Publications

YearPublicationPMID
2018Sandner-Miranda, Luisa, Vinuesa, Pablo, Cravioto, Alejandro, Morales-Espinosa, Rosario (2018) The Genomic Basis of Intrinsic and Acquired Antibiotic Resistance in the Genus Serratia Frontiers in Microbiology 9(MAY):828-828 [doi:10.3389/fmicb.2018.00828]29867787
2018Vinuesa, P., Ochoa-Sánchez, L.E., Contreras-Moreira, B. (2018) GET_PHYLOMARKERS, a software package to select optimal orthologous clusters for phylogenomics and inferring pan-genome phylogenies, used for a critical geno-taxonomic revision of the genus Stenotrophomonas Frontiers in Microbiology 9(MAY):771-771 [doi:10.3389/fmicb.2018.00771]29765358
2018Rodriguez-Beltran, J., Hernandez-Beltran, J.C.R., Delafuente, J., Escudero, J.A., Fuentes-Hernandez, A., MacLean, R.C., Peña-Miller, R., San Millan, A. (2018) Multicopy plasmids allow bacteria to escape from fitness trade-offs during evolutionary innovation Nature Ecology & Evolution 2(5):873-881 [doi:10.1038/s41559-018-0529-z]29632354
2018Frisch MB, Castillo-Ramirez S, Petit RA 3rd, Farley MM, Ray SM, Albrecht VS, Limbago BM, Hernandez J, See I, Satola SW, Read TD (2018) Invasive Methicillin-Resistant Staphylococcus aureus USA500 Strains from the U.S. Emerging Infections Program Constitute Three Geographically Distinct Lineages. mSphere 3(3):- [doi:10.1128/mSphere.00571-17]29720528
2018Becerra-Rivera, V.A., Bergström, E., Thomas-Oates, J., Dunn, M.F. (2018) Polyamines are required for normal growth in sinorhizobium meliloti MICROBIOLOGY-SGM 164(4):600-613 [doi:10.1099/mic.0.000615]29619919
2018Hölzl G, Sohlenkamp C, Vences-Guzmán MA, Gisch N (2018) Headgroup hydroxylation by OlsE occurs at the C4 position of ornithine lipid and is widespread in proteobacteria and bacteroidetes. CHEM PHYS LIPIDS 213():32-38 [doi:10.1016/j.chemphyslip.2018.03.002]29524395
2018Kumar, K. Mohan, Mahendhiran, M., Casales Diaz, M., Hernandez-Como, N., Hernandez-Eligio, A., Torres-Torres, Gilberto, Godavarthi, S., Martinez Gomez, L. (2018) Green synthesis of Ce3+ rich CeO2 nanoparticles and its antimicrobial studies MATERIALS LETTERS 214():15-19 [doi:10.1016/j.matlet.2017.11.097]
2018Seulveda-Cisternas, Ignacio, Lozano Aguirre, Luis, Fuentes Flores, Andres, Solis de Ovando, Ignacio Vasquez, Antonio Garcia-Angulo, Victor (2018) Transcriptomics reveals a cross-modulatory effect between riboflavin and iron and outlines responses to riboflavin biosynthesis and uptake in Vibrio cholerae SCIENTIFIC REPORTS 8():3149- [doi:10.1038/s41598-018-21302-3]
2018Toledo-Leyva, Alfredo, Cesar Villegas-Pineda, Julio, Encarnacion-Guevara, Sergio, Gallardo-Rincon, Dolores, Talamas-Rohana, Patricia (2018) Effect of ovarian cancer ascites on SKOV-3 cells proteome: new proteins associated with aggressive phenotype in epithelial ovarian cancer Proteome Science 16():3- [doi:10.1186/s12953-018-0133-9]29456457
2018Mendoza-Hoffmann, F., Pérez-Oseguera, Á., Cevallos, M.Á., Zarco-Zavala, M., Ortega, R., Peña-Segura, C., Espinoza-Simón, E., Uribe-Carvajal, S., García-Trejo, J.J. (2018) The Biological Role of the zeta Subunit as Unidirectional Inhibitor of the F1FO-ATPase of Paracoccus denitrificans CELL REPORTS 22(4):1067-1078 [doi:10.1016/j.celrep.2017.12.106]29386127
2018Conde-Álvarez R, Palacios-Chaves L, Gil-Ramírez Y, Salvador-Bescós M, Bárcena-Varela M, Aragón-Aranda B, Martínez-Gómez E, Zúñiga-Ripa A, de Miguel MJ, Bartholomew TL, Hanniffy S, Grilló MJ, Vences-Guzmán MÁ, Bengoechea JA, Arce-Gorvel V, Gorvel JP, Moriyón I, Iriarte M (2018) Identification of lptA, lpxE, and lpxO, Three Genes Involved in the Remodeling of Brucella Cell Envelope Frontiers in Microbiology 8():2657-2657 [doi:10.3389/fmicb.2017.02657]29375522
2018Julieta Solis-Gonzalez, Claudia, Dominguez-Malfavon, Lilianha, Vargas-Suarez, Martin, Gaytan, Itzel, Angel Cevallos, Miguel, Lozano, Luis, Javier Cruz-Gomez, M., Loza-Tavera, Herminia (2018) Novel Metabolic Pathway for N-Methylpyrrolidone Degradation in Alicycliphilus sp Strain BQ1 Applied And Environmental Microbiology 84(1):UNSP e02136-17- [doi:10.1128/AEM.02136-17]29030443
2018Martinez-Romero, Esperanza, Rodriguez-Medina, Nadia, Beltran-Rojel, Marilu, Silva-Sanchez, Jesus, Barrios-Camacho, Humberto, Perez-Rueda, Ernesto, Garza-Ramos, Ulises (2018) Genome misclassification of Klebsiella variicola and Klebsiella quasipneumoniae isolated from plants, animals and humans Salud Publica De Mexico 60(1):56-62 [doi:10.21149/8149]29689657
2018Chiozzotto, Remo, Ramirez, Mario, Talbi, Chouhra, Cominelli, Eleonora, Girard, Lourdes, Sparvoli, Francesca, Hernandez, Georgina (2018) Characterization of the Symbiotic Nitrogen-Fixing Common Bean Low Phytic Acid (lpa1) Mutant Response to Water Stress Genes 9(2):99- [doi:10.3390/genes9020099]29462877
2018Blanc, Catherine, Coluccia, Fania, L'Haridon, Floriane, Torres, Martha, Ortiz-Berrocal, Marlene, Stahl, Elia, Reymond, Philippe, Schreiber, Lukas, Nawrath, Christiane, Metraux, Jean-Pierre, Serrano, Mario (2018) The Cuticle Mutant eca2 Modifies Plant Defense Responses to Biotrophic and Necrotrophic Pathogens and Herbivory Insects Molecular Plant-Microbe Interactions 31(3):344-355 [doi:10.1094/MPMI-07-17-0181-R]29130376
2018Chen, Lin-Xing, Mendez-Garcia, Celia, Dombrowski, Nina, Servin-Garciduenas, Luis E., Eloe-Fadrosh, Emiley A., Fang, Bao-Zhu, Luo, Zhen-Hao, Tan, Sha, Zhi, Xiao-Yang, Hua, Zheng-Shuang, Martinez-Romero, Esperanza, Woyke, Tanja, Huang, Li-Nan, Sanchez, Jesus, Isabel Pelaez, Ana, Ferrer, Manuel, Baker, Brett J., Shu, Wen-Sheng (2018) Metabolic versatility of small archaea Micrarchaeota and Parvarchaeota Isme Journal 12(3):756-775 [doi:10.1038/s41396-017-0002-z]29222443
2018Martinez-Romero, Esperanza, Rodriguez-Medina, Nadia, Beltran-Rojel, Marilu, Toribio-Jimenez, Jeiry, Garza-Ramos, Ulises (2018) Klebsiella variicola and Klebsiella quasipneumoniae with capacity to adapt to clinical and plant settings Salud Publica De Mexico 60(1):29-40 [doi:10.21149/8156]29689654
2017González-Sánchez A, Cubillas CA, Miranda F, Dávalos A, García-de Los Santos A (2017) The ropAe gene encodes a porin-like protein involved in copper transit in Rhizobium etli CFN42. MICROBIOLOGYOPEN ():- [doi:10.1002/mbo3.573]29280343
2017Silva, Claudia, Betancor, Laura, Garcia, Coralith, Astocondor, Lizeth, Hinostroza, Noemi, Bisio, Julieta, Rivera, Javier, Perezgasga, Lucia, Perez Escanda, Victoria, Yim, Lucia, Jacobs, Jan, Garcia-del Portillo, Francisco, Chabalgoity, Jose A., Puente, Jose L., SalmoIber CYTED Network (2017) Characterization of Salmonella enterica isolates causing bacteremia in Lima, Peru, using multiple typing methods Plos One 12(12):e0189946- [doi:10.1371/journal.pone.0189946]29267322
2017Marin, R., Cortez, D., Lamanna, F., Pradeepa, M.M., Leushkin, E., Julien, P., Liechti, A., Halbert, J., Brüning, T., Mössinger, K., Trefzer, T., Conrad, C., Kerver, H.N., Wade, J., Tschopp, P., Kaessmann, H. (2017) Convergent origination of a Drosophila-like dosage compensation mechanism in a reptile lineage GENOME RESEARCH 27(12):1974-1987 [doi:10.1101/gr.223727.117]29133310
2017Ruíz-Valdiviezo VM, Rogel-Hernandez MA, Guerrero G, Rincón-Molina CI, García-Perez LG, Gutiérrez-Miceli FA, Villalobos-Maldonado JJ, López-López A, Martinez-Romero E, Rincón-Rosales R (2017) Complete genome sequence of a novel nonnodulating Rhizobium species isolated from Agave americana L. rhizosphere Genome announcements 5(46):e01280-17- [doi:10.1128/genomeA.01280-17]29146860
2017Gil J, Ramírez-Torres A, Chiappe D, Luna-Peñaloza J, Fernandez-Reyes FC, Arcos-Encarnación B, Contreras S, Encarnación-Guevara S (2017) Lysine acetylation stoichiometry and proteomics analyses reveal pathways regulated by sirtuin 1 in human cells Journal Of Biological Chemistry 292(44):18129-18144 [doi:10.1074/jbc.M117.784546]28893905
2017López-Lara, I.M., Geiger, O. (2017) Bacterial lipid diversity Biochimica Et Biophysica Acta-Molecular And Cell Biology Of Lipids 1862(11):1287-1299 [doi:10.1016/j.bbalip.2016.10.007]27760387
2017Olvera, C., Santamaría, R.I., Bustos, P., Vallejo, C., Montor, J.J., Wacher, C., Munguia, A.L. (2017) Draft genome sequence of Leuconostoc citreum CW28 isolated from pozol, a pre-Hispanic fermented corn beverage Genome announcements 5(48):e01283-17- [doi:10.1128/genomeA.01283-17]
2017Sandoval-Calderón M, Guan Z, Sohlenkamp C (2017) Knowns and unknowns of membrane lipid synthesis in streptomycetes Biochimie 141():21-29 [doi:10.1016/j.biochi.2017.05.008]28522365
2017Montes-Grajales, Diana, Fennix-Agudelo, Mary, Miranda-Castro, Wendy (2017) Occurrence of personal care products as emerging chemicals of concern in water resources: A review SCIENCE OF THE TOTAL ENVIRONMENT 595():601-614 [doi:10.1016/j.scitotenv.2017.03.286]28399499
2017Graña-Miraglia L, Lozano LF, Velázquez C, Volkow-Fernández P, Pérez-Oseguera Á, Cevallos MA, Castillo-Ramírez S (2017) Rapid Gene Turnover as a Significant Source of Genetic Variation in a Recently Seeded Population of a Healthcare-Associated Pathogen Frontiers in Microbiology 8():1817-1817 [doi:10.3389/fmicb.2017.01817]28979253
2017Freyre-González, J.A., Tauch, A. (2017) Functional architecture and global properties of the Corynebacterium glutamicum regulatory network: Novel insights from a dataset with a high genomic coverage Journal Of Biotechnology 257():199-210 [doi:10.1016/j.jbiotec.2016.10.025]27829123
2017Pérez-Oseguera Á, Castro-Jaimes S, Salgado-Camargo AD, Silva-Sanchez J, Garza-González E, Castillo-Ramírez S, Cevallos MÁ (2017) Complete genome sequence of a blaOXA-58-producing Acinetobacter baumannii strain isolated from a Mexican hospital Genome announcements 5(36):e00949-17- [doi:10.1128/genomeA.00949-17]28883144
2017Ormeño-Orrillo E, Rey L, Durán D, Canchaya CA, Rogel MA, Zúñiga-Dávila D, Imperial J, Ruiz-Argüeso T, Martínez-Romero E (2017) Draft genome sequence of Bradyrhizobium paxllaeri LMTR 21T isolated from Lima bean (Phaseolus lunatus) in Peru Genomics Data 13():38-40 [doi:10.1016/j.gdata.2017.06.008]28721334
