins". Proteomics. 6(12):3718-3727   PUBMED: #16705749
95 2006 Encarnación, S. (2006). "GenÓmica y GenÓmica Funcional en MicrobiologÍa". Revista Latinoamericana de Microbiología. 48(2):131-132    
96 2006 Encarnación, S., Salazar, E., Martínez-Batallar, Á.G., Hernández, M., Reyes-Pérez, A., Contreras-Martínez, S., Vargas, M.C., Domínguez-Vidaña, R., Gonzaga-Jáuregui, C., Mora, Y., Rivero Zaragoza, R. and Mora, J. (2006). "GenÓmica Funcional en Rizobiaceas". Revista Latinoamericana de Microbiología. 48(2):135-141    
97 2005 Bueno, E., Gómez-Hernández, N., Girard, L., Bedmar, E.J. and Delgado, M.J. (2005). "Function Of the Rhizobium etli CFN42 nirK Gene in Nitrite Metabolism". Biochem Soc Trans. 33:162-163   PUBMED: #15667294
98 2005 Encarnación, S., Hernández, M., Martínez-Batallar, Á.G., Contreras-Martínez, S., Vargas, M.C. and Mora, J. (2005). "Comparative Proteomics Using 2-D Gel Electrophoresis and Mass Spectrometry as Tools to Dissect Stimulons and Regulons in Bacteria with Sequenced or Partially Sequenced Genomes". Biol Proced Online. 117-135   PUBMED: #16145578
99 2005 Flores, M., Morales, L., Ávila, A., González, V., Bustos, P., García-Alonso, D., Mora, Y., Guo, X.W., Collado-Vides, J., Pinero, D., Dávila, G., Mora, J. and Palacios, R. (2005). "Diversification of DNA Sequences in the Symbiotic Genome of Rhizobium etli". J Bacteriol. 187(21):7185-7192   PUBMED: #16237002
100 2005 Guerrero, G., Peralta, H., Aguilar, A., Díaz-Mendez, R., Villalobos-López, M.A., Medrano-Soto, A. and Mora, J. (2005). "Evolutionary, Structural And Functional Relationships Revealed by Comparative Analysis of Syntenic Genes in Rhizobiales". BMC Evol Biol. 5:55   PUBMED: #16229745
101 2005 Guillén-Navarro, K., Araíza, G., García-de los Santos, A., Mora, Y. and Dunn, M.F. (2005). "The Rhizobium etli bioMNY Operon Is Involved in Biotin Transport". FEMS Microbiol Lett. 250(2):209-219   PUBMED: #16099603
102 2005 Guillén-Navarro, K., Encarnación, S. and Dunn, M.F. (2005). "Biotin Biosynthesis, Transport And Utilization in Rhizobia". FEMS Microbiol Lett. 246(2):159-165   PUBMED: #15899401
103 2004 Batista, C.V.F., Del Pozo, L., Zamudio, F.Z., Contreras-Martínez, S., Becerril, B., Wanke, E. and Possani, L.D. (2004). "Proteomics of the Venom from the Amazonian Scorpion Tityus Cambridgei and the Role of Prolines on Mass Spectrometry Analysis of Toxins". J Chromatogr B. 803(1):55-66   PUBMED: #15025998
104 2004 Brom, S., Girard, L., Tun-Garrido, C., García-de los Santos, A., Bustos, P., González, V. and Romero, D. (2004). "Transfer of The Symbiotic Plasmid of Rhizobium etli CFN42 Requires Cointegration with p42a, Which may be Mediated by Site-Specific Recombination". J Bacteriol. 186(22):7538-7548   PUBMED: #15516565
105 2004 Dunn, M.F., Araíza, G. and Mora, J. (2004). "Biochemical Characterization Of a Rhizobium etli Monovalent Cation-stimulated Acyl-coenzyme a Carboxylase with a High Substrate Specificity Constant for Propionyl-coenzyme a". Microbiology-sgm. 150:399-406   PUBMED: #14766918
106 2004 Peralta, H., Mora, Y., Salazar, E., Encarnación, S., Palacios, R. and Mora, J. (2004). "Engineering The Nifh Promoter Region and Abolishing Poly-beta-hydroxybutyrate Accumulation in Rhizobium etli Enhance Nitrogen Fixation in Symbiosis with Phaseolus vulgaris". Appl Environ Microbiol. 70(6):3272-3281   PUBMED: #15184121
