Sergio Manuel Encarnación Guevara

Functional Genomics of Prokaryotes Researcher

Full Professor

Academic history

Sergio Encarnación Guevara obtained a B.Sc. in Chemistry Biology and Parasitology, a M.Sc. in Parasitology, and a Ph.D. in Biomedical Research at the UNAM. Upon graduation he was postdoctoral fellow in the Department of Microbiology and Molecular Biology at Harvard University.
He has been part of the Center for Genomic Sciences (formerly the Research Center for Nitrogen Fixation) since 1988. He is a Professor in the area of Functional Genomics (Investigador Titular C), currently serves as Head of the Proteomics Laboratory at CCG and is National Scientist Level 3. His pioneer work contributed to the development the functional genomics in bacterial proteomics, transcriptomics and metabolomics.
He was trained in the laboratory of Frederick Neidhardt, who was a pioneer in proteomics. After completing his training, he initiated with his advisor, Dr. Jaime Mora, the first laboratory of proteomics founded in México. They published the first works in proteomics reported by a Mexican group. He also pioneered in transcriptomics by designing and building the first microarray of a complete genome in México (Rhizobium etli).

He currently has more than 70 papers in international peer-reviewed journals, as well as over 16 chapters in books. Dr. EncarnacióN-Guevara has presented conferences at the principal international congresses in his area and participated as a member of editorial and national and international scientific evaluation committees. He is also a founding member of the Mexican Genomics Society and founding member and member of the Board of Directors of the North American Metabolomics Society, and is currently President of the Mexican Proteomics Society.

He was very recently invited by the H-CPP of the Human Proteome Organization (HUPO) to lead and organize the Mexican team that is currently participating in the Human Proteome project with emphasis on the proteomic analysis of chromosome 19.
He has served UNAM as a member of different university councils and evaluating committees. Dr. EncarnacióN-Guevara has mentored several undergraduate and graduate students; some of his former students are posdocs or investigators in Mexico (UNAM, UAEM), Switzerland, Germany, Sweden, France, and Scotland.
Major research interests of his lab include cancer proteomics, tumoral dynamics, miRNAs, quantitative proteomics and posttranslational modifications of proteins, particularly phosphorylation and acetylation.

Links

Scopus

Telephone: (777) 3291899
Email: encarnac@ccg.unam.mx

Publications

YearPublicationPMID
2018Paik, Y.K., Lane, L., Kawamura, T., Chen, Y.J., Cho, J.Y., Labaer, J., Yoo, J.S., Domont, G., Corrales, F., Omenn, G.S., Archakov, A., Encarnación, S, Lui, S., Salekdeh, G.H., Cho, J.Y., Kim, C.Y. and Overall, C.M.. (2018). "Launching the C-HPP neXt-CP50 Pilot Project for Functional Characterization of Identified Proteins with No Known Function". J PROTEOME RES. 17(12):4042-4050. [doi:10.1021/acs.jproteome.8b00383]30269496
2018Aguilar, Cesar, Martínez-Batallar, AG, Flores, Noemi, Moreno-Avitia, Fabian, Encarnación, S, Escalante, Adelfo and Bolivar, Francisco. (2018). "Analysis of differentially upregulated proteins in ptsHIcrr(-) and rppH(-) mutants in Escherichia coli during an adaptive laboratory evolution experiment". Applied Microbiology And Biotechnology. 102(23):10193-10208. [doi:10.1007/s00253-018-9397-3]30284012
2018Guevara-Luna, J., Alvarez-Fitz, P., Ríos-Leal, E., Acevedo-Quiroz, M., Encarnación, S, Moreno-Godinez, M.E., Castellanos-Escamilla, M., Toribio-Jiménez, J. and Romero-Ramírez, Y.. (2018). "Biotransformation of benzo[a]pyrene by the thermophilic bacterium Bacillus licheniformis M2-7". World Journal Of Microbiology & Biotechnology. 34(7):88-. [doi:10.1007/s11274-018-2469-9]29886516