2017Ormeño-Orrillo E, Rey L, Durán D, Canchaya CA, Zúñiga-Dávila D, Imperial J, Martínez-Romero E, Ruiz-Argüeso T (2017) Genome sequence of Bradyrhizobium sp. LMTR 3, a diazotrophic symbiont of Lima bean (Phaseolus lunatus) Genomics Data 13():35-37 [doi:10.1016/j.gdata.2017.06.007]28702356
2017Link V, Aguilar-Gómez D, Ramírez-Suástegui C, Hurst LD, Cortez D (2017) Male Mutation Bias Is the Main Force Shaping Chromosomal Substitution Rates in Monotreme Mammals. Genome Biology And Evolution 9(9):2198-2210 [doi:10.1093/gbe/evx155]28922870
2017Saucedo-Mora, Miguel A., Castaneda-Tamez, Paulina, Cazares, Adrian, Perez-Velazquez, Judith, Hense, Burkhard A., Cazares, Daniel, Figueroa, Wendy, Carballo, Marco, Guarneros, Gabriel, Perez-Eretza, Berenice, Cruz, Nelby, Nishiyama, Yoshito, Maeda, Toshinari, Belmont-Diaz, Javier A., Wood, Thomas K., Garcia-Contreras, Rodolfo (2017) Selection of Functional Quorum Sensing Systems by Lysogenic Bacteriophages in Pseudomonas aeruginosa Frontiers in Microbiology 8():1669- [doi:10.3389/fmicb.2017.01669]28912771
2017Aragon, Wendy, Juan Reina-Pinto, Jose, Serrano, Mario (2017) The intimate talk between plants and microorganisms at the leaf surface Journal Of Experimental Botany 68(19, SI):5339-5350 [doi:10.1093/jxb/erx327]29136456
2017Iñiguez LP, Ramírez M, Barbazuk WB, Hernández G (2017) Identification and analysis of alternative splicing events in Phaseolus vulgaris and Glycine max Bmc Genomics 18(1):650-650 [doi:10.1186/s12864-017-4054-2]28830361
2017Ochoa-Sánchez LE, Vinuesa P (2017) Evolutionary Genetic Analysis Uncovers Multiple Species with Distinct Habitat Preferences and Antibiotic Resistance Phenotypes in the Stenotrophomonas maltophilia Complex Frontiers in Microbiology 8():1548-1548 [doi:10.3389/fmicb.2017.01548]28861062
2017Steffani-Vallejo, J.L., Zuñiga, C., Cruz-Morales, P., Lozano, L., Morales, M., Licona-Cassani, C., Revah, S., Utrilla, J. (2017) Draft Genome Sequence of Sphingobacterium sp. CZ-UAM, Isolated from a Methanotrophic Consortium. Genome announcements 5(33):e00792-17- [doi:10.1128/genomeA.00792-17]28818899
2017Ledezma-Tejeida D, Ishida C, Collado-Vides J (2017) Genome-Wide Mapping of Transcriptional Regulation and Metabolism Describes Information-Processing Units in Escherichia coli Frontiers in Microbiology 8(AUG):1466-1466 [doi:10.3389/fmicb.2017.01466]28824593
2017Salleh, F.M., Ramos-Madriga, J., Peñaloza, F., Liu, S., Sinding, M.H.S., Patel, R.P., Martins, R., Lenz, D., Fickel, J., Roos, C., Shamsir, M.S., Azman, M.S., Lim, B.K., Rossiter, S.J., Wilting, A., Gilbert, M.T.P. (2017) An expanded mammal mitogenome dataset from Southeast Asia GigaScience 6(8):1-8 [doi:10.1093/gigascience/gix053]28873965
2017Cubillas, C., Miranda-Sánchez, F., González-Sánchez, A., Elizalde, J.P., Vinuesa, P., Brom, S., García-de los Santos, A. (2017) A comprehensive phylogenetic analysis of copper transporting P-1B ATPases from bacteria of the Rhizobiales order uncovers multiplicity, diversity and novel taxonomic subtypes MICROBIOLOGYOPEN 6(4):e00452- [doi:10.1002/mbo3.452]28217917
2017Santamaría RI, Bustos P, Pérez-Carrascal OM, Miranda-Sánchez F, Vinuesa P, Martínez-Flores I, Juárez S, Lozano L, Martínez-Romero E, Cevallos MÁ, Romero D, Dávila G, Ormeño-Orrillo E, González V (2017) Complete Genome Sequences of Eight Rhizobium Symbionts Associated with Common Bean (Phaseolus vulgaris). Genome announcements 5(30):- [doi:10.1128/genomeA.00645-17]28751391
2017Meneses, N., Taboada, H., Dunn, M.F., Vargas, M.d.C., Buchs, N., Heller, M., Encarnación, S. (2017) The naringenin-induced exoproteome of Rhizobium etli CE3 Archives Of Microbiology 199(5):737-755 [doi:10.1007/s00203-017-1351-8]28255691
2017Martínez-Flores, W.A., Palma-García, J.M., Caballero-Ortega, H., Del Viento-Camacho, A., López-Escamilla, E., Martínez-Hernández, F., Vinuesa, P., Correa, D., Maravilla, P. (2017) Genotyping Toxoplasma gondii with the B1 Gene in Naturally Infected Sheep from an Endemic Region in the Pacific Coast of Mexico VECTOR-BORNE AND ZOONOTIC DISEASES 17(7):495-502 [doi:10.1089/vbz.2016.2085]28530509
2017Sigala, J.C., Suárez, B.P., Lara, A.R., Borgne, S.L., Bustos, P., Santamaría, R.I., González, V., Martinez, A. (2017) Genomic and physiological characterization of a laboratory-isolated Acinetobacter schindleri ACE strain that quickly and efficiently catabolizes acetate MICROBIOLOGY-SGM 163(7):1052-1064 [doi:10.1099/mic.0.000488]28671531
2017De Las Rivas J, Bonavides-Martínez C, Campos-Laborie FJ (2017) Bioinformatics in Latin America and SoIBio impact, a tale of spin-off and expansion around genomes and protein structures. BRIEF BIOINFORM ():- [doi:10.1093/bib/bbx064]28981567
2017Fernandez-Retana, Jorge, Zamudio-Meza, Horacio, Rodriguez-Morales, Miguel, Pedroza-Torres, Abraham, Isla-Ortiz, David, Herrera, Luis, Jacobo-Herrera, Nadia, Peralta-Zaragoza, Oscar, Lopez-Camarillo, Cesar, Morales-Gonzalez, Fermin, Cantu de Leon, David, Perez-Plasencia, Carlos (2017) Gene signature based on degradome-related genes can predict distal metastasis in cervical cancer patients TUMOR BIOLOGY 39(6):711895- [doi:10.1177/1010428317711895]28639897
2017Moreno-Avitia, F., Lozano, L., Utrilla, J., Bolívar, F., Escalante, A. (2017) Draft Genome Sequence of Pseudomonas chlororaphis ATCC 9446, a Nonpathogenic Bacterium with Bioremediation and Industrial Potential. Genome announcements 5(23):e00474-17- [doi:10.1128/genomeA.00474-17]28596401
2017Hernandez-Vargas, Maria J., Gil, Jeovanis, Lozano, Luis, Pedraza-Escalona, Martha, Ortiz, Ernesto, Encarnacion-Guevara, Sergio, Alagon, Alejandro, Corzo, Gerardo (2017) Proteomic and transcriptomic analysis of saliva components from the hematophagous reduviid Triatoma pallidipennis Journal Of Proteomics 162():30-39 [doi:10.1016/j.jprot.2017.04.022]28442446
2017Degli Esposti M, Martinez Romero E (2017) The functional microbiome of arthropods Plos One 12(5):e0176573- [doi:10.1371/journal.pone.0176573]28475624
2017Cruz-Dávalos, D.I., Llamas, B., Gaunitz, C., Fages, A., Gamba, C., Soubrier, J., Librado, P., Seguin-Orlando, A., Pruvost, M., Alfarhan, A.H., Alquraishi, S.A., Al-Rasheid, K.A.S., Scheu, A., Beneke, N., Ludwig, A., Cooper, A., Willerslev, E., Orlando, L. (2017) Experimental conditions improving in-solution target enrichment for ancient DNA MOL ECOL RESOUR 17(3):508-522 [doi:10.1111/1755-0998.12595]27566552
2017Balderas-Martínez YI, Rinaldi F, Contreras G, Solano-Lira H, Sánchez-Pérez M, Collado-Vides J, Selman M, Pardo A (2017) Improving biocuration of microRNAs in diseases: a case study in idiopathic pulmonary fibrosis DATABASE-THE JOURNAL OF BIOLOGICAL DATABASES AND CURATION 2017():bax030- [doi:10.1093/database/bax030]28605770
2017Pannier L, Merino E, Marchal K, Collado-Vides J (2017) Effect of genomic distance on coexpression of coregulated genes in E. coli Plos One 12(4):e0174887- [doi:10.1371/journal.pone.0174887]28419102
2017Osorio A, Camarena L, Cevallos MA, Poggio S (2017) A New Essential Cell Division Protein in Caulobacter crescentus Journal Of Bacteriology 199(8):UNSP e00811-16- [doi:10.1128/JB.00811-16]28167520
2017Beardmore, Robert Eric, Pena-Miller, Rafael, Gori, Fabio, Iredell, Jonathan (2017) Antibiotic Cycling and Antibiotic Mixing: Which One Best Mitigates Antibiotic Resistance? MOLECULAR BIOLOGY AND EVOLUTION 34(4):802-817 [doi:10.1093/molbev/msw292]28096304
2017Rinaldi F, Lithgow O, Gama-Castro S, Solano H, Lopez A, Muñiz Rascado LJ, Ishida-Gutiérrez C, Méndez-Cruz CF, Collado-Vides J (2017) Strategies towards digital and semi-automated curation in RegulonDB DATABASE-THE JOURNAL OF BIOLOGICAL DATABASES AND CURATION 2017(1):bax012- [doi:10.1093/database/bax012]28365731
2017Bustos P, Santamaría RI, Pérez-Carrascal OM, Acosta JL, Lozano L, Juárez S, Martínez-Flores I, Martínez-Romero E, Cevallos MÁ, Romero D, Dávila G, Vinuesa P, Miranda F, Ormeño E, González V (2017) Complete Genome Sequences of Three Rhizobium gallicum Symbionts Associated with Common Bean (Phaseolus vulgaris). Genome Announcements 5(11):- [doi:10.1128/genomeA.00030-17]28302777
2017Angel Vences-Guzman, Miguel, Goetting-Minesky, M. Paula, Guan, Ziqiang, Castillo-Ramirez, Santiago, America Cordoba-Castro, Luz, Lopez-Lara, Isabel M., Geiger, Otto, Sohlenkamp, Christian, Fenno, J. Christopher (2017) 1,2-Diacylglycerol choline phosphotransferase catalyzes the final step in the unique Treponema denticola phosphatidylcholine biosynthesis pathway Molecular Microbiology 103(5):896-912 [doi:10.1111/mmi.13596]28009086
2017Gamez-Reyes, Aurora, Becerra-Lobato, Noe, Augusto Ramirez-Trujillo, Jose, Martinez-Romero, Esperanza, Dunn, Michael F., Hernandez-Lucas, Ismael (2017) The Rhizobium leucaenae CFN 299 pSym plasmid contains genes expressed in free life and symbiosis, as well as two replication systems ANNALS OF MICROBIOLOGY 67(3):263-273 [doi:10.1007/s13213-017-1257-3]
2017Alatorre-Fernandez, Pamela, Mayoral-Teran, Claudia, Velazquez-Acosta, Consuelo, Franco-Rodriguez, Cecilia, Flores-Moreno, Karen, Angel Cevallos, Miguel, Lopez-Vidal, Yolanda, Volkow-Fernandez, Patricia (2017) A polyclonal outbreak of bloodstream infections by Enterococcus faecium in patients with hematologic malignancies AMERICAN JOURNAL OF INFECTION CONTROL 45(3):260-266 [doi:10.1016/j.ajic.2016.10.002]27852447
2017Vicens, Alberto, Andrade-Lopez, Karla, Cortez, Diego, Maria Gutierrez, Rosa, Trevino, Claudia L. (2017) Premammalian origin of the sperm-specific Slo3 channel FEBS OPEN BIO 7(3):382-390 [doi:10.1002/2211-5463.12186]28286733
2017Fang H, Wu Y, Yang H, Yoon M, Jiménez-Barrón LT, Mittelman D, Robison R, Wang K, Lyon GJ (2017) Whole genome sequencing of one complex pedigree illustrates challenges with genomic medicine BMC MEDICAL GENOMICS 10(1):10-10 [doi:10.1186/s12920-017-0246-5]28228131