107 2004 Perez-Mendoza, D., Dominguez-Ferreras, A., Munoz, S., Soto, M.J., Olivares, J., Brom, S., Girard, L., Herrera-Cervera, J.A. and Sanjuan, J. (2004). "Identification of Functional Mob Regions in Rhizobium etli: Evidence for Self-transmissibility of the Symbiotic Plasmid pRetCFN42d". J Bacteriol. 186(17):5753-5761   PUBMED: #15317780
108 2003 Encarnación, S., Guzmán, Y., Dunn, M.F., Hernández, M., Vargas, M.C. and Mora, J. (2003). "Proteome Analysis Of Aerobic and Fermentative Metabolism in Rhizobium etli CE3". Proteomics. 3(6):1077-1085   PUBMED: #12833533
109 2003 González, V., Bustos, P., Ramírez-Romero, M.Á., Medrano-Soto, A., Salgado, H., Hernández-González, I., Hernandez-Celis, J.C., Quintero, V., Moreno-Hagelsieb, G., Girard, L., Rodríguez, O., Flores, M., Cevallos, M.A., Collado-Vides, J., Romero, D. and Dávila, G. (2003). "The Mosaic Structure of the Symbiotic Plasmid of Rhizobium etli CFN42 and Its Relation to other Symbiotic Genome Compartments". Genome Biol. 4(6)   PUBMED: #12801410
110 2003 Medina, G., Juarez, K., Díaz-Mendez, R. and Soberón-Chávez, G. (2003). "Transcriptional Regulation Of Pseudomonas Aeruginosa rhlR, Encoding a Quorum-sensing Regulatory Protein". Microbiology-sgm. 149:3073-3081   PUBMED: #14600219
111 2003 Vargas, M.C., Encarnación, S., Dávalos, A., Reyes-Pérez, A., Mora, Y., García-de los Santos, A., Brom, S. and Mora, J. (2003). "Only One Catalase, katG, is Detectable in Rhizobium etli, and is Encoded along with the Regulator OxyR on a Plasmid Replicon". Microbiology-sgm. 149:1165-1176   PUBMED: #12724378
112 2002 Brom, S., Girard, L., García-de los Santos, A., Sanjuan-Pinilla, J.M., Olivares, J. and Sanjuan, J. (2002). "Conservation Of Plasmid-encoded Traits Among Bean-nodulating Rhizobium Species". Appl Environ Microbiol. 68(5):2555-2561   PUBMED: #11976134
113 2002 Dunn, M.F., Araíza, G., Encarnación, S., Vargas, M.C. and Mora, J. (2002). "Effect Of aniA (carbon Flux Regulator) and phaC (poly-beta-hydroxybutyrate Synthase) Mutations on Pyruvate Metabolism in Rhizobium etli". J Bacteriol. 184(8):2296-2299   PUBMED: #11914362
114 2002 Encarnación, S., Vargas, M.C., Dunn, M.F., Dávalos, A., Mendoza, G., Mora, Y. and Mora, J. (2002). "Ania Regulates Reserve Polymer Accumulation and Global Protein Expression in Rhizobium etli". J Bacteriol. 184(8):2287-2295   PUBMED: #11914361
115 2001 Dunn, M.F., Araíza, G. and Finan, T.M. (2001). "Cloning And Characterization of the Pyruvate Carboxylase from Sinorhizobium meliloti Rm1021". Arch Microbiol. 176(5):355-363   PUBMED: #11702077
116 2001 López, O., Morera, C., Miranda-Ríos, J., Girard, L., Romero, D. and Soberón, M. (2001). "Regulation of Gene Expression in Response to Oxygen in Rhizobium etli: Role of FnrN in fixNOQP Expression and in Symbiotic Nitrogen Fixation". J Bacteriol. 183(24):6999-7006   PUBMED: #11717256
117 2000 Castillo, A., Taboada, H., Mendoza, A., Valderrama, B., Encarnación, S. and Mora, J. (2000). "Role Of GOGAT in Carbon and Nitrogen Partitioning in Rhizobium etli". Microbiology-uk. 146:1627-1637   PUBMED: #10878127
118 2000 Girard, L., Brom, S., Dávalos, A., López, O., Soberón, M. and Romero, D. (2000). "Differential Regulation Of fixN-reiterated Genes in Rhizobium etli by a Novel fixL-fixK-cascade". Mol Plant Microbe Interactions. 13(12):1283-1292   PUBMED: #11106020