2017Hernandez-Vargas, Maria J., Gil, Jeovanis, Lozano, L, Pedraza-Escalona, Martha, Ortiz, Ernesto, Encarnación, S, Alagon, Alejandro and Corzo, Gerardo. (2017). "Proteomic and transcriptomic analysis of saliva components from the hematophagous reduviid Triatoma Pallidipennis". Journal Of Proteomics. 162():30-39. [doi:10.1016/j.jprot.2017.04.022]28442446
2017Gil, Jeovanis, Ramirez-Torres, Alberto and Encarnación, S. (2017). "Lysine acetylation and cancer: A proteomics perspective". Journal Of Proteomics. 150():297-309. [doi:10.1016/j.jprot.2016.10.003]27746255
2017Gil J, Ramírez-Torres A, Chiappe D, Luna-Peñaloza J, Fernandez-Reyes FC, Arcos-Encarnación B, Contreras-Martínez, S and Encarnación, S. (2017). "Lysine acetylation stoichiometry and proteomics analyses reveal pathways regulated by sirtuin 1 in human cells". JOURNAL OF BIOLOGICAL CHEMISTRY. 292(44):18129-18144. [doi:10.1074/jbc.M117.784546]28893905
2017Meneses, N., Taboada, H, Dunn, MF, Vargas, MC, Buchs, N., Heller, M. and Encarnación, S. (2017). "The naringenin-induced exoproteome of Rhizobium etli CE3". Archives Of Microbiology. 199(5):737-755. [doi:10.1007/s00203-017-1351-8]28255691
2017Herrera Y., Contreras-Martínez, S, Hernández M., Álvarez L., Mora Y. and Encarnación, S. (2017). "Displacers improve the selectivity of phosphopeptide enrichment by metal oxide affinity chromatography". Boletin Medico del Hospital Infantil de Mexico. 74(3):200-207. [doi:10.1016/j.bmhimx.2017.03.008]29382487
2017Patiño-Lopez G. and Encarnación, S. (2017). "Clinical Proteomics in Mexico: where do we stand?". Boletin Medico del Hospital Infantil de Mexico. 74(3):173-174. [doi:10.1016/j.bmhimx.2017.04.001]29382483
2017Encarnación, S. (2017). "The dawn and the first twenty-five years of proteomics in Mexico: a personal chronicle". Boletin Medico del Hospital Infantil de Mexico. 74(3):208-211. [doi:10.1016/j.bmhimx.2017.03.006]29382488
2016Alvarado-Delgado A, Perales Ortiz G, Tello-López ÁT, Encarnación, S, Conde R, Martínez-Batallar, AG, Moran-Francia K and Lanz-Mendoza H. (2016). "Infection with Plasmodium berghei ookinetes alters protein expression in the brain of Anopheles albimanus mosquitoes". PARASITES & VECTORS. 9(1):542-542. [doi:10.1186/s13071-016-1830-9]27724938
2016Peralta, H, Aguilar, A, Díaz-Mendez, R, Mora Y, Martínez-Batallar, AG, Salazar E, Vargas, MC, Martínez-Romero, E, Encarnación, S, Girard, L and Mora, J. (2016). "Genomic studies of nitrogen-fixing rhizobial strains from Phaseolus vulgaris seeds and nodules". Bmc Genomics. 17(1):1-1. [doi:10.1186/s12864-016-3053-z]27601031
2016Reyes-Perez, Agustin, Vargas, MC, Hérnandez, M, Aguirre-von-Wobeser, Eneas, Perez-Rueda, Ernesto and Encarnación, S. (2016). "Transcriptomic analysis of the process of biofilm formation in Rhizobium etli CFN42". Archives Of Microbiology. 198(9):847-860. [doi:10.1007/s00203-016-1241-5]27226009
2016Yadira Lopez-Chavez, Mariana, Guillen-Navarro, Karina, Bertolini, Vincenzo, Encarnación, S, Hérnandez, M, Sanchez-Moreno, Irene and Damon, Anne. (2016). "Proteomic and morphometric study of the in vitro interaction between Oncidium Sphacelatum Lindl. (Orchidaceae) and Thanatephorus sp RG26 (Ceratobasidiaceae)". Mycorrhiza. 26(5):353-365. [doi:10.1007/s00572-015-0676-x]26732875
2016Moreno Castillo, Benjamin, Dunn, MF, Guillen Navarro, Karina, Holguin Melendez, Francisco, Hérnandez, M, Encarnación, S and Huerta Palacios, Graciela. (2016). "Antifungal performance of extracellular chitinases and culture supernatants of Streptomyces galilaeus CFFSUR-B12 against Mycosphaerella Fijiensis Morelet". World Journal Of Microbiology & Biotechnology. 32(3):1-12. [doi:10.1007/s11274-015-1993-0]26873555