2017Iniguez, Luis P., Hernandez, Georgina (2017) The Evolutionary Relationship between Alternative Splicing and Gene Duplication Frontiers in Genetics 8():14- [doi:10.3389/fgene.2017.00014]28261262
2017Contreras-Moreira B, Cantalapiedra CP, García-Pereira MJ, Gordon SP, Vogel JP, Igartua E, Casas AM, Vinuesa P (2017) Analysis of Plant Pan-Genomes and Transcriptomes with GET_HOMOLOGUES-EST, a Clustering Solution for Sequences of the Same Species Frontiers In Plant Science 8():184-184 [doi:10.3389/fpls.2017.00184]28261241
2017Garcia-Gomez, Elizabeth, Jaso-Vera, Marcos E., Juarez-Verdayes, Marco A., Alcantar-Curiel, Maria D., Zenteno, Juan C., Betanzos-Cabrera, Gabriel, Peralta, Humberto, Rodriguez-Martinez, Sandra, Cancino-Diaz, Mario E., Jan-Roblero, Janet, Cancino-Diaz, Juan C. (2017) The (95 Delta)G mutation in the 5'untranslated region of the norA gene increases efflux activity in Staphylococcus epidermidis isolates Microbial Pathogenesis 103():139-148 [doi:10.1016/j.micpath.2016.12.021]28017900
2017Utrilla, Jose (2017) Evolutionary Engineering of Microorganisms to Overcome Toxicity During Lignocellulose Hydrolysates Utilization Engineering of Microorganisms for the Production of Chemicals and Biofuels from Renewable Resources ():181-200 [doi:https://doi.org/10.1007/978-3-319-51729-2_7]
2017Torres Tejerizo G, Wibberg D, Winkler A, Ormeño-Orrillo E, Martínez-Romero E, Niehaus K, Pühler A, Kalinowski J, Lagares A, Schlüter A, Pistorio M (2017) Genome Sequence of the Symbiotic Type Strain Rhizobium tibeticum CCBAU85039T. Genome Announcements 5(4):- [doi:10.1128/genomeA.01513-16]28126941
2017Gil, Jeovanis, Ramirez-Torres, Alberto, Encarnacion-Guevara, Sergio (2017) Lysine acetylation and cancer: A proteomics perspective Journal Of Proteomics 150():297-309 [doi:10.1016/j.jprot.2016.10.003]27746255
2017Keseler IM, Mackie A, Santos-Zavaleta A, Billington R, Bonavides-Martínez C, Caspi R, Fulcher C, Gama-Castro S, Kothari A, Krummenacker M, Latendresse M, Muñiz-Rascado L, Ong Q, Paley S, Peralta-Gil M, Subhraveti P, Velázquez-Ramírez DA, Weaver D, Collado-Vides J, Paulsen I, Karp PD (2017) The EcoCyc database: reflecting new knowledge about Escherichia coli K-12 Nucleic Acids Research 45(D1):543-550 [doi:10.1093/nar/gkw1003]27899573
2017Salgado-Morales R., Rivera-Gómez N., Martínez-Ocampo F., Lozano-Aguirre Beltrán L.F., Hernández-Mendoza A., Dantán-González E. (2017) Draft genome sequence of Photorhabdus luminescens HIM3 isolated from an entomopathogenic nematode in agricultural soils Genome announcements 5(35):e00745- [doi:10.1128/genomeA.00745-17]
2017Ortiz-Berrocal, Marlene, Lozano, Luis, Sanchez-Flores, Alejandro, Nava, Noreide, Hernandez, Georgina, Reddy, Pallavolu M. (2017) Expression in rice of an autoactive variant of Medicago truncatula DMI3, the Ca+2/calmodulin-dependent protein kinase from the common symbiotic pathway modifies root transcriptome and improves mycorrhizal colonization PLANT BIOTECHNOLOGY REPORTS 11(5):271-287 [doi:10.1007/s11816-017-0449-4]
2017Esposti, Mauro Degli (2017) The long story of mitochondrial DNA and respiratory complex I FRONTIERS IN BIOSCIENCE-LANDMARK 22():722-731 [doi:10.2741/4512]27814642
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2017Vargas-Lagunas, Carmen, Mora, Yolanda, Diaz, Rafael, Martinez-Batallar, Gabriel, Girard, Lourdes, Encarnacion, Sergio, Peralta, Humberto, Mora, Jaime (2017) Overproduction of Sinorhizobium meliloti ArgC (N-acetyl-gamma-glutamyl phosphate reductase) promotes growth delay and inefficient nodules Fems Microbiology Letters 364(23):fnx233- [doi:10.1093/femsle/fnx233]29121239
2017Degli Esposti, Mauro (2017) A Journey across Genomes Uncovers the Origin of Ubiquinone in Cyanobacteria Genome Biology And Evolution 9(11):3039-3053 [doi:10.1093/gbe/evx225]29106540
2017Rogel-Hernandez M.A., Guerrero G., Rincón-Molina C.I., Ruiz-Valdiviezo V.M., Cisneros-Pérez C., Castañón-Gonzalez J.H., López-López A., Martinez-Romero E., Rincón-Rosales R. (2017) Genome sequence of Acinetobacter lactucae OTEC-02, isolated from hydrocarbon contaminated soil Genome announcements 5(21):e00400-17- [doi:10.1128/genomeA.00400-17]
2017Vera-Ponce de Leon, Arturo, Ormeno-Orrillo, Ernesto, Ramirez-Puebla, Shamayim T., Rosenblueth, Monica, Esposti, Mauro Degli, Martinez-Romero, Julio, Martinez-Romero, Esperanza (2017) Candidatus Dactylopiibacterium carminicum, a Nitrogen-Fixing Symbiont of Dactylopius Cochineal Insects (Hemiptera: Coccoidea: Dactylopiidae) Genome Biology And Evolution 9(9):2237-2250 [doi:10.1093/gbe/evx156]
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2017Herrera Y., Contreras S., Hernández M., Álvarez L., Mora Y., Encarnación-Guevara S. (2017) Displacers improve the selectivity of phosphopeptide enrichment by metal oxide affinity chromatography Boletin Medico del Hospital Infantil de Mexico 74(3):200-207 [doi:10.1016/j.bmhimx.2017.03.008]29382487
2017Cossío-Bayúgar R., Miranda-Miranda E., Arreguín-Pérez C.A., Lozano L., Peréz de la Rosa D., Rocha-Martínez M.K., Bravo-Díaz M.A., Sachman-Ruiz B. (2017) Draft genome sequence of enterococcus casseliflavus PAVET15 obtained from the oviduct infection of the cattle tick (Rhipicephalus microplus) in jiutepec, morelos, Mexico Genome announcements 5(16):e00196-17- [doi:10.1128/genomeA.00196-17]
2017de Lajudie P., Martinez-Romero E. (2017) International committee on systematics of prokaryotes subcommittee on the taxonomy of Agrobacterium and Rhizobium minutes of the meeting, 7 september 2014, Tenerife, Spain International Journal Of Systematic And Evolutionary Microbiology 67(2):516-520 [doi:10.1099/ijsem.0.001597]
2017Sandoval-Motta S., Aldana M., Martínez-Romero E., Frank A. (2017) The human microbiome and the missing heritability problem Frontiers in Genetics 8(JUN):80- [doi:10.3389/fgene.2017.00080]
2017Salgado-Morales R., Rivera-Gómez N., Lozano-Aguirre Beltrán L.F., Hernández-Mendoza A., Dantán-González E. (2017) Draft genome sequence of a Pseudomonas aeruginosa NA04 bacterium isolated from an entomopathogenic nematode Genome announcements 5(36):e00746-17- [doi:10.1128/genomeA.00746-17]
2017Encarnación-Guevara S. (2017) The dawn and the first twenty-five years of proteomics in Mexico: a personal chronicle Boletin Medico del Hospital Infantil de Mexico 74(3):208-211 [doi:10.1016/j.bmhimx.2017.03.006]29382488
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2017Masforrol, Yordanka, Gil, Jeovanis, Garcia, Darien, Noda, Jesus, Ramos, Yassel, Betancourt, Lazaro, Guirola, Osmany, Gonzalez, Sonia, Acevedo, Boris, Besada, Vladimir, Reyes, Osvaldo, Javier Gonzalez, Luis (2017) A deeper mining on the protein composition of VA-MENGOC-BC (R): An OMV-based vaccine against N-meningitidis serogroup B and C HUMAN VACCINES & IMMUNOTHERAPEUTICS 13(11):2548-2560 [doi:10.1080/21645515.2017.1361577]29083947
2017Alfredo Banuelos-Vazquez, Luis, Torres Tejerizo, Gonzalo, Brom, Susana (2017) Regulation of conjugative transfer of plasmids and integrative conjugative elements Plasmid 91():82-89 [doi:10.1016/j.plasmid.2017.04.002]28438469
2017Santillan, Orlando, Ramirez-Romero, Miguel A., Davila, Guillermo (2017) CAPRRESI: Chimera Assembly by Plasmid Recovery and Restriction Enzyme Site Insertion JOVE-JOURNAL OF VISUALIZED EXPERIMENTS (124):e55526- [doi:10.3791/55526]28671650
2017Perez-Morales, Deyanira, Banda, Maria M., Elizabeth Chau, N. Y., Salgado, Heladia, Martinez-Flores, Irma, Antonio Ibarra, J., Ilyas, Bushra, Coombes, Brian K., Bustamante, Victor H. (2017) The transcriptional regulator SsrB is involved in a molecular switch controlling virulence lifestyles of Salmonella PLOS PATHOGENS 13(7):e1006497- [doi:10.1371/journal.ppat.1006497]28704543
2017Wu, Zhiqiang, Sloan, Daniel B., Brown, Colin W., Rosenblueth, Monica, Palmer, Jeffrey D., Ong, Han Chuan (2017) Mitochondrial Retroprocessing Promoted Functional Transfers of rpl5 to the Nucleus in Grasses MOLECULAR BIOLOGY AND EVOLUTION 34(9):2340-2354 [doi:10.1093/molbev/msx170]28541477
2016Gruner, Hannah, Cortes-Lopez, Mariela, Cooper, Daphne A., Bauer, Matthew, Miura, Pedro (2016) CircRNA accumulation in the aging mouse brain SCIENTIFIC REPORTS 6():38907- [doi:10.1038/srep38907]27958329
2016Fang H, Bergmann EA, Arora K, Vacic V, Zody MC, Iossifov I, O'Rawe JA, Wu Y, Jimenez Barron LT, Rosenbaum J, Ronemus M, Lee YH, Wang Z, Dikoglu E, Jobanputra V, Lyon GJ, Wigler M, Schatz MC, Narzisi G (2016) Indel variant analysis of short-read sequencing data with Scalpel Nature protocols 11(12):2529-2548 [doi:10.1038/nprot.2016.150]27854363
2016Mendez-Cruz, Carlos-Francisco, Medina-Urrea, Alfonso, Sierra, Gerardo (2016) Unsupervised morphological segmentation based on affixality measurements PATTERN RECOGNITION LETTERS 84():127-133 [doi:10.1016/j.patrec.2016.09.001]
2016Hossain, Md Shakhawat, Shrestha, Arina, Zhong, Sihui, Miri, Mandana, Austin, Ryan S., Sato, Shusei, Ross, Loretta, Huebert, Terry, Tromas, Alexandre, Torres-Jerez, Ivone, Tang, Yuhong, Udvardi, Michael, Murray, Jeremy D., Szczyglowski, Krzysztof (2016) Lotus japonicus NF-YA1 Plays an Essential Role During Nodule Differentiation and Targets Members of the SHI/STY Gene Family Molecular Plant-Microbe Interactions 29(12):950-964 [doi:10.1094/MPMI-10-16-0206-R]27929718
2016Martínez-Flores I, Pérez-Morales D, Sánchez-Pérez M, Paredes CC, Collado-Vides J, Salgado H, Bustamante VH (2016) In silico clustering of Salmonella global gene expression data reveals novel genes co-regulated with the SPI-1 virulence genes through HilD SCIENTIFIC REPORTS 6():37858-37858 [doi:10.1038/srep37858]27886269
2016Guillermo Jimenez-Cortes, Jesus, Canales-Lazcano, Jorge, Lara-Reyes, Nancy, Rosenblueth, Monica, Martinez-Romero, Esperanza, Contreras-Garduno, Jorge (2016) Microbiota from Rhabditis regina may alter nematode entomopathogenicity Parasitology Research 115(11):4153-4165 [doi:10.1007/s00436-016-5190-3]27492201