119 2000 Reyes, J.D., Tabche, M.L., Morera, C., Girard, L., Romero, D., Krol, E., Miranda, J. and Soberón, M. (2000). "Expression Pattern Of Rhizobium etli ccmIEFH Genes Involved In c-type Cytochrome Maturation". Gene. 250(1-2):149-157   PUBMED: #10854788
120 1999 Ramirez, M., Valderrama, B., Arredondo-Peter, R., Soberón, M., Mora, J. and Hernández, G. (1999). "Rhizobium etli Genetically Engineered For The Heterologous Expression of Vitreoscilla sp. Hemoglobin: Effects on Free-living and Symbiosis". Mol Plant Microbe Interactions. 12(11):1008-1015    
121 1999 Soberón, M., López, O., Morera, C., Girard, L., Tabche, M.L. and Miranda, J. (1999). "Enhanced Nitrogen Fixation In A Rhizobium etli Ntrc Mutant that Overproduces the Bradyrhizobium japonicum Symbiotic Terminal Oxidase Cbb(3)". Appl Environ Microbiol. 65(5):2015-2019   PUBMED: #10223993
122 1998 Dunn, M.F. (1998). "Tricarboxylic Acid Cycle And Anaplerotic Enzymes in Rhizobia". FEMS Microbiol Rev. 22(2):105-123   PUBMED: #9729766
123 1998 Encarnación, S., Calderón, J., Gelbard, A.S., Cooper, A.J.L. and Mora, J. (1998). "Glutamine Biosynthesis and The Utilization of Succinate and Glutamine by Rhizobium etli and Sinorhizobium meliloti". Microbiology-uk. 144:2629-2638   PUBMED: #9782512
124 1998 Flores, M., Mavingui, P., Girard, L., Perret, X., Broughton, W.J., Martínez-Romero, E., Dávila, G. and Palacios, R. (1998). "Three Replicons Of Rhizobium Sp. Strain NGR234 Harbor Symbiotic Gene Sequences". J Bacteriol. 180(22):6052-6053   PUBMED: #9811668
125 1998 Mandon, K., Michel-Reydellet, N., Encarnación, S., Kaminski, P.A., Leija, A., Cevallos, M.A., Elmerich, C. and Mora, J. (1998). "Poly-beta-hydroxybutyrate Turnover In Azorhizobium caulinodans is Required for Growth and Affects nifA Expression". J Bacteriol. 180(19):5070-5076   PUBMED: #9748438
126 1998 Mendoza, A., Valderrama, B., Leija, A. and Mora, J. (1998). "Nifa-dependent Expression Of Glutamate Dehydrogenase in Rhizobium etli Modifies Nitrogen Partitioning during Symbiosis". Mol Plant Microbe Interactions. 11(2):83-90   PUBMED: #9450332
127 1997 Dunn, M.F., Araíza, G., Cevallos, M.A. and Mora, J. (1997). "Regulation Of Pyruvate Carboxylase in Rhizobium etli". FEMS Microbiol Lett. 157(2):301-306   PUBMED: #9435112
128 1997 Miranda-Ríos, J., Morera, C., Taboada, H., Dávalos, A., Encarnación, S., Mora, J. and Soberón, M. (1997). "Expression of Thiamin Biosynthetic Genes (thiCOGE) And Production of Symbiotic Terminal Oxidase Cbb(3), in Rhizobium etli". J Bacteriol. 179(22):6887-6893   PUBMED: #9371431
129 1997 Ramírez-Romero, M.Á., Bustos, P., Girard, L., Rodríguez, O., Cevallos, M.A. and Dávila, G. (1997). "Sequence, Localization And Characteristics of the Replicator Region of the Symbiotic Plasmid of Rhizobium etli". Microbiology-uk. 143:2825-2831   PUBMED: #9274036
130 1996 Cevallos, M.A., Encarnación, S., Leija, A., Mora, Y. and Mora, J. (1996). "Genetic And Physiological Characterization of a Rhizobium etli Mutant Strain Unable to Synthesize Poly-beta-hydroxybutyrate". J Bacteriol. 178(6):1646-1654   PUBMED: #8626293