2016Guzman-Flores, Juan M., Flores-Perez, Elsa C., Hérnandez, M, Lopez-Briones, Sergio, Ramirez-Emiliano, Joel, Encarnación, S and Perez-Vazquez, Victoriano. (2016). "Comparative Proteomics of Liver of the Diabetic Obese db/db and Non-Obese or Diabetic Mice". Current Proteomics. 13(3):231-236. [doi:10.2174/1570164613666160722102430]
2014Trejo-Hernandez, Abigail, Andrade-Dominguez, Andres, Hérnandez, M and Encarnación, S. (2014). "Interspecies competition triggers virulence and mutability in Candida albicans-pseudomonas Aeruginosa mixed biofilms". ISME JOURNAL. 8(10):1974-1988. [doi:10.1038/ismej.2014.53]24739628
2014Mora, Yolanda, Díaz-Mendez, R, Vargas, MC, Peralta, H, Guerrero, G, Aguilar, A, Encarnación, S, Girard, L and Mora, J. (2014). "Nitrogen-fixing rhizobial strains isolated from common bean seeds: Phylogeny, physiology, and genome analysis". Applied And Environmental Microbiology. 80(18):5644-5654. [doi:10.1128/AEM.01491-14]25002426
2014Pérez-Vázquez, V., Guzmán-Flores, J.M., Mares-Alvarez, D., Hérnandez, M, Macias-Cervantes, M.H., Ramírez-Emiliano, J. and Encarnación, S. (2014). "Differential Proteomic Analysis of the Pancreas of Diabetic db/db Mice Reveals the Proteins Involved in the Development of Complications of Diabetes Mellitus". International Journal Of Molecular Sciences. 15(6):9579-9593. [doi:10.3390/ijms15069579]24886809
2014Villarreal, J.M., Becerra-Lobato, N., Rebollar-Flores, J.E., Medina-Aparicio, L., Carbajal-Gómez, E., Zavala-Garcia, M.L., Vázquez, A, Gutierrez-Ríos, R.M., Encarnación, S, Martínez-Batallar, AG, Calva, E. and Hernández-Lucas, I.. (2014). "The Salmonella enterica serovar Typhi ltrR-ompR-ompC-ompF genes are involved in resistance to the bile salt sodium deoxycholate and in bacterial transformation". Molecular Microbiology. 92(5):1005-1024. [doi:10.1111/mmi.12610]24720747
2014Andrade Domínguez, Andrés, Salazar Bustamante, Emmanuel, Vargas, MC, Kolter, R. and Encarnación, S. (2014). "Eco-evolutionary feedbacks drive species interactions". ISME JOURNAL. 8(5):1041-1054. [doi:10.1038/ismej.2013.208]24304674
2014Cocotl-Yañez, M., Moreno, S., Encarnación, S, López-Pliego, L., Castañeda, M. and Espín, G.. (2014). "A small heat-shock protein (Hsp20) regulated by RpoS is essential for cyst desiccation resistance in Azotobacter Vinelandii". MICROBIOLOGY-SGM. 160(3):479-487. [doi:10.1099/mic.0.073353-0]24385478
2013Higareda Almaraz, Juan Carlos, Valtierra Gutiérrez, Ilse Ariadna, Hérnandez, M, Contreras-Martínez, S, Hernádez, E. and Encarnación, S. (2013). "Analysis and Prediction of Pathways in HeLa Cells by Integrating Biological Levels of Organization with Systems-Biology Approaches". Plos One. 8(6):UNSP e65433-. [doi:10.1371/journal.pone.0065433]23785426
2013Esparza-Garrido, R.R., Velazquez-Flores, M.A., Diegoperez-Ramírez, J., López-Aguilar, E., Siordia-Reyes, G., Hérnandez, M, Martínez-Batallar, AG, Encarnación, S, Salamanca-Gomez, F. and Arenas-Aranda, D.J.. (2013). "A proteomic approach of pediatric astrocytomas: MiRNAs and network insight". Journal Of Proteomics. 94():162-175. [doi:10.1016/j.jprot.2013.09.009]24060999
2013Ramírez, M, Guillén, G., Fuentes, SI, Iñiguez Rabago, Luis Pedro, Aparicio Fabre, Rosaura, Zamorano-Sánchez, D, Encarnación, S, Panzeri, D., Castiglioni, B., Cremonesi, P., Strozzi, F., Stella, A., Girard, L, Sparvoli, F. and Hernández, G. (2013). "Transcript profiling of common bean nodules subjected to oxidative stress". Physiologia Plantarum. 149(3):389-407. [doi:10.1111/ppl.12040]23432573
2013de Luna,L. A., León, P., Encarnación, S and Guevara-García, A. A.. (2013). "Chloroplast omics". Barh Delmya. ():-.