2016Reyes-Perez, Agustin, del Carmen Vargas, Maria, Hernandez, Magdalena, Aguirre-von-Wobeser, Eneas, Perez-Rueda, Ernesto, Encarnacion, Sergio (2016) Transcriptomic analysis of the process of biofilm formation in Rhizobium etli CFN42 Archives Of Microbiology 198(9):847-860 [doi:10.1007/s00203-016-1241-5]27226009
2016Torres Tejerizo, Gonzalo, Antonio Rogel, Marco, Ormeno-Orrillo, Ernesto, Julia Althabegoiti, Maria, Fernanda Nilsson, Juliet, Niehaus, Karsten, Schlueter, Andreas, Puehler, Alfred, Florencia Del Papa, Maria, Lagares, Antonio, Martinez-Romero, Esperanza, Pistorio, Mariano (2016) Rhizobium favelukesii sp nov., isolated from the root nodules of alfalfa (Medicago sativa L) International Journal Of Systematic And Evolutionary Microbiology 66(11):4451-4457 [doi:10.1099/ijsem.0.001373]27499008
2016Ramirez, Mario, Iniguez, Luis P., Guerrero, Gabriela, Sparvoli, Francesca, Hernandez, Georgina (2016) Rhizobium etli bacteroids engineered for Vitreoscilla hemoglobin expression alleviate oxidative stress in common bean nodules that reprogramme global gene expression PLANT BIOTECHNOLOGY REPORTS 10(6):463-474 [doi:10.1007/s11816-016-0422-7]
2016Utrilla, Jose, Vargas-Tah, Alejandra, Trujillo-Martinez, Berenice, Gosset, Guillermo, Martinez, Alfredo (2016) Production of D-lactate from sugarcane bagasse and corn stover hydrolysates using metabolic engineered Escherichia coli strains BIORESOURCE TECHNOLOGY 220():208-214 [doi:10.1016/j.biortech.2016.08.067]27573474
2016Aguilar A, Peralta H, Mora Y, Díaz R, Vargas-Lagunas C, Girard L, Mora J (2016) Genomic Comparison of Agrobacterium pusense Strains Isolated from Bean Nodules Frontiers in Microbiology 7():1720-1720 [doi:10.3389/fmicb.2016.01720]27833604
2016Ramírez-Puebla ST, Ormeño-Orrillo E, Vera-Ponce de León A, Lozano L, Sanchez-Flores A, Rosenblueth M, Martínez-Romero E (2016) Genomes of Candidatus Wolbachia bourtzisii wDacA and Candidatus Wolbachia pipientis wDacB from the Cochineal Insect Dactylopius coccus (Hemiptera: Dactylopiidae) G3-GENES GENOMES GENETICS 6(10):3343-3349 [doi:10.1534/g3.116.031237]27543297
2016Alvarado-Delgado A, Perales Ortiz G, Tello-López ÁT, Encarnación S, Conde R, Martínez-Batallar ÁG, Moran-Francia K, Lanz-Mendoza H (2016) Infection with Plasmodium berghei ookinetes alters protein expression in the brain of Anopheles albimanus mosquitoes PARASITES & VECTORS 9(1):542-542 [doi:10.1186/s13071-016-1830-9]27724938
2016Joseph, Sandeep J., Cox, Daniel, Wolff, Bernard, Morrison, Shatavia S., Kozak-Muiznieks, Natalia A., Frace, Michael, Didelot, Xavier, Castillo-Ramirez, Santiago, Winchell, Jonas, Read, Timothy D., Dean, Deborah (2016) Dynamics of genome change among Legionella species SCIENTIFIC REPORTS 6():- [doi:10.1038/srep33442]27633769
2016Becker, Noemie S., Margos, Gabriele, Blum, Helmut, Krebs, Stefan, Graf, Alexander, Lane, Robert S., Castillo-Ramirez, Santiago, Sing, Andreas, Fingerle, Volker (2016) Recurrent evolution of host and vector association in bacteria of the Borrelia burgdorferi sensu lato species complex Bmc Genomics 17(1):734-734 [doi:10.1186/s12864-016-3016-4]27632983
2016Peralta H, Aguilar A, Díaz R, Mora Y, Martínez-Batallar G, Salazar E, Vargas-Lagunas C, Martínez E, Encarnación S, Girard L, Mora J (2016) Genomic studies of nitrogen-fixing rhizobial strains from Phaseolus vulgaris seeds and nodules Bmc Genomics 17():711-711 [doi:10.1186/s12864-016-3053-z]27601031
2016Wang, Qinghua, Abdul, Shabbir S., Almeida, Lara, Ananiadou, Sophia, Balderas-Martinez, Yalbi I., Batista-Navarro, Riza, Campos, David, Chilton, Lucy, Chou, Hui-Jou, Contreras, Gabriela, Cooper, Laurel, Dai, Hong-Jie, Ferrell, Barbra, Fluck, Juliane, Gama-Castro, Socorro, George, Nancy, Gkoutos, Georgios, Irin, Afroza K., Jensen, Lars J., Jimenez, Silvia, Jue, Toni R., Keseler, Ingrid, Madan, Sumit, Matos, Sergio, McQuilton, Peter, Milacic, Marija, Mort, Matthew, Natarajan, Jeyakumar, Pafilis, Evangelos, Pereira, Emiliano, Rao, Shruti, Rinaldi, Fabio, Rothfels, Karen, Salgado, David, Silva, Raquel M., Singh, Onkar, Stefancsik, Raymund, Su, Chu-Hsien, Subramani, Suresh, Tadepally, Hamsa D., Tsaprouni, Loukia, Vasilevsky, Nicole, Wang, Xiaodong, Chatr-Aryamontri, Andrew, Laulederkind, Stanley J. F., Matis-Mitchell, Sherri, McEntyre, Johanna, Orchard, Sandra, Pundir, Sangya, Rodriguez-Esteban, Raul, Van Auken, Kimberly, Lu, Zhiyong, Schaeffer, Mary, Wu, Cathy H., Hirschman, Lynette, Arighi, Cecilia N. (2016) Overview of the interactive task in BioCreative V DATABASE-THE JOURNAL OF BIOLOGICAL DATABASES AND CURATION ():baw119- [doi:10.1093/database/baw119]27589961
2016Alfonso-Gordillo, Guadalupe, Cristiani-Urbina, Eliseo, Mateo Flores-Ortiz, Cesar, Peralta, Humberto, Carlos Cancino-Diaz, Juan, Antonio Cruz-Maya, Juan, Jan-Roblero, Janet (2016) Stenotrophomonas maltophilia isolated from gasoline-contaminated soil is capable of degrading methyl tert-butyl ether ELECTRONIC JOURNAL OF BIOTECHNOLOGY 23():12-20 [doi:10.1016/j.ejbt.2016.06.006]
2016Perez Carrascal, Olga M., VanInsberghe, David, Juarez, Soledad, Polz, Martin F., Vinuesa, Pablo, Gonzalez, Victor (2016) Population genomics of the symbiotic plasmids of sympatric nitrogen-fixing Rhizobium species associated with Phaseolus vulgaris Environmental Microbiology 18(8):2660-2676 [doi:10.1111/1462-2920.13415]27312778
2016Miranda-Sanchez, Fabiola, Rivera, Javier, Vinuesa, Pablo (2016) Diversity patterns of Rhizobiaceae communities inhabiting soils, root surfaces and nodules reveal a strong selection of rhizobial partners by legumes Environmental Microbiology 18(8):2375-2391 [doi:10.1111/1462-2920.13061]26395550
2016Wang, Mingxun, Carver, Jeremy J., Phelan, Vanessa V., Sanchez, Laura M., Garg, Neha, Peng, Yao, Don Duy Nguyen, Watrous, Jeramie, Kapono, Clifford A., Luzzatto-Knaan, Tal, Porto, Carla, Bouslimani, Amina, Melnik, Alexey V., Meehan, Michael J., Liu, Wei -Ting, Criisemann, Max, Boudreau, Paul D., Esquenazi, Eduardo, Sandoval-Calderon, Mario, Kersten, Roland D., Pace, Laura A., Quinn, Robert A., Duncan, Katherine R., Hsu, Cheng-Chih, Floros, Dimitrios J., Gavilan, Ronnie G., Kleigrewe, Karin, Northen, Trent, Dutton, Rachel J., Parrot, Delphine, Carlson, Erin E., Aigle, Bertrand, Michelsen, Charlotte F., Jelsbak, Lars, Sohlenkamp, Christian, Pevzner, Pavel, Edlund, Anna, McLean, Jeffrey, Piel, Jorn, Murphy, Brian T., Gerwick, Lena, Liaw, Chih-Chuang, Yang, Yu-Liang, Humpf, Hans-Ulrich, Maansson, Maria, Keyzers, Robert A., Sims, Amy C., Johnson, Andrew R., Sidebottom, Ashley M., Sedio, Brian E., Klitgaard, Andreas, Larson, Charles B., Boya P, Cristopher A., Torres-Mendoza, Daniel, Gonzalez, David J., Silva, Denise B., Marques, Lucas M., Demarque, Daniel P., Pociute, Egle, O'Neill, Ellis C., Briand, Enora, Helfrich, Eric J. N., Granatosky, Eve A., Glukhov, Evgenia, Ryffel, Florian, Houson, Hailey, Mohimani, Hosein, Kharbush, Jenan J., Zeng, Yi, Vorholt, Julia A., Kurita, Kenji L., Charusanti, Pep, McPhail, Kerry L., Nielsen, Kristian Fog, Vuong, Lisa, Elfeki, Maryam, Traxler, Matthew F., Engene, Niclas, Koyama, Nobuhiro, Vining, Oliver B., Baric, Ralph, Silva, Ricardo R., Mascuch, Samantha J., Tomasi, Sophie, Jenkins, Stefan, Macherla, Venkat, Hoffman, Thomas, Agarwal, Vinayak, Williams, Philip G., Dai, Jingqui, Neupane, Ram, Gurr, Joshua, Rodriguez, Andres M. C., Lamsa, Anne, Zhang, Chen, Dorrestein, Kathleen, Duggan, Brendan M., Almaliti, Jehad, Allard, Pierre-Marie, Phapale, Prasad, Nothias, Louis-Felix, Alexandrovr, Theodore, Litaudon, Marc, Wolfender, Jean-Luc, Kyle, Jennifer E., Metz, Thomas O., Peryea, Tyler, Dac-Trung Nguyen, VanLeer, Danielle, Shinn, Paul, Jadhav, Ajit, Muller, Rolf, Waters, Katrina M., Shi, Wenyuan, Liu, Xueting, Zhang, Lixin, Knight, Rob, Jensen, Paul R., Palsson, Bernhard O., Pogliano, Kit, Linington, Roger G., Gutierrez, Marcelino, Lopes, Norberto P., Gerwick, William H., Moore, Bradley S., Dorrestein, Pieter C., Bandeira, Nuno (2016) Sharing and community curation of mass spectrometry data with Global Natural Products Social Molecular Networking Nature Biotechnology 34(8):828-837 [doi:10.1038/nbt.3597]27504778
2016Degli Esposti M, Cortez D, Lozano L, Rasmussen S, Nielsen HB, Martinez Romero E (2016) Alpha proteobacterial ancestry of the [Fe-Fe]-hydrogenases in anaerobic eukaryotes Biology Direct 11():34-34 [doi:10.1186/s13062-016-0136-3]27473689
2016Santillán O, Ramírez-Romero MA, Lozano L, Checa A, Encarnación SM, Dávila G (2016) Region 4 of Rhizobium etli Primary Sigma Factor (SigA) Confers Transcriptional Laxity in Escherichia coli Frontiers in Microbiology 7():1078-1078 [doi:10.3389/fmicb.2016.01078]27468278
2016Garza-Ramos U, Silva-Sánchez J, Catalán-Nájera J, Barrios H, Rodríguez-Medina N, Garza-González E, Cevallos MA, Lozano L (2016) Draft Genome Sequence of a Hypermucoviscous Extended-Spectrum-ß-Lactamase-Producing Klebsiella quasipneumoniae subsp. similipneumoniae Clinical Isolate. Genome Announcements 4(4):- [doi:10.1128/genomeA.00475-16]27389261
2016Degli Esposti M (2016) Late Mitochondrial Acquisition, Really? Genome Biology And Evolution 8(6):2031-2035 [doi:10.1093/gbe/evw130]27289097
2016Yadira Lopez-Chavez, Mariana, Guillen-Navarro, Karina, Bertolini, Vincenzo, Encarnacion, Sergio, Hernandez-Ortiz, Magdalena, Sanchez-Moreno, Irene, Damon, Anne (2016) Proteomic and morphometric study of the in vitro interaction between Oncidium sphacelatum Lindl. (Orchidaceae) and Thanatephorus sp RG26 (Ceratobasidiaceae) Mycorrhiza 26(5):353-365 [doi:10.1007/s00572-015-0676-x]26732875
2016Hernández-Tamayo, R., Torres-Tejerizo, G., Brom, S., Romero, D. (2016) Site-specific bacterial chromosome engineering mediated by IntA integrase from Rhizobium etli Bmc Microbiology 16(1):133-133 [doi:10.1186/s12866-016-0755-y]27357704
2016Vera-Ponce de León A, Sanchez-Flores A, Rosenblueth M, Martínez-Romero E (2016) Fungal Community Associated with Dactylopius (Hemiptera: Coccoidea: Dactylopiidae) and Its Role in Uric Acid Metabolism Frontiers in Microbiology 7():954-954 [doi:10.3389/fmicb.2016.00954]27446001