131 1996 Dunn, M.F., Encarnación, S., Araíza, G., Vargas, M.C., Dávalos, A., Peralta, H., Mora, Y. and Mora, J. (1996). "Pyruvate Carboxylase From Rhizobium etli: Mutant Characterization, Nucleotide Sequence, and Physiological Role". J Bacteriol. 178(20):5960-5970   PUBMED: #8830693
132 1996 Girard, L., Valderrama, B., Palacios, R., Romero, D. and Dávila, G. (1996). "Transcriptional Activity of the Symbiotic Plasmid of Rhizobium etli is Affected by Different Environmental Conditions". Microbiology-uk. 142:2847-2856    
133 1996 Taboada, H., Encarnación, S., Vargas, M.C., Mora, Y., Martínez-Romero, E. and Mora, J. (1996). "Glutamine Synthetase Ii Constitutes A Novel Taxonomic Marker in Rhizobium etli and other Rhizobium Species". Int J Syst Bact. 46(2):485-491    
134 1996 Valderrama, B., Dávalos, A., Girard, L., Morett, E. and Mora, J. (1996). "Regulatory Proteins And CIS-acting Elements Involved in the Transcriptional Control of Rhizobium etli Reiterated nifH Genes". J Bacteriol. 178(11):3119-3126   PUBMED: #8655489
135 1995 Encarnación, S., Dunn, M.F., Willms, K. and Mora, J. (1995). "Fermentative And Aerobic Metabolism in Rhizobium etli". J Bacteriol. 177(11):3058-3066   PUBMED: #7768801
136 1995 Mendoza, A., Leija, A., Martínez-Romero, E., Hernández, G. and Mora, J. (1995). "The Enhancement of Ammonium Assimilation in Rhizobium etli Prevents Nodulation of Phaseolus vulgaris". Mol Plant Microbe Interactions. 8(4):584-592   PUBMED: #8589413
137 1995 Romero, D., Martínez-Salazar, J.M., Girard, L., Brom, S., Dávila, G., Palacios, R., Flores, M. and Rodríguez, C. (1995). "Discrete Amplifiable Regions (Amplicons) In The Symbiotic Plasmid of Rhizobium etli CFN42". J Bacteriol. 177(4):973-980   PUBMED: #7860608
138 1993 Flores, M., Brom, S., Stepkowsky, T., Girard, L., Dávila, G., Romero, D. and Palacios, R. (1993). "Gene Amplification In Rhizobium Identification And in vivo Cloning Of Discrete Amplifiable Dna Regions (Amplicons) From Rhizobium leguminosarum Biovar phaseoli". P Nat Acad Sci USA. 90(11):4932-4936   PUBMED: #8506337
139 1991 Brom, S., García-de los Santos, A., Girard, L., Dávila, G., Palacios, R. and Romero, D. (1991). "High-frequency Rearrangements In Rhizobium leguminosarum Bv. phaseoli Plasmids". J Bacteriol. 173(3):1344-1346   PUBMED: #1991727
140 1991 Girard, L., Flores, M., Brom, S., Romero, D., Palacios, R. and Dávila, G. (1991). "Structural Complexity Of The Symbiotic Plasmid Of Rhizobium leguminosarum bv phaseoli". J Bacteriol. 173(8):2411-2419   PUBMED: #2013564
141 1991 Martínez-Salazar, J.M., Romero, D., Girard, L. and Dávila, G. (1991). "Molecular Cloning and Characterization of the recA Gene of Rhizobium phaseoli and Construction of recA Mutants". J Bacteriol. 173(10):3035-3040   PUBMED: #2022610
142 1991 Romero, D., Brom, S., Martínez-Salazar, J.M., Girard, L., Palacios, R. and Dávila, G. (1991). "Amplification And Deletion of A nod-nif Region in the Symbiotic Plasmid of Rhizobium phaseoli". J Bacteriol. 173(8):2435-2441   PUBMED: #2013567
143 1990 Calderón, J., Martínez, L.M. and Mora, J. (1990). "Isolation And Characterization of a Neurospora crassa Mutant Altered in the Alpha-polypeptide of Glutamine Synthetase". J Bacteriol. 172(9):4996-5000   PUBMED: #1975579
144 1990 Mora, J. (1990). "Glutamine Metabolism And Cycling in Neurospora crassa". Microbiol Rev. 54(3):293-304   PUBMED: #2145504