2012Resendis Antonio, Osbaldo, Hérnandez, M, Pérez-Tejada Domínguez, Yolanda and Encarnación, S. (2012). "Functional Modules, Structural Topology, and Optimal Activity in Metabolic Networks". Plos Computational Biology. 8(10):1002720-. [doi:10.1371/journal.pcbi.1002720]23071431
2011Díaz-Mendez, R, Vargas, MC, Villalobos López, Miguel Angel, Peralta, H, Pérez-Tejada Domínguez, Yolanda, Encarnación, S, Girard, L and Mora, J. (2011). "argC orthologs from Rhizobiales show diverse profiles of transcriptional efficiency and functionality in Sinorhizobium meliloti". Journal Of Bacteriology. 193(2):460-472. [doi:10.1128/JB.01010-10]21075924
2010Salazar, Emmanuel, Diaz-Mejia, J. Javier, Moreno-Hagelsieb, Gabriel, Martínez-Batallar, AG, Mora, Yolanda, Mora, J and Encarnación, S. (2010). "Characterization of the nif A-RpoN regulon in Rhizobium etli in free life and in symbiosis with Phaseolus vulgaris". Applied And Environmental Microbiology. 76(13):4510-4520. [doi:10.1128/AEM.02007-09]20453139
2009Martinez-Salazar, Jaime M., Salazar, Emmanuel, Encarnación, S, Ramirez-Romero, Miguel A. and Rivera, J. (2009). "Role of the Extracytoplasmic Function Sigma Factor RpoE4 in Oxidative and Osmotic Stress Responses in Rhizobium etli". Journal Of Bacteriology. 191(13):4122-4132. [doi:10.1128/JB.01626-08]19376852
2009Rodriguez-Alvarez, Mauricio, Mendoza-Hernandez, Guillermo, Encarnación, S, Jose Calva, Juan and Lopez-Vidal, Yolanda. (2009). "Phenotypic differences between BCG vaccines at the proteome level". Tuberculosis. 89(2):126-135. [doi:10.1016/j.tube.2008.12.001]19231290
2009Balleza, Enrique, Lopez-Bojorquez, Lucia N., Martinez-Antonio, Agustino, Resendis-Antonio, Osbaldo, Lozada-Chavez, Irma, Balderas-Martinez, Yalbi I., Encarnación, S and Collado-Vides, J. (2009). "Regulation by transcription factors in bacteria: Beyond description". Fems Microbiology Reviews. 33(1):133-151. [doi:10.1111/j.1574-6976.2008.00145.x]19076632
2008Rodriguez-Perez, Mario A., Medina-Aunon, Alberto, Encarnación, S, Bernal-Silvia, Sofia, Barrera-Saldana, Hugo and Pablo Albar-Ramirez, Juan. (2008). "In Silico analysis of protein neoplastic biomarkers for cervix and uterine cancer". Clinical and Translational Oncology. 10(10):604-617. [doi:10.1007/s12094-008-0261-2]18940741
2008Hernandez-Lucas, I., Gallego-Hernandez, A. L., Encarnación, S, Fernandez-Mora, M., Martínez-Batallar, AG, Salgado, H, Oropeza, R. and Calva, E.. (2008). "The LysR-type transcriptional regulator LeuO controls expression of several genes in Salmonella enterica serovar typhi". Journal Of Bacteriology. 190(5):1658-1670. [doi:10.1128/JB.01649-07]18156266
2008Taboada, H, Encarnación, S, Vargas, MC, Mora, Yolanda, Miranda-Rios, Juan, Soberon, Mario and Mora, J. (2008). "Thiamine limitation determines the transition from aerobic to fermentative-like metabolism in Rhizobium etli CE3". Fems Microbiology Letters. 279(1):48-55. [doi:10.1111/j.1574-6968.2007.01006.x]18177306
2008Mora, J, Peralta, H and Encarnación, S. (2008). "Nitrógeno, fisiología y genómica". Descubrimientos y Aportaciones Científicas y Humanísticas Mexicanas en el Siglo XX. (0):642-651.
2008Vargas, MC, Villalobos, M.A., Díaz-Mendez, R, Flores, M.A., Contreras-Martínez, S, Encarnación, S, Pérez-Tejada Domínguez, Yolanda, Dunn, MF, Girard, L and Mora, J. (2008). "Comparative Analysis of argC protein expression in Rhizobium species". Current Plant Science and Biotechnology. Agriculture Biological Nitrogen Fixation, Sustainable Agriculture and the Environment. 42(0):239-240.