2016Diener C, Muñoz-Gonzalez F, Encarnación S, Resendis-Antonio O (2016) The space of enzyme regulation in HeLa cells can be inferred from its intracellular metabolome SCIENTIFIC REPORTS 6():28415-28415 [doi:10.1038/srep28415]27335086
2016Formey D, Martín-Rodríguez JÁ, Leija A, Santana O, Quinto C, Cárdenas L, Hernández G (2016) Regulation of Small RNAs and Corresponding Targets in Nod Factor-Induced Phaseolus vulgaris Root Hair Cells International Journal Of Molecular Sciences 17(6):887- [doi:10.3390/ijms17060887]27271618
2016Augusto Ramirez-Trujillo, Jose, Dunn, Michael F., Suarez-Rodriguez, Ramon, Hernandez-Lucas, Ismael (2016) The Sinorhizobium meliloti glyoxylate cycle enzyme isocitrate lyase (AceA) is required for the utilization of poly-beta-hydroxybutyrate during carbon starvation ANNALS OF MICROBIOLOGY 66(2):921-924 [doi:10.1007/s13213-015-1131-0]
2016O'Brien EJ, Utrilla J, Palsson BO (2016) Quantification and Classification of E-coli Proteome Utilization and Unused Protein Costs across Environments Plos Computational Biology 12(6):e1004998- [doi:10.1371/journal.pcbi.1004998]27351952
2016Hernandez-Rodriguez, Lester, Maria Perez-Castro, Juana, Garcia-Garcia, Gabriel, Ramos-Gonzalez, Pedro Luis, Zamora-Rodriguez, Victoria, Ferriol-Marchena, Xenia, Pena-Barzaga, Ines, Batista-Le Riverend, Lochy (2016) Citrus leaf blotch virus in Cuba: first report and partial molecular characterization TROPICAL PLANT PATHOLOGY 41(3):147-154 [doi:10.1007/s40858-016-0078-4]
2016Esposti, Mauro Degli, Romero, Esperanza Martinez (2016) A survey of the energy metabolism of nodulating symbionts reveals a new form of respiratory complex I Fems Microbiology Ecology 92(6):UNSP fiw084- [doi:10.1093/femsec/fiw084]27106049
2016Reyes-Gonzalez, Alma, Talbi, Chouhra, Rodriguez, Susana, Rivera, Patricia, Zamorano-Sanchez, David, Girard, Lourdes (2016) Expanding the regulatory network that controls nitrogen fixation in Sinorhizobium meliloti: elucidating the role of the two-component system hFixL-FxkR MICROBIOLOGY-SGM 162(6):979-988 [doi:10.1099/mic.0.000284]27010660
2016Ibarra-Arellano MA, Campos-González AI, Treviño-Quintanilla LG, Tauch A, Freyre-González JA (2016) Abasy Atlas: a comprehensive inventory of systems, global network properties and systems-level elements across bacteria DATABASE-THE JOURNAL OF BIOLOGICAL DATABASES AND CURATION 2016():baw089- [doi:10.1093/database/baw089]27242034
2016Aanensen, David M., Feil, Edward J., Holden, Matthew T. G., Dordel, Janina, Yeats, Corin A., Fedosejev, Artemij, Goater, Richard, Castillo-Ramirez, Santiago, Corander, Jukka, Colijn, Caroline, Chlebowicz, Monika A., Schouls, Leo, Heck, Max, Pluister, Gerlinde, Ruimy, Raymond, Kahlmeter, Gunnar, Ahman, Jenny, Matuschek, Erika, Friedrich, Alexander W., Parkhill, Julian, Bentley, Stephen D., Spratt, Brian G., Grundmann, Hajo, ESCMID Study Grp Mol Epidemiologic, European Staphylococcal Ref Lab Wo (2016) Whole-Genome Sequencing for Routine Pathogen Surveillance in Public Health: a Population Snapshot of Invasive Staphylococcus aureus in Europe Mbio 7(3):e00444-16- [doi:10.1128/mBio.00444-16]27150362
2016Mateos M, Winter L, Winter C, Higareda-Alvear VM, Martinez-Romero E, Xie J (2016) Independent origins of resistance or susceptibility of parasitic wasps to a defensive symbiont ECOLOGY AND EVOLUTION 6(9):2679-2687 [doi:10.1002/ece3.2085]27066241
2016Bolanos, Luis M., Rosenblueth, Monica, Castillo-Ramirez, Santiago, Figuier-Huttin, Gilles, Martinez-Romero, Esperanza (2016) Species-specific diversity of novel bacterial lineages and differential abundance of predicted pathways for toxic compound degradation in scorpion gut microbiota Environmental Microbiology 18(5):1364-1378 [doi:10.1111/1462-2920.12939]26058415
2016Ramirez-Puebla, Shamayim T., Servin-Garciduenas, Luis E., Ormeno-Orrillo, Ernesto, Vera-Ponce de Leon, Arturo, Rosenblueth, Monica, Delaye, Luis, Martinez, Julio, Martinez-Romero, Esperanza (2016) A response to Lindsey et al. "Wolbachia pipientis should not be split into multiple species: A response to Ramirez-Puebla et al." Systematic And Applied Microbiology 39(3):223-225 [doi:10.1016/j.syapm.2016.03.004]27033416
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2013Abdel-Haliem, M.E.F., Sakr, A.A., Ali, M.F., Ghaly, M.F., Sohlenkamp, Christian (2013) Characterization of Streptomyces isolates causing colour changes of mural paintings in ancient Egyptian tombs Microbiological Research 168(7):428-437 [doi:10.1016/j.micres.2013.02.004]23507492
2013Sohlenkamp, C, Raetz, C.R.H., Ingram, B.O. (2013) The calcium-stimulated lipid A 3-O deacylase from Rhizobium etli is not essential for plant nodulation Biochimica Et Biophysica Acta-Molecular And Cell Biology Of Lipids 1831(7):1250-1259 [doi:10.1016/j.bbalip.2013.04.002]23583844
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2013Morales-Jiménez, J., de León, A.V.P., García-Domínguez, A., Martínez Romero, María Esperanza, Zuñiga, G., Hernández-Rodríguez, C. (2013) Nitrogen-Fixing and Uricolytic Bacteria Associated with the Gut of Dendroctonus rhizophagus and Dendroctonus valens (Curculionidae: Scolytinae) Microbial Ecology 66(1):200-210 [doi:10.1007/s00248-013-0206-3]23525792
2013O'Rourke, J.A., Iñiguez Rabago, Luis Pedro, Bucciarelli, B., Roessler, J., Schmutz, J., McClean, P.E., Jackson, S.A., Hernández Delgado, Georgina, Graham, M.A., Stupar, R.M., Vance, C.P. (2013) A re-sequencing based assessment of genomic heterogeneity and fast neutron-induced deletions in a common bean cultivar Frontiers In Plant Science 4():210-210 [doi:10.3389/fpls.2013.00210]23805147
2013Moreno, A., Isern, D., Fuentes, ACL (2013) Ontology-based information extraction of regulatory networks from scientific articles with case studies for Escherichia coli EXPERT SYSTEMS WITH APPLICATIONS 40(8):3266-3281 [doi:10.1016/j.eswa.2012.12.090]
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2013Ormeño Orrillo, Ernesto Aldo, Servín Garcidueñas, Luis Eduardo, Imperial, J., Rey, L., Ruíz-Argueso, T., Martínez Romero, María Esperanza (2013) Phylogenetic evidence of the transfer of nodZ and nolL genes from Bradyrhizobium to other rhizobia Molecular Phylogenetics And Evolution 67(3):626-630 [doi:10.1016/j.ympev.2013.03.003]23499616
2013Ormeño Orrillo, Ernesto Aldo, Martínez Romero, María Esperanza (2013) Phenotypic tests in Rhizobium species description: An opinion and (a sympatric speciation) hypothesis Systematic And Applied Microbiology 36(3):145-147 [doi:10.1016/j.syapm.2012.11.009]23415482
2013Couillerot, O., Ramírez Trujillo, José Augusto, Walker, V., von Felten, A., Jansa, J., Maurhofer, M., Defago, G., Prigent-Combaret, C., Comte, G., Caballero Mellado, José de Jesús, Moenne-Loccoz, Y. (2013) Comparison of prominent Azospirillum strains in Azospirillum-Pseudomonas-Glomus consortia for promotion of maize growth Applied Microbiology And Biotechnology 97(10):4639-4649 [doi:10.1007/s00253-012-4249-z]22805783
2013Tsai, I.J., Zarowiecki, M., Holroyd, N., Garciarrubio, A., Sánchez-Flores, A., Brooks, K.L., Tracey, A., Bobes, R.J., Fragoso, G., Sciutto, E., Aslett, M., Beasley, H., Bennett, H.M., Cai, J., Camicia, F., Clark, R., Cucher, M., De Silva, N., Day, T.A., Deplazes, P., Estrada, K., Fernández, C., Holland, P.W., Hou, J., Hu, S., Huckvale, T., Hung, S.S., Kamenetzky, L., Keane, J.A., Kiss, F., Koziol, U., Lambert, O., Liu, K., Luo, X., Luo, Y., Macchiaroli, N., Nichol, S., Paps, J., Parkinson, J., Pouchkina-Stantcheva, N., Riddiford, N., Rosenzvit, M., Salinas, G., Wasmuth, J.D., Zamanian, M., Zheng, Y., Garciarrubio, A., Bobes, R.J., Fragoso, G., Sánchez-Flores, A., Estrada, K., Cevallos Gaos, Miguel Ángel Carlos, Morett, E., González Zúñiga, Víctor Manuel, Portillo, T., Ochoa-Leyva, A., José, M.V., Sciutto, E., Landa, A., Jiménez, L., Valdés, V., Carrero, J.C., Larralde, C., Morales-Montor, J., Limón-Lason, J., Soberón, X., Laclette, J.P., Cai, X., Soberón, X., Olson, P.D., Laclette, J.P., Brehm, K., Berriman, M. (2013) The genomes of four tapeworm species reveal adaptations to parasitism Nature 496(7443):57-63 [doi:10.1038/nature12031]23485966
2013Ramírez Yáñez, Mario, Flores-Pacheco, G., Reyes, J.L., Álvarez, A.L., Drevon, J.J., Girard Cuesy, María de Lourdes, Hernández Delgado, Georgina (2013) Two Common Bean Genotypes with Contrasting Response to Phosphorus Deficiency Show Variations in the microRNA 399-Mediated PvPHO2 Regulation within the PvPHR1 Signaling Pathway International Journal Of Molecular Sciences 14(4):8328-8344 [doi:10.3390/ijms14048328]23591845
2013Geiger, O, Lopez-Lara, IM, Sohlenkamp, C (2013) Phosphatidylcholine biosynthesis and function in bacteria Biochimica Et Biophysica Acta-Molecular And Cell Biology Of Lipids 1831(3, SI):503-513 [doi:10.1016/j.bbalip.2012.08.009]22922101
2013Vences Guzmán, Miguel Ángel, Guan, Z.Q., Bermúdez Barrientos, José Roberto, Geiger, Otto, Sohlenkamp, Christian (2013) Agrobacteria lacking ornithine lipids induce more rapid tumour formation Environmental Microbiology 15(3, SI):895-906 [doi:10.1111/j.1462-2920.2012.02867.x]22958119
2013Servín Garcidueñas, Luis Eduardo, Peng X., Garrett R.A., Martínez Romero, María Esperanza (2013) Genome sequence of a novel archaeal fusellovirus assembled from the metagenome of a Mexican hot spring Genome announcements 1(2):e00164-13- [doi:10.1128/genomeA.00164-13]23618716
2013Aparicio Fabre, Rosaura, Guillén, G., Loredo, M., Arellano García, José de Jesús, Valdes López, Oswaldo, Ramírez Yáñez, Mario, Iñiguez Rabago, Luis Pedro, Panzeri, D., Castiglioni, B., Cremonesi, P., Strozzi, F., Stella, A., Girard Cuesy, María de Lourdes, Sparvoli, F., Hernández Delgado, Georgina (2013) Common bean (Phaseolus vulgaris L.) PvTIFY orchestrates global changes in transcript profile response to jasmonate and phosphorus deficiency Bmc Plant Biology 13():26-26 [doi:10.1186/1471-2229-13-26]23402340