145 1989 Calderón, J. and Mora, J. (1989). "Glutamine Assimilation Pathways In Neurospora crassa Growing on Glutamine as Sole Nitrogen and Carbon Source". J. Gen. Microbiol.. 135:2699-2707   PUBMED: #2576659
146 1989 Calderón, J., Cooper, A.J.L., Gelbard, A.S. and Mora, J. (1989). "N-13 Isotope Studies of Glutamine Assimilation Pathways in Neurospora crassa". J Bacteriol. 171(3):1772-1774   PUBMED: #2522094
147 1988 Bravo, A. and Mora, J. (1988). "Ammonium Assimilation In Rhizobium phaseoli By the Glutamine Synthetase-glutamate Synthase Pathway". J Bacteriol. 170(2):980-984   PUBMED: #2892829
148 1988 Bravo, A., Becerril, B. and Mora, J. (1988). "Introduction Of The Escherichia coli Gdha Gene into Rhizobium phaseoli: Effect on Nitrogen Fixation". J Bacteriol. 170(2):985-988   PUBMED: #2892830
149 1987 Lomnitz, A., Calderón, J., Hernández, G. and Mora, J. (1987). "Functional-analysis of Ammonium Assimilation Enzymes in Neurospora-crassa". J. Gen. Microbiol.. 133:2333-2340    
150 1987 Mora, Y., Hernández, G. and Mora, J. (1987). "Regulation Of Carbon and Nitrogen Flow by Glutamate Synthase in Neurospora crassa". J. Gen. Microbiol.. 133(7):1667-1674   PUBMED: #2959749
151 1986 Hernández, G. and Mora, J. (1986). "Glutamine Synthesis Regulates Sucrose Catabolism In Neurospora crassa". J. Gen. Microbiol.. 132:3315-3323    
152 1986 Hernández, G., Mora, Y. and Mora, J. (1986). "Regulation Of Glutamine Synthesis by Glycine and Serine in Neurospora crassa". J Bacteriol. 165(1):133-138   PUBMED: #2867084
153 1986 Leija, A., Ruíz-Herrera, J. and Mora, J. (1986). "Effect Of L-amino Acids on Mucor rouxii Dimorphism". J Bacteriol. 168(2):843-850   PUBMED: #3096961
154 1985 Calderón, J. and Mora, J. (1985). "Glutamine Cycling In Neurospora crassa". J. Gen. Microbiol.. 131(12):3237-3242    
155 1985 Calderón, J., Morett, E. and Mora, J. (1985). "Omega-amidase Pathway in the Degradation of Glutamine in Neurospora crassa". J Bacteriol. 161(2):807-809   PUBMED: #2857167
156 1985 Quinto, C., de la Vega, H., Flores, M., Leemans, J., Cevallos, M.A., Pardo, M.A., Azpiroz, R., Girard, L., Calva, E. and Palacios, R. (1985). "Nitrogenase Reductase: A Functional Multigene Family In Rhizobium phaseoli". P Nat Acad Sci USA. 82(4):1170-1174   PUBMED: #16593543
157 1983 Dávila, G., Brom, S., Mora, Y., Palacios, R. and Mora, J. (1983). "Genetic and Biochemical Characterization of Glutamine Synthetase from Neurospora crassa Glutamine Auxotrophs and their Revertants". J Bacteriol. 156(3):993-1000   PUBMED: #6139363
158 1983 González, A., Tenorio, M., Vaca, G. and Mora, J. (1983). "Neurospora crassa Mutant Impaired In Glutamine Regulation". J Bacteriol. 155(1):1-7   PUBMED: #6134713
159 1983 Hernández, G., Sánchez-Pescador, R., Palacios, R. and Mora, J. (1983). "Nitrogen Source Regulates Glutamate Dehydrogenase Nadp Synthesis in Neurospora crassa". J Bacteriol. 154(1):524-528   PUBMED: #6300039
160 1982 Lara-Flores, M., Blanco, L., Campomanes, M., Calva, E., Palacios, R. and Mora, J. (1982). "Physiology Of Ammonium Assimilation in Neurospora crassa". J Bacteriol. 150(1):105-112   PUBMED: #6120927
161 1980 Hummelt, G. and Mora, J. (1980). "Regulation And Function of Glutamate Synthase in Neurospora crassa". Biochem Biophys Res Commun. 96(4):1688-1694   PUBMED: #6449930