2008Encarnación, S, Salazar Bustamante, Emmanuel, Martínez-Batallar, AG, Hérnandez, M, Reyes Pérez, Agustín, Vargas, MC, Contreras-Martínez, S, Elizalde Contreras, José Miguel, Noguez, R., Meneses, M., Bueno, O., Sánchez, R., Pérez-Tejada Domínguez, Yolanda and Mora, J. (2008). "Proteomic and Transcriptomic Approaches to Study Global Genome Expression in Rhizobium etli and Sinorhizobium meliloti". Current Plant Science and Biotechnology. Agriculture Biological Nitrogen Fixation, Sustainable Agriculture and the Environment. 42():231-232.
2008Velazquez-Arellano, A., Cerevisiae, S., Elegans, C., Norvergicus, R., Ortega-Cuellar, D., Hernandez-Mendoza, A., Gonzalez-Alvarez, R., Encarnación, S, Salazar, E., Uribe-Carvajal, S. and Galvez-Mariscal, A.. (2008). "Biotin Is a Major Regulator of Carbon Fluxes Genes in Eukaryotes". JOURNAL OF NUTRIGENETICS AND NUTRIGENOMICS. 1(6):294-294.
2008Velázquez-Arellano A. and Encarnación, S. (2008). "Role of Proteomics in the Study of Nutrition". JOURNAL OF NUTRIGENETICS AND NUTRIGENOMICS. 1(1-2):55-58. [doi:10.1159/000109875]19918115
2007Resendis Antonio, Osbaldo, Reed, J.L., Encarnación, S, Collado-Vides, J and Palsson, B.O.. (2007). "Metabolic reconstruction and modeling of nitrogen fixation in Rhizobium etli". Plos Computational Biology. 3(10):1887-1895. [doi:10.1371/journal.pcbi.0030192]17922569
2007Ramirez-Trujillo, J. A., Encarnación, S, Salazar, E., García-de los Santos, A, Dunn, MF, Emerich, D. W., Calva, E. and Hernandez-Lucas, I.. (2007). "Functional characterization of the Sinorhizobium meliloti acetate metabolism genes aceA, SMc00767, and glcB". Journal Of Bacteriology. 189(16):5875-5884. [doi:10.1128/JB.00385-07]17526694
2006Batista, Cesar V. F., D'Suze, Gina, Gomez-Lagunas, Froylan, Zamudio, Fernando Z., Encarnación, S, Sevcik, Carlos and Possani, Lourival D.. (2006). "Proteomic analysis of Tityus discrepans scorpion venom and amino acid sequence of novel toxins". Proteomics. 6(12):3718-3727. [doi:10.1002/pmic.200500525]16705749
2006Encarnación, S, Salazar Bustamante, Emmanuel, Martínez-Batallar, AG, Hérnandez, M, Reyes Pérez, Agustín, Contreras-Martínez, S, Vargas, MC, Domínguez Vidaña, Rocío, Gonzaga Jáuregui, Claudia Gabriela, Pérez-Tejada Domínguez, Yolanda, Rivero Zaragoza, María Ricarda and Mora, J. (2006). "GENÓMICA FUNCIONAL EN RIZOBIACEAS". Revista Latinoamericana de Microbiología. 48(2):135-141.
2006Encarnación, S. (2006). "Genómica y genómica funcional en microbiología". Revista Latinoamericana de Microbiología. 48(2):131-132. 17578085
2005Encarnación, S, Hernandez, M, Martínez-Batallar, AG, Contreras-Martínez, S, Vargas, MD and Mora, J. (2005). "Comparative proteomics using 2-D gel electrophoresis and mass spectrometry as tools to dissect stimulons and regulons in bacteria with sequenced or partially sequenced genomes". BIOLOGICAL PROCEDURES ONLINE. 7():117-135. [doi:10.1251/bpo110]16145578
2005Encarnación, S, Salazar Bustamante, Emmanuel, Hérnandez, M, Martínez-Batallar, AG, García, J., Flores, H., Reyes Pérez, Agustín, Vargas, MC, Contreras-Martínez, S, Pérez-Tejada Domínguez, Yolanda and Mora, J. (2005). "Proteomic and transcriptomic approaches to study global genome expression in free-living and symbiotically-associated Rhizobium etli and Sinorhizobium meliloti". Current Plant Science and Biotechnology. Agriculture Biological Nitrogen Fixation, Sustainable Agriculture and the Environment. 41():142-.
2005Vargas, MC, Encarnación, S, Girard, L, Reyes Pérez, Agustín, Pérez-Tejada Domínguez, Yolanda and Mora, J. (2005). "Characterization of the alternative protection programs against oxidative-stress in free life and simbiosis from Rhizobium etli". Current Plant Science and Biotechnology. Agriculture Biological Nitrogen Fixation, Sustainable Agriculture and the Environment. 41():331-.