2013López López, Aline, Negrete-Yankelevich, S., Rogel Hernández, Marco Antonio, Ormeño Orrillo, Ernesto Aldo, Martínez Romero, Julio César, Martínez Romero, María Esperanza (2013) Native bradyrhizobia from Los Tuxtlas in Mexico are symbionts of Phaseolus lunatus (Lima bean) Systematic And Applied Microbiology 36(1):33-38 [doi:10.1016/j.syapm.2012.10.006]23280323
2013Weiss, V., Medina-Rivera, A, Huerta, AM, Santos-Zavaleta, A, Salgado, H, Morett, E., Collado-Vides, J (2013) Evidence classification of high-throughput protocols and confidence integration in RegulonDB DATABASE-THE JOURNAL OF BIOLOGICAL DATABASES AND CURATION 2013():bas059- [doi:10.1093/database/bas059]23327937
2013Servín Garcidueñas, Luis Eduardo, Peng X., Garrett R.A., Martínez Romero, María Esperanza (2013) Genome sequence of a novel archaeal rudivirus recovered from a Mexican hot spring Genome announcements 1(1):e00040-12- [doi:10.1128/genomeA.00040-12]23405288
2013Yessica, G.P., Alejandro, A., Ronald, F.C., José, A.J., Esperanza, MR, Samuel, C.S.J., Remedios, M.L.M., Ormeño Orrillo, Ernesto Aldo (2013) Tolerance, growth and degradation of phenanthrene and benzo[a]pyrene by Rhizobium tropici CIAT 899 in liquid culture medium APPLIED SOIL ECOLOGY 63():105-111 [doi:10.1016/j.apsoil.2012.09.010]
2013Palacios de la Lama, Rafael, Flores López, Margarita, Palacios Flores, Kim (2013) DNA AMPLIFICATION In vivo Brenners Encyclopedia of Genetics 2():341-343
2013Servín Garcidueñas, Luis Eduardo, Garrett R.A., Amils R., Martínez Romero, María Esperanza (2013) Genome sequence of the acidophilic bacterium Acidocella sp. strain MX-AZ02 Genome announcements 1(1):e00041-12- [doi:10.1128/genomeA.00041-12]23405365
2013Reddy, Pallavolu Maheswara, Altúzar Molina, Alma Rosa, Ortíz Berrocal, Marlene, Medina-Andrés, R., López Sámano, M., Martínez Aguilar, Lourdes, Velázquez Hernández, M.L. (2013) Predisposition and Redesigning of Genetic Networks of Rice for Accommodating Nitrogen-Fixing Rhizobial Symbiosis Muralidharan K and Siddiq EA ():245-257
2013Palacios de la Lama, Rafael, Palacios Flores, Kim, Flores López, Margarita (2013) REARRANGEMENTS Brenners Encyclopedia of Genetics 6():44-46
2013Pérez Segura, Gabriela, Pérez Oseguera, María de los Angeles, Cevallos Gaos, Miguel Ángel Carlos (2013) The repAC replication system of the Rhizobium leguminosarum pRL7 plasmid is functional: Implications regarding the origin and evolution of repABC plasmids Plasmid 69(1):49-57 [doi:10.1016/j.plasmid.2012.08.003]22975386
2013Frausto-Solis, Juan, Sanchez-Perez, Mishael, Linan-Garcia, Ernesto, Paulo Sanchez-Hernandez, Juan, Ramachandran, Manoj (2013) Cluster Perturbation Simulated Annealing for Protein Folding Problem JOURNAL OF UNIVERSAL COMPUTER SCIENCE 19(15):2207-2223
2013Gutiérrez-Román, M. I., Dunn, Michael Frederick, Tinoco-Valencia, F., Holguín-Meléndez, K., Guillen Navarro, Griselda Karina, Huerta-Palacios, G. (2013) Antifungal activity of chitinases (ChiA, ChiC and ChiB) produced by Serratia marcescens CFFSUR-B2 against Mycosphaerella fijiensis causal agent of black sigatoka in banana (Musa spp.) Acta Phytopathol 43():96-
2013de Luna,L. A., León, P., Encarnación Guevara, Sergio Manuel, Guevara-García, A. A. (2013) Chloroplast omics Barh Delmya ():-
2013Galindo Fentanes, E., Sánchez Castillo, J., Calva Mercado, E., Cuevas García, S., Davis Martínez, O., Larralde Ridaura, H., Iturriaga de la Fuente, G., Hernández Delgado, Georgina (2013) La Ciencia desde Morelos para el Mundo Tomo III: Química, Física y Matemáticas La Unión de Morelos ():-
2013Navarro-Noya, Y.E., Martínez Romero, María Esperanza, Hernández-Rodríguez, C. (2013) Potential plant-growth-promoting and nitrogen-fixing bacteria associated with pioneer plants growing on mine tailings Molecular Microbial Ecology of the Rhizosphere 2():1003-1011
2013López Guerrero, Martha Guadalupe, Ramírez Romero, Miguel Ángel, Martínez Romero, María Esperanza (2013) Rhizobial genetic repertoire to inhabit legume and nonlegume rhizospheres Molecular Microbial Ecology of the Rhizosphere 1():495-500
2013Ormeño Orrillo, Ernesto Aldo, Hungria, M., Martínez Romero, María Esperanza (2013) The Prokaryotes?Prokaryotic Physiology and Biochemistry Capítulo 11 Dinitrogen fixing prokaryotes ():-
2013Martínez Romero, María Esperanza (2013) Los Biofertilizantes y su uso en la Agricultura. SAGARPA-COFUPRO-UNAM Manual teórico-práctico ():47-
2013Ramírez Puebla, Shamayim Tabita, Servín Garcidueñas, Luis Eduardo, Jiménez Marín, Leticia Berenice, Bolaños Avellaneda, Luis Manuel, Rosenblueth Laguette, Mónica Teresa, Martínez Romero, Julio César, Rogel Hernández, Marco Antonio, Ormeño Orrillo, Ernesto Aldo, Martínez Romero, María Esperanza (2013) Gut and Root Microbiota Commonalities Applied And Environmental Microbiology 79(1):2-9 [doi:10.1128/AEM.02553-12]23104406
2013Castillo-Ramírez, S., Feil, E.J. (2013) Population genetics The Prokaryotes: Prokaryotic Biology And Symbiotic Associations ():255-266 [doi:10.1007/978-3-642-30194-0_83]
2013Martínez Aguilar, Lourdes, Caballero Mellado, José de Jesús, Estrada De Los Santos, Paulina (2013) Transfer of Wautersia numazuensis to the genus Cupriavidus as Cupriavidus numazuensis comb. nov. International Journal Of Systematic And Evolutionary Microbiology 63(1):208-211 [doi:10.1099/ijs.0.038729-0]22389284
2013Keseler, I.M., Mackie, A., Peralta Gil, Martín, Santos Zavaleta, Alberto, Gama Castro, MA. DEL SOCORRO, Bonavides Martínez, César Augusto, Fulcher, C., Huerta Moreno, Araceli, Kothari, A., Krummenacker, M., Latendresse, M., Muñíz Rascado, Luis José, Ong, Q., Paley, S., Schroder, I., Shearer, A.G., Subhraveti, P., Travers, M., Weerasinghe, D., Weiss, V., Collado Vides, Pedro Julio, Gunsalus, R.P., Paulsen, I., Karp, P.D. (2013) EcoCyc: fusing model organism databases with systems biology Nucleic Acids Research 41(D1):605-612 [doi:10.1093/nar/gks1027]23143106
2013Ferrera-Rodríguez, O., Greer, C.W., Juck, D., Consaul, L. L., Martínez Romero, María Esperanza, Whyte, L.G. (2013) Hydrocarbon-degrading potential of microbial communities from Arctic plants Journal Of Applied Microbiology 114(1):71-83 [doi:10.1111/jam.12020]22984892
2013Salgado Osorio, Heladia, Peralta Gil, Martín, Gama Castro, MA. DEL SOCORRO, Santos Zavaleta, Alberto, Muñíz Rascado, Luis José, Garcia Sotelo, Jair Santiago, Weiss, V., Solano Lira, Hilda, Martínez Flores, Irma, Medina Rivera, Alejandra Eugenia, Salgado Osorio, Gerardo, Alquicira Hernández, Shirley, Alquicira Hernández, Kevin, López Fuentes, Alejandra Cristina, Porrón Sotelo, Liliana, Huerta Moreno, Araceli, Bonavides Martínez, César Augusto, Balderas MartÍnez, Yalbi Itzel, Pannier, Lucia, Olvera, M., Labastida, A., Jiménez-Jacinto, V., Vega-Alvarado, L., del Moral Chávez, Victor Manuel, Hernández Álvarez, Alfredo José, Morett, E., Collado Vides, Pedro Julio (2013) RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more Nucleic Acids Research 41(D1):203-213 [doi:10.1093/nar/gks1201]23203884
2012Ormeño Orrillo, Ernesto Aldo, Menna, P., Almeida, L.G.P., Ollero, F.J., Nicolás, M.F., Rodrígues, E.P., Nakatani, A.S., Batista, J.S.S., Chueire, L.M.O., Souza, R.C., Vasconcelos, A.T.R., Megias, M., Hungria, M., Martínez Romero, María Esperanza (2012) Genomic basis of broad host range and environmental adaptability of Rhizobium tropici CIAT 899 and Rhizobium sp PRF 81 which are used in inoculants for common bean (Phaseolus vulgaris L.) Bmc Genomics 13():735-735 [doi:10.1186/1471-2164-13-735]23270491
2012Althabegoiti, M.J., LOZANO AGUIRRE BELTRÁN, Luis Fernando, Torres-Tejerizo, G., Ormeño Orrillo, Ernesto Aldo, Rogel Hernández, Marco Antonio, González Zúñiga, Víctor Manuel, Martínez Romero, María Esperanza (2012) Genome Sequence of Rhizobium grahamii CCGE502, a Broad-Host-Range Symbiont with Low Nodulation Competitiveness in Phaseolus vulgaris Journal Of Bacteriology 194(23):6651-6652 [doi:10.1128/JB.01785-12]23144400
2012Tejerizo, G.T., Lozano, L, Gonzalez, V, Bustos, P, Romero, D, Brom, S (2012) Draft Genome Sequence of the Bean-Nodulating Sinorhizobium fredii Strain GR64 Journal Of Bacteriology 194(24):6978-6978 [doi:10.1128/JB.01882-12]23209231
2012Wisniewski-Dye, Florence, Lozano, Luis, Acosta-Cruz, Erika, Borland, Stephanie, Drogue, Benoit, Prigent-Combaret, Claire, Rouy, Zoe, Barbe, Valerie, Mendoza Herrera, Alberto, Gonzalez, Victor, Mavingui, Patrick (2012) Genome sequence of Azospirillum brasilense CBG497 and comparative analyses of Azospirillum core and accessory genomes provide insight into niche adaptation Genes 3(4):576-602 [doi:10.3390/genes3040576]24705077
2012Ormeño Orrillo, Ernesto Aldo, Rogel Hernández, Marco Antonio, Chueire, L.M.O., Tiedje, J.M., Martínez Romero, María Esperanza, Hungria, M. (2012) Genome Sequences of Burkholderia sp Strains CCGE1002 and H160, Isolated from Legume Nodules in Mexico and Brazil Journal Of Bacteriology 194(24):6927-6927 [doi:10.1128/JB.01756-12]23209196
2012Fernández-Sandoval, M.T., Huerta-Beristain, G., Trujillo-Martínez, B., Bustos Arcos, Virginia Patricia, González Zúñiga, Víctor Manuel, Bolivar, F., Gosset, G., Martínez, A. (2012) Laboratory metabolic evolution improves acetate tolerance and growth on acetate of ethanologenic Escherichia coli under non-aerated conditions in glucose-mineral medium Applied Microbiology And Biotechnology 96(5):1291-1300 [doi:10.1007/s00253-012-4177-y]22669633
2012Rosenblueth, M., López-López, A., Martínez, J., Rogel, M.A., Toledo, I., Martínez-Romero, E. (2012) Seed bacterial endophytes: Common genera, seed-to-seed variability and their possible role in plants Acta Horticulturae 938():39-48 [doi:10.17660/ActaHortic.2012.938.4]