Programa de Genómica Funcional de Procariotes

Responsable del Programa: Jaime Mora-Celis, M. D. Ph. D.

Con genómica comparativa encontramos que en R.etli, S.meliloti, M.loti, A.tumefaciens y B.melitensis una alta proporción de sus genes cromosomales son sinténicos (conservan el orden) y en comparación con los no sinténicos muestran mayor organización en operones, restricción al cambio, esencialidad e interacción funcional. Los sinténicos muestran una proporción de residuos comunes y otra de propios (la firma de la especie). ¿Hay mayor interrelación evolutiva en los sinténicos?, ¿Cuál es el significado funcional de la firma de la especie? Para ello seguimos 2 líneas:

1) Analizamos los genes sinténicos y no sinténicos comunes en esos Rhizobiales por identidad, similitud y filogenia.
2) Mutagenizamos argC (sinténico esencial de la síntesis de arginina) en S.meliloti y lo sustituimos con el gene de los otros Rhizobiales para evaluar la influencia de las firmas en el ajuste enzimático, la restitución de la prototrofía y la formación de metabolones.

Además, en el Laboratorio de Proteómica se analizan el proteoma, fosfoproteoma y transcriptoma de R.etli y S.meliloti para determinar la expresión global del genoma en el metabolismo fermentativo y aeróbico, simbiosis, en condiciones de estrés y en desarrollo de biofilms, de una sola especie y en comunidad con eucariotes como S.cerevisiae. De igual forma, hemos iniciado proyectos de proteómica buscando factores específicos en cáncer cervicouterino, como biomarcadores en plasma de pacientes con esta patología, y cambios en el fosofoproteoma en líneas celulares de cáncer.


Los artículos que aparecen en esta sección, son una selección del Dr. Mora hecha a través de varios años y de diversas revistas. Cada artículo cuenta con el resumen (abstract) del mismo, así como una liga para obtener el documento en formato PDF.

En próximas fechas estará disponible una red interactiva de las palabras clave de cada uno de los artículos contenidos en el Repositorio. Se les mantendrá informados cuando esta herramienta se active.

El Repositorio se encuentra ubicado en la siguiente dirección:

Rhizogenómica. Portal del Programa de Genómica Funcional de Procariotes, que dirige el Dr. Jaime Mora. Además de presentar información sobre los proyectos de investigación, en especial está dedicado a herramientas computacionales para el análisis genómico. Contiene los programas perl utilizados para la genómica comparativa de Rhizobiales, artículos publicados recientemente y otras ligas de interés.

Improvement of nitrogen fixation capacity of Rhizobium

The biofertilizers have a great perspective of application in the agricultural fields in Mexico because they are environmentally friendly, have a low cost and they are easily transported and applied. On the other hand, the nitrogen chemical fertilization represents high economic costs for the farmers, but the most serious effects of the massive fertilization in the world are environmental: industrial production contaminates the air, soils are deteriorated by the salinity, as well as the water-bearing mantles. Studying the

Proteomic and transcriptomic analysis of Rhizobium

When we began the proteomic project with R. etli the genomic sequence was not available. Now, with the finished sequence, we also extended the analysis to the Sinorhizobium meliloti genome. To date, applying the 2D polyacrilamide gel electrophoresis technique (2D-PAGE) we have analyzed several physiological conditions of these

Carbon and nitrogen metabolism in Rhizobium

We began our studies in the determination of the cycle of the glutamine synthetase in the fungus Neurospora crassa and the enzymes that participate in the glutamate-glutamine interconversion in N. crassa and in the new model organism Rhizobium etli .