2005Encarnación, S. (2005). "The dawn of functional genomics in nitrogen fixation Research". Genomes and Genomics of Nitrogen Fixing Organisms. ():143-163.
2005Chavéz-Zamora, J.C., Salazar Bustamante, Emmanuel and Encarnación, S. (2005). "Global analisis of the genome expresion in Sinorhizobium meliloti strain 1021, using microarray". Current Plant Science and Biotechnology. Agriculture Biological Nitrogen Fixation, Sustainable Agriculture and the Environment. 41():331-.
2004Vargas, MC, Encarnación, S, Girard, L, Reyes, A., Mora, Y. and Mora, J. (2004). "Physiological and proteome characterizations of oxidative-stress response in Rhizobium etli during free life and symbiosis with Phaseolus vulgaris.". MOLECULAR & CELLULAR PROTEOMICS. 3(10, S):160-160.
2004Encarnación, S, Garcia, Juan, Hérnandez, M, Vargas, MC, Contreras, Sandra and Mora, J. (2004). "Protein expression during biofilm formation in Rhizobium etli and Sinorhizobium meliloti". MOLECULAR & CELLULAR PROTEOMICS. 3(10, S):150-150.
2004Peralta, H, Mora, Y, Salazar, E, Encarnación, S, Palacios, R and Mora, J. (2004). "Engineering the nifH promoter region and abolishing poly-ß -hydroxybutyrate accumulation in Rhizobium etli enhance nitrogen fixation in symbiosis with Phaseolus vulgaris". Applied And Environmental Microbiology. 70(6):3272-3281. [doi:10.1128/AEM.70.6.3272-3281.2004]15184121
2003Encarnación, S, Guzman, Y, Dunn, MF, Hernandez, M, Vargas, MD and Mora, J. (2003). "Proteome analysis of aerobic and fermentative metabolism in Rhizobium etli CE3". Proteomics. 3(6):1077-1085. [doi:10.1002/pmic.200300427]12833533
2003Vargas, MD, Encarnación, S, Dávalos, A, Reyes-Perez, A, Mora, Y, García-de los Santos, A, Brom, S and Mora, J. (2003). "Only one catalase, katG, is detectable in Rhizobium etli, and is encoded along with the regulator OxyR on a plasmid replicon". MICROBIOLOGY-SGM. 149(5):1165-1176. [doi:10.1099/mic.0.25909-0]12724378
2002Encarnación, S, Vargas, MC, Dunn, MF, Dávalos, A, Mendoza, G, Mora, Y and Mora, J. (2002). "aniA regulates reserve polymer accumulation and global protein expression in Rhizobium etli". Journal Of Bacteriology. 184(8):2287-2295. [doi:10.1128/JB.184.8.2287-2295.2002]11914361
2002Dunn, MF, Araiza, G, Encarnación, S, Vargas, MC and Mora, J. (2002). "Effect of aniA (carbon flux regulator) and phaC (poly-ß-hydroxybutyrate synthase) mutations on pyruvate metabolism in Rhizobium etli". Journal Of Bacteriology. 184(8):2296-2299. [doi:10.1128/JB.184.8.2296-2299.2002]11914362
2000Castillo, A, Taboada, H, Mendoza, A, Valderrama, B, Encarnación, S and Mora, J. (2000). "Role of GOGAT in carbon and nitrogen partitioning in Rhizobium etli". MICROBIOLOGY-SGM. 146(7):1627-1637. [doi:10.1099/00221287-146-7-1627]10878127
1998Mandon, K, Michel-Reydellet, N, Encarnación, S, Kaminski, PA, Leija, A, Cevallos, MA, Elmerich, C and Mora, J. (1998). "Poly-ß-hydroxybutyrate turnover in Azorhizobium caulinodans is required for growth and affects nifA expression". Journal Of Bacteriology. 180(19):5070-5076. 9748438
1998Encarnación, S, Calderon, J, Gelbard, AS, Cooper, AJL and Mora, J. (1998). "Glutamine biosynthesis and the utilization of succinate and glutamine by Rhizobium etli and Sinorhizobium meliloti". MICROBIOLOGY-SGM. 144(9):2629-2638. [doi:10.1099/00221287-144-9-2629]9782512
1997MirandaRios, J, Morera, C, Taboada, H, Dávalos, A, Encarnación, S, Mora, J and Soberon, M. (1997). "Expression of thiamin biosynthetic genes (thiCOGE) and production of symbiotic terminal oxidase cbb(3), in Rhizobium etli". Journal Of Bacteriology. 179(22):6887-6893. [doi:10.1128/jb.179.22.6887-6893.1997]9371431