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2012Servín Garcidueñas, Luis Eduardo, Martínez Romero, María Esperanza (2012) Complete Mitochondrial and Plastid Genomes of the Green Microalga Trebouxiophyceae sp Strain MX-AZ01 Isolated from a Highly Acidic Geothermal Lake Eukaryotic cell 11(11):1417-1418 [doi:10.1128/EC.00244-12]23104370
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2012Marin-Cevada, V., Muñoz-Rojas, J., Caballero-Mellado, J, Mascarua-Esparza, M.A., Castañeda-Lucio, M., Carreno-López, R., Estrada-de los Santos, P, Fuentes-Ramírez, L.E. (2012) Antagonistic interactions among bacteria inhabiting pineapple APPLIED SOIL ECOLOGY 61(SI):230-235 [doi:10.1016/j.apsoil.2011.11.014]
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2012García-García, J.D., Olin-Sandoval, V., Saavedra, E., Girard Cuesy, María de Lourdes, Hernández Delgado, Georgina, Moreno-Sánchez, R. (2012) Sulfate uptake in photosynthetic Euglena gracilis. Mechanisms of regulation and contribution to cysteine homeostasis Biochimica Et Biophysica Acta-General Subjects 1820(10):1567-1575 [doi:10.1016/j.bbagen.2012.05.002]22609877
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2009Lozada-Chvez, Irma, Contreras-Moreira, Bruno, Collado-Vides, Julio (2009) Evolution of Bacterial Regulatory Networks:"The Role of DNA-Binding Specificity" Origins Of Life And Evolution Of Biospheres 39(3-4):280-281
2009Lozada-Chavez, Irma, Montoya, Lilia, Rodriguez, Nuria, Marin, Irma, Amils, Ricardo (2009) Metanogenic Diversity Through mcrA Gene in Hypersaline Conditions Origins Of Life And Evolution Of Biospheres 39(3-4):382-383
2009Jimenez-Cardoso, Enedina, Eligio-Garcia, Leticia, Cortes-Campos, Adrian, Flores-Luna, Andres, Valencia-Mayoral, Pedro, Lozada-Chavez, Irma (2009) Changes in beta-giardin sequence of Giardia intestinalis sensitive and resistant to albendazole strains Parasitology Research 105(1):25-33 [doi:10.1007/s00436-009-1363-7]19214572
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2009Couillerot, O., Prigent-Combaret, C., Caballero-Mellado, J., Moenne-Loccoz, Y. (2009) Pseudomonas fluorescens and closely-related fluorescent pseudomonads as biocontrol agents of soil-borne phytopathogens Letters In Applied Microbiology 48(5):505-512 [doi:10.1111/j.1472-765X.2009.02566.x]19291210
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2009Rincon-Rosales, Reiner, Lloret, Lourdes, Ponce, Edith, Martinez-Romero, Esperanza (2009) Rhizobia with different symbiotic efficiencies nodulate Acaciella angustissima in Mexico, including Sinorhizobium chiapanecum sp nov which has common symbiotic genes with Sinorhizobium mexicanum Fems Microbiology Ecology 67(1):103-117 [doi:10.1111/j.1574-6941.2008.00590.x]19120461
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2008Valdes-Lopez, Oswaldo, Hernandez, Georgina (2008) Transcriptional regulation and signaling in phosphorus starvation: What about legumes? Journal Of Integrative Plant Biology 50(10):1213-1222 [doi:10.1111/j.1744-7909.2008.00758.x]19017108
2008Angel Vences-Guzman, Miguel, Geiger, Otto, Sohlenkamp, Christian (2008) Sinorhizobium meliloti mutants deficient in phosphatidylserine decarboxylase accumulate phosphatidylserine and are strongly affected during symbiosis with alfalfa Journal Of Bacteriology 190(20):6846-6856 [doi:10.1128/JB.00610-08]18708506
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2008Sepulveda, Edgardo, Perez-Mendoza, Daniel, Ramirez-Romero, Miguel A., Soto, Maria J., Lopez-Lara, Isabel M., Geiger, Otto, Sanjuan, Juan, Brom, Susana, Romero, David (2008) Transcriptional interference and repression modulate the conjugative ability of the symbiotic plasmid of Rhizobium etli Journal Of Bacteriology 190(12):4189-4197 [doi:10.1128/JB.00041-08]18424522
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2004Sepulveda, Edgardo, Perez-Mendoza, Daniel, Munoz, Socorro, Ramirez-Romero, Miguel A., Soto, Maria Jose, Cervantes, Laura, Herrera-Cervera, Jose A., Lopez-Lara, Isabel Sabel, Geiger, Otto, Sanuan, Juan, Brom, Susana, Romero, David (2004) Identification of functional mob regions in Rhizobium etli: Evidence for self-transmissibility of the symbiotic plasmid pRetCFN42d Journal Of Bacteriology 186(17):5753-5761 [doi:10.1128/JB.186.17.5753-5761.2004]15317780
2004Caballero-Mellado, J, Martinez-Aguilar, L, Paredes-Valdez, G, Estrada-de los Santos, P (2004) Burkholderia unamae sp nov., an N-2-fixing rhizospheric and endophytic species International Journal Of Systematic And Evolutionary Microbiology 54(4):1165-1172 [doi:10.1099/ijs.0.02951-0]15280286
2004Peralta, H, Mora, Y, Salazar, E, Encarnacion, S, Palacios, R, Mora, J (2004) Engineering the nifH promoter region and abolishing poly-beta-hydroxybutyrate accumulation in Rhizobium etli enhance nitrogen fixation in symbiosis with Phaseolus vulgaris Applied And Environmental Microbiology 70(6):3272-3281 [doi:10.1128/AEM.70.6.3272-3281.2004]15184121
2004Geiger, O, Sohlenkamp, C, Martinez-Morales, F, Gao, JL, Zavaleta-Pastor, M, Lopez-Lara, IM (2004) Regulation of membrane lipid biosynthesis in eubacteria FASEB JOURNAL 18(8, S):3-3
2004Rosenblueth Laguette, Mónica Teresa, Martínez Romero, María Esperanza (2004) Rhizobium etli maize populations and their competitiveness for root colonization Archives Of Microbiology 181(5):337-344 [doi:10.1007/s00203-004-0661-9]15024554
2004Soberon, N, Venkova-Canova, T, Ramirez-Romero, MA, Tellez-Sosa, J, Cevallos, MA (2004) Incompatibility and the partitioning site of the repABC basic replicon of the symbiotic plasmid from Rhizobium etli Plasmid 51(3):203-216 [doi:10.1016/j.plasmid.2004.01.005]15109827
2004Batista, C.V.F., Del Pozo, L., Zamudio, F.Z., Contreras Martínez, Sandra, Becerril, B., Wanke, E., Possani, L.D. (2004) Proteomics of the venom from the Amazonian scorpion Tityus cambridgei and the role of prolines on mass spectrometry analysis of toxins JOURNAL OF CHROMATOGRAPHY B-ANALYTICAL TECHNOLOGIES IN THE BIOMEDICAL AND LIFE SCIENCES 803(1):55-66 [doi:10.1016/j.jchromb.2003.09.002]15025998
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2004Oviedo, N.A., Salgado Osorio, Heladia, Collado Vides, Pedro Julio, Guarneros, G. (2004) Distribution of minigenes in the bacteriophage lambda chromosome Gene 329(1-2):115-124 [doi:10.1016/j.gene.2003.12.031]15033534
2004Sohlenkamp, C, de Rudder, KEE, Geiger, O (2004) Phosphatidylethanolamine is not essential for growth of Sinorhizobium meliloti on complex culture media Journal Of Bacteriology 186(6):1667-1677 [doi:10.1128/JB.186.6.1667-1677.2004]14996797
2004Rosenblueth Laguette, Mónica Teresa, Martínez Martínez, Lucía Lourdes, Silva, J., Martínez Romero, María Esperanza (2004) Klebsiella variicola, a novel species with clinical and plant-associated isolates Systematic And Applied Microbiology 27(1):27-35 [doi:10.1078/0723-2020-00261]15053318
2004Dunn, MF, Araiza, G, Mora, J (2004) Biochemical characterization of a Rhizobium etli monovalent cation-stimulated acyl-coenzyme A carboxylase with a high substrate specificity constant for propionyl-coenzyme A MICROBIOLOGY-SGM 150(2):399-406 [doi:10.1099/mic.0.26779-0]14766918
2004Karp, PD, Arnaud, M, Collado-Vides, J, Ingraham, J, Paulsen, IT, Saier, MH (2004) The E-coli EcoCyc database: No longer just a metabolic pathway database Asm News 70(1):25-30
2004Salgado Osorio, Heladia, Gama Castro, MA. DEL SOCORRO, Martínez Antonio, Agustino, Díaz Peredo, Edgar Ulises, Sánchez Solano, Erika Fabiola, Peralta Gil, Martín, García Alonso, Delfino, Jiménez Jacinto, Verónica, Santos Zavaleta, Alberto, Bonavides Martínez, César Augusto, Collado Vides, Pedro Julio (2004) RegulonDB (version 4.0): transcriptional regulation, operon organization and growth conditions in Escherichia coli K-12 Nucleic Acids Research 32(SI):303-306 [doi:10.1093/nar/gkh140]14681419
2004Janga, SC, Moreno-Hagelsieb, G (2004) Conservation of adjacency as evidence of paralogous operons Nucleic Acids Research 32(18):5392-5397 [doi:10.1093/nar/gkh882]15477389
2003Martínez Antonio, Agustino, Salgado Osorio, Heladia, Gama Castro, MA. DEL SOCORRO, Gutiérrez Ríos, Rosa María, Jiménez Jacinto, Verónica, Collado Vides, Pedro Julio (2003) Environmental conditions and transcriptional regulation in Escherichia coli: A physiological integrative approach BIOTECHNOLOGY AND BIOENGINEERING 84(7):743-749 [doi:10.1002/bit.10846]14708114
2003Martinez-Morales, F, Schobert, M, Lopez-Lara, IM, Geiger, O (2003) Pathways for phosphatidylcholine biosynthesis in bacteria MICROBIOLOGY-SGM 149(12):3461-3471 [doi:10.1099/mic.0.26522-0]14663079
2003Wang, E.T., Kan, F.L., Tan, Z.Y., Toledo García, Icela Ivonne, Chen, W.X., Martínez Romero, María Esperanza (2003) Diverse Mesorhizobium plurifarium populations native to Mexican soils Archives Of Microbiology 180(6):444-454 [doi:10.1007/s00203-003-0610-z]14576977
2003Jauregui, R, Abreu-Goodger, C, Moreno-Hagelsieb, G, Collado-Vides, J, Merino, E (2003) Conservation of DNA curvature signals in regulatory regions of prokaryotic genes Nucleic Acids Research 31(23):6770-6777 [doi:10.1093/nar/gkg882]14627810
2003Munoz-Rojas, J, Caballero-Mellado, J (2003) Population dynamics of Gluconacetobacter diazotrophicus in sugarcane cultivars and its effect on plant growth Microbial Ecology 46(4):454-464 [doi:10.1007/s00248-003-0110-3]14722690
2003Martinez, L, Caballero-Mellaod, J, Orozco, J, Martinez-Romero, E (2003) Diazotrophic bacteria associated with banana (Musa spp.). PLANT AND SOIL 257(1):35-47 [doi:10.1023/A:1026283311770]
2003Medina, G., Juarez, K., Diaz, R, Soberon-Chavez, Gloria (2003) Transcriptional regulation of Pseudomonas aeruginosa rhlR, encoding a quorum-sensing regulatory protein MICROBIOLOGY-SGM 149(11):3073-3081 [doi:10.1099/mic.0.26282-0]14600219
2003Gutiérrez Ríos, Rosa María, Rosenblueth, D.A., Loza, José Antonio, Huerta Moreno, Araceli, Glasner, J.D., Blattner, F.R., Collado Vides, Pedro Julio (2003) Regulatory network of Escherichia coli: Consistency between literature knowledge and microarray profiles GENOME RESEARCH 13(11):2435-2443 [doi:10.1101/gr.1387003]14597655
2003Huerta, AM, Collado-Vides, J (2003) Sigma70 promoters in Escherichia coli: Specific transcription in dense regions of overlapping promoter-like signals Journal Of Molecular Biology 333(2):261-278 [doi:10.1016/j.jmb.2003.07.017]14529615
2003Perret, X., Kobayashi, H., Collado Vides, Pedro Julio (2003) Regulation of expression of symbiotic genes in Rhizobium sp. NGR234 INDIAN JOURNAL OF EXPERIMENTAL BIOLOGY 41(10):1101-111315242276
2003Martinez-Antonio, A, Collado-Vides, J (2003) Identifying global regulators in transcriptional regulatory networks in bacteria Current Opinion In Microbiology 6(5):482-489 [doi:10.1016/j.mib.2003.09.002]14572541
2003Young, J.M., Kuykendall, L.D., Martínez Romero, María Esperanza, Kerr, A., Sawada, H. (2003) Classification and nomenclature of Agrobacterium and Rhizobium - a reply to Farrand et al. (2003) International Journal Of Systematic And Evolutionary Microbiology 53(5):1689-1695 [doi:10.1099/ijs.0.02762-0]13130069
2003Collado Vides, Pedro Julio, Medrano Soto, Luis Arturo, Tusié-Luna, M.T. (2003) With the finished human genome in hand, what next? Genome Biology 4(7):328-328 [doi:10.1186/gb-2003-4-7-328]12844356
2003Guo, XW, Flores, M, Mavingui, P, Fuentes, SI, Hernandez, G, Davila, G, Palacios, R (2003) Natural genomic design in Sinorhizobium meliloti novel genomic architectures GENOME RESEARCH 13(8):1810-1817 [doi:10.1101/gr.1260903]12902376
2003Desnoues, N., Lin, M., Guo, XW, Ma, L.Y., Carreno-Lopez, R., Elmerich, C. (2003) Nitrogen fixation genetics and regulation in a Pseudomonas stutzeri strain associated with rice MICROBIOLOGY-SGM 149(8):2251-2262 [doi:10.1099/mic.0.26270-0]12904565
2003González Zúñiga, Víctor Manuel, Bustos Arcos, Virginia Patricia, Ramírez Romero, Miguel Ángel, Medrano Soto, Luis Arturo, Salgado Osorio, Heladia, Hernández González, Ismael Luis, Hernández Celis, Juan Carlos, Quintero Hernández, Verónica, Moreno Hagelsieb, Gabriel, Girard Cuesy, María de Lourdes, Rodríguez Sánchez, Oscar, Flores López, Margarita, Cevallos Gaos, Miguel Ángel Carlos, Collado Vides, Pedro Julio, Romero Camarena, David René, Dávila Ramos, José Guillermo (2003) The mosaic structure of the symbiotic plasmid of Rhizobium etli CFN42 and its relation to other symbiotic genome compartments Genome Biology 4(6):R36- [doi:10.1186/gb-2003-4-6-r36]12801410
2003Lopez-Lara, IM, Sohlenkamp, C, Geiger, O (2003) Membrane lipids in plant-associated bacteria: Their biosyntheses and possible functions Molecular Plant-Microbe Interactions 16(7):567-579 [doi:10.1094/MPMI.2003.16.7.567]12848422
2003Willems, A., Fernandez-Lopez, M., Munoz-Adelantado, E., Goris, J., De Vos, P., Martínez Romero, María Esperanza, Toro, N., Gillis, M. (2003) Description of new Ensifer strains from nodules and proposal to transfer Ensifer adhaerens Casida 1982 to Sinorhizobium as Sinorhizobium adhaerens comb. nov. Request for an opinion International Journal Of Systematic And Evolutionary Microbiology 53(4):1207-1217 [doi:10.1099/ijs.0.02264-0]12892151
2003Djordjevic, M.A., Chen, H.C., Natera, S., Van Noorden, G., Menzel, C., Taylor, S., Renard, C., Geiger, Otto, Weiller, G.F. (2003) A global analysis of protein expression profiles in Sinorhizobium meliloti: Discovery of new genes for nodule occupancy and stress adaptation Molecular Plant-Microbe Interactions 16(6):508-524 [doi:10.1094/MPMI.2003.16.6.508]12795377
2003Silvente, S, Camas, A, Lara Flores, Miguel (2003) Molecular cloning of the cDNA encoding aspartate aminotransferase from bean root nodules and determination of its role in nodule nitrogen metabolism Journal Of Experimental Botany 54(387):1545-1551 [doi:10.1093/jxb/erg161]12730270
2003Encarnacion, S, Guzman, Y, Dunn, MF, Hernandez, M, Vargas, MD, Mora, J (2003) Proteome analysis of aerobic and fermentative metabolism in Rhizobium etli CE3 Proteomics 3(6):1077-1085 [doi:10.1002/pmic.200300427]12833533
2003Vargas, MD, Encarnacion, S, Davalos, A, Reyes-Perez, A, Mora, Y, Garcia-de los Santos, A, Brom, S, Moral, J (2003) Only one catalase, katG, is detectable in Rhizobium etli, and is encoded along with the regulator OxyR on a plasmid replicon MICROBIOLOGY-SGM 149(5):1165-1176 [doi:10.1099/mic.0.25909-0]12724378
2003Broughton, WJ, Hernandez, G, Blair, M, Beebe, S, Gepts, P, Vanderleyden, J (2003) Beans (Phaseolus spp.) - model food legumes PLANT AND SOIL 252(1):55-128 [doi:10.1023/A:1024146710611]
2003Martinez-Romero, E (2003) Diversity of Rhizobium-Phaseolus vulgaris symbiosis: overview and perspectives PLANT AND SOIL 252(1):11-23 [doi:10.1023/A:1024199013926]
2003Snoeck, C., Verreth, C., Hernández Lucas, Ismael, Martínez Romero, María Esperanza, Vanderleyden, J. (2003) Identification of a third sulfate activation system in Sinorhizobium sp strain BR816: the CysDN sulfate activation complex Applied And Environmental Microbiology 69(4):2006-2014 [doi:10.1128/AEM.69.4.2006-2014.2003]12676676
2003Cordoba, E, Shishkova, S, Vance, CP, Hernandez, G (2003) Antisense inhibition of NADH glutamate synthase impairs carbon/nitrogen assimilation in nodules of alfalfa (Medicago sativa L.) PLANT JOURNAL 33(6):1037-1049 [doi:10.1046/j.1365-313X.2003.01686.x]12631328
2003Suarez, R, Marquez, J, Shishkova, S, Hernandez, G (2003) Overexpression of alfalfa cytosolic glutamine synthetase in nodules and flowers of transgenic Lotus japonicus plants Physiologia Plantarum 117(3):326-336 [doi:10.1034/j.1399-3054.2003.00053.x]12654032
2003Tun-Garrido, C, Bustos, P, Gonzalez, V, Brom, S (2003) Conjugative transfer of p42a from Rhizobium etli CFN42, which is required for mobilization of the symbiotic plasmid, is regulated by quorum sensing Journal Of Bacteriology 185(5):1681-1692 [doi:10.1128/JB.185.5.1681-1692.2003]12591886
2003Valencia-Cantero, E, Pena-Cabriales, JJ, Martinez-Romero, E (2003) The corrosion effects of sulfate- and ferric-reducing bacterial consortia on steel GEOMICROBIOLOGY JOURNAL 20(2):157-169 [doi:10.1080/01490450390193264]
2003Sohlenkamp, C, Lopez-Lara, IM, Geiger, O (2003) Biosynthesis of phosphatidylcholine in bacteria Progress In Lipid Research 42(2):115-162 [doi:10.1016/S0163-7827(02)00050-4]12547654
2003Toledo García, Icela Ivonne, Lloret y Sánchez, Lourdes Teresa, Martínez Romero, María Esperanza (2003) Sinorhizobium americanus sp nov., a new Sinorhizobium species nodulating native Acacia spp. in Mexico Systematic And Applied Microbiology 26(1):54-64 [doi:10.1078/072320203322337317]12747410
2003Uhde-Stone, C., Zinn, K.E., Ramirez-Yanez, M, Li, A.G., Vance, C.P., Allan, D.L. (2003) Nylon filter arrays reveal differential gene expression in proteoid roots of white lupin in response to phosphorus deficiency Plant Physiology 131(3):1064-1079 [doi:10.1104/pp.102.016881]12644659
2003Silva, C, Vinuesa, P, Eguiarte, LE, Martinez-Romero, E, Souza, V (2003) Rhizobium etli and Rhizobium gallicum nodulate common bean (Phaseolus vulgaris) in a traditionally managed milpa plot in Mexico: Population genetics and biogeographic implications Applied And Environmental Microbiology 69(2):884-893 [doi:10.1128/AEM.69.2.884-893.2003]12571008
2003Silvente, S, Camas, A, Lara Flores, Miguel (2003) Heterogeneity of sucrose synthase genes in bean (Phaseolus vulgaris L.): evidence for a nodule-enhanced sucrose synthase gene Journal Of Experimental Botany 54(383):749-755 [doi:10.1097/jxb/erg086]12554718
2003Vinuesa Fleischmann, Pablo, Neumann-Silkow, F., Pacios-Bras, C., Spaink, H.P., Martínez Romero, María Esperanza, Werner, D. (2003) Genetic analysis of a pH-regulated operon from Rhizobium tropici CIAT899 involved in acid tolerance and nodulation competitiveness Molecular Plant-Microbe Interactions 16(2):159-168 [doi:10.1094/MPMI.2003.16.2.159]12575750
2003Valderrama, B, Oliver, P, Medrano-Soto, A, Vazquez-Duhalt, R (2003) Evolutionary and structural diversity of fungal laccases ANTONIE VAN LEEUWENHOEK INTERNATIONAL JOURNAL OF GENERAL AND MOLECULAR; MICROBIOLOGY 84(4):289-299 [doi:10.1023/A:1026070122451]14574106
2003Jahn, OJ, Davila, G, Romero, D, Noel, KD (2003) BacS: An abundant bacteroid protein in Rhizobium etli whose expression ex planta requires nifA Molecular Plant-Microbe Interactions 16(1):65-73 [doi:10.1094/MPMI.2003.16.1.65]12580283
2002Degrave, W.M., Vargas, R., Alvarez, F., Collado Vides, Pedro Julio, Nunez, L., Ramirez, J.L., Grau, O. (2002) Towards a bioinformatics network for Latin America and the Caribbean (LACBioNet). Applied bioinformatics 1(1):53-5615130857
2002Moreno Hagelsieb, Gabriel, Collado Vides, Pedro Julio (2002) A powerful non-homology method for the prediction of operons in prokaryotes. Bioinformatics 18 Suppl 1():329-33612169563
2002Sohlenkamp, C, Wood, CC, Roeb, GW, Udvardi, MK (2002) Characterization of Arabidopsis AtAMT2, a high-affinity ammonium transporter of the plasma membrane Plant Physiology 130(4):1788-1796 [doi:10.1104/pp.008599]12481062
2002Quintero, V, Cevallos, MA, Davila, G (2002) A site-specific recombinase (RinQ) is required to exert incompatibility towards the symbiotic plasmid of Rhizobium etli Molecular Microbiology 46(4):1023-1032 [doi:10.1046/j.1365-2958.2002.03205.x]12421308
2002Hernandez-Lucas, I, Mavingui, P, Finan, T, Chain, P, Martinez-Romero, E (2002) In vivo cloning strategy for Rhizobium plasmids Biotechniques 33(4):782-78212398186
2002Garcia-de los Santos, A, Morales, A, Baldoma, L, Clark, SRD, Brom, S, Yost, CK, Hernandez-Lucas, I, Aguilar, J, Hynes, MF (2002) The glcB locus of Rhizobium leguminosarum VF39 encodes an arabinose-inducible malate synthase Canadian Journal Of Microbiology 48(10):922-932 [doi:10.1139/W02-091]12489782
2002Wang, E.T., Rogel Hernández, Marco Antonio, Sui, X.H., Chen, W.X., Martínez Romero, María Esperanza, van Berkum, P. (2002) Mesorhizobium amorphae, a rhizobial species that nodulates Amorpha fruticosa, is native to American soils Archives Of