1996Dunn, MF, Encarnación, S, Araiza, G, Vargas, MC, Dávalos, A, Peralta, H, Mora, Y and Mora, J. (1996). "Pyruvate carboxylase from Rhizobium etli: Mutant characterization, nucleotide sequence, and physiological role". Journal Of Bacteriology. 178(20):5960-5970. [doi:10.1128/jb.178.20.5960-5970.1996]8830693
1996Taboada, H, Encarnación, S, Vargas, MD, Mora, Y, Martínez-Romero, E and Mora, J. (1996). "Glutamine synthetase II constitutes a novel taxonomic marker in Rhizobium etli and other Rhizobium species". INTERNATIONAL JOURNAL OF SYSTEMATIC BACTERIOLOGY. 46(2):485-491. [doi:10.1099/00207713-46-2-485]
1996Cevallos, MA, Encarnación, S, Leija, A, Mora, Y and Mora, J. (1996). "Genetic and physiological characterization of a Rhizobium etli mutant strain unable to synthesize poly-ß-hydroxybutyrate". Journal Of Bacteriology. 178(6):1646-1654. [doi:10.1128/jb.178.6.1646-1654.1996]8626293
1995Encarnación, S, Dunn, MF, WILLMS, K and Mora, J. (1995). "Fermentative and aerobic metabolism in Rhizobium etli". Journal Of Bacteriology. 177(11):3058-3066. [doi:10.1128/jb.177.11.3058-3066.1995]7768801
2005Guillen-Navarro, K, Encarnación, S and Dunn, MF. (2005). "Biotin biosynthesis, transport and utilization in Rhizobia". Fems Microbiology Letters. 246(2):159-165. [doi:10.1016/j.femsle.2005.04.020]15899401
2014Garibay-Cerdenares, O.L., Hernández-Ramírez, V.I., Osorio-Trujillo, J.C., Hérnandez, M, Gallardo-Rincón, D., Cantú de León, D., Encarnación, S, Villegas-Pineda, J.C. and Talamas-Rohana, P.. (2014). "Proteomic identification of fucosylated haptoglobin alpha isoforms in ascitic fluids and its localization in ovarian carcinoma tissues from Mexican patients". Journal Of Ovarian Research. 7(1):27-27. [doi:10.1186/1757-2215-7-27]24576319
2018Taboada, H, Meneses N, Dunn, MF, Vargas, MC, Buchs N, Castro-Mondragón JA, Heller M and Encarnación, S. (2018). "Proteins in the periplasmic space and outer membrane vesicles of Rhizobium etli CE3 grown in minimal medium are largely distinct and change with growth phase.". MICROBIOLOGY-SGM. ():-. [doi:10.1099/mic.0.000720]30358529
2018Fernández-Coto, D.L., Gil, J., Hernández, A., Herrera-Goepfert, R., Castro-Romero, I., Hernández-Márquez, E., Arenas-Linares, A.S., Calderon-Sosa, V.T., Sanchez-Aleman, M.Á., Mendez-Tenorio, A., Encarnación, S and Ayala, G.. (2018). "Quantitative proteomics reveals proteins involved in the progression from non-cancerous lesions to gastric cancer". Journal Of Proteomics. 186():15-27. [doi:10.1016/j.jprot.2018.07.013]30048774
2018Toledo-Leyva, Alfredo, Cesar Villegas-Pineda, Julio, Encarnación, S, Gallardo-Rincon, Dolores and Talamas-Rohana, Patricia. (2018). "Effect of ovarian cancer ascites on SKOV-3 cells proteome: new proteins associated with aggressive phenotype in epithelial ovarian cancer". Proteome Science. 16():3-3. [doi:10.1186/s12953-018-0133-9]29456457
2017Vargas, MC, Mora, Yolanda, Díaz-Mendez, R, Martínez-Batallar, AG, Girard, L, Encarnación, S, Peralta, H and Mora, J. (2017). "Overproduction of Sinorhizobium meliloti argC (N-acetyl-gamma-glutamyl phosphate reductase) promotes growth delay and inefficient nodules". Fems Microbiology Letters. 364(23):fnx233-. [doi:10.1093/femsle/fnx233]29121239
2016Santillán O, Ramírez-Romero MA, Lozano, L, Checa A, Encarnación, S and Dávila G. (2016). "Region 4 of Rhizobium etli primary sigma factor (SigA) confers transcriptional laxity in Escherichia coli". Frontiers in Microbiology. 7(JUL):1078-1078. [doi:10.3389/fmicb.2016.01078]27468278
2016Diener C, Muñoz-Gonzalez F, Encarnación, S and Resendis-Antonio O. (2016). "The space of enzyme regulation in HeLa cells can be inferred from its intracellular metabolome". SCIENTIFIC REPORTS. 6():28415-28415. [doi:10.1038/srep28415]27335086
2013Rodríguez-Cruz, M., Coral-Vázquez, R.M., Hernández-Stengele, G., Sánchez, R., Salazar Bustamante, Emmanuel, Sánchez-Muñoz, F., Encarnación, S and Ramirez-Salcedo, J.. (2013). "Identification of Putative Ortholog Gene Blocks Involved in Gestant and Lactating Mammary Gland Development: A Rodent Cross- Species Microarray Transcriptomics Approach". INTERNATIONAL JOURNAL OF GENOMICS. 2013():624681-624681. [doi:10.1155/2013/624681]24288657
2009Laura Ramos-Vega, Ana, Davila-Martinez, Yadira, Sohlenkamp, C, Contreras-Martínez, S, Encarnación, S, Geiger, O and López-Lara, IM. (2009). "SMb20651 is another acyl carrier protein from Sinorhizobium meliloti". MICROBIOLOGY-SGM. 155(1):257-267. [doi:10.1099/mic.0.022079-0]19118366
2012Sánchez, D.G., Otero, L.H., Hérnandez, M, Serra, A.L., Encarnación, S, Domenech, C.E. and Lisa, A.T.. (2012). "A pseudomonas Aeruginosa PA01 acetylcholinesterase is encoded by the PA4921 gene and belongs to the SGNH hydrolase family". Microbiological Research. 167(6):317-325. [doi:10.1016/j.micres.2011.11.005]22192836
2012Cancino-Rodezno, A., Lozano, L, Oppert, C., Castro, J.I., Lanz-Mendoza, H., Encarnación, S, Evans, A.E., Gill, S.S., Soberon, M., Jurat-Fuentes, J.L. and Bravo, A.. (2012). "Comparative proteomic analysis of Aedes Aegypti larval midgut after intoxication with Cry11Aa toxin from Bacillus thuringiensis". Plos One. 7(5):37034-. [doi:10.1371/journal.pone.0037034]22615881
2012Martínez-Gómez, K., Flores, N., Castañeda, H.M., Martínez-Batallar, AG, Hernández-Chávez, G., Ramírez, O.T., Gosset, G., Encarnación, S and Bolivar, F.. (2012). "New insights into Escherichia coli metabolism: carbon scavenging, acetate metabolism and carbon recycling responses during growth on glycerol". Microbial Cell Factories. 11():46-46. [doi:10.1186/1475-2859-11-46]22513097
2011Resendis Antonio, Osbaldo, Hérnandez, M, Salazar Bustamante, Emmanuel, Contreras-Martínez, S, Martínez-Batallar, AG, Pérez-Tejada Domínguez, Yolanda and Encarnación, S. (2011). "Systems biology of bacterial nitrogen fixation: High-throughput technology and its integrative description with constraint-based modeling". Bmc Systems Biology. 5():120-120. [doi:10.1186/1752-0509-5-120]21801415
2011Higareda Almaraz, Juan Carlos, Enríquez Gasca, María del Rocío, Hérnandez, M, Resendis Antonio, Osbaldo and Encarnación, S. (2011). "Proteomic patterns of cervical cancer cell lines, a network perspective". Bmc Systems Biology. 5():96-96. [doi:10.1186/1752-0509-5-96]21696634
2010Resendis-Antonio, Osbaldo, Checa, Alberto and Encarnación, S. (2010). "Modeling Core Metabolism in Cancer Cells: Surveying the Topology Underlying the Warburg Effect". Plos One. 5(8):e12383-. [doi:10.1371/journal.pone.0012383]20811631
2010Davila-Martinez, Yadira, Laura Ramos-Vega, Ana, Contreras-Martínez, S, Encarnación, S, Geiger, O and López-Lara, IM. (2010). "SMc01553 is the sixth acyl carrier protein in Sinorhizobium meliloti 1021". MICROBIOLOGY-SGM. 156(1):230-239. [doi:10.1099/mic.0.033480-0]19797355
2010Meneses Moreno, Niurka, Mendonza-Hernández, G. and Encarnación, S. (2010). "The extracellular proteome of Rhizobium etli CE3 in exponential and stationary growth phase". Proteome Science. 8():51-51. [doi:10.1186/1477-5956-8-51]20942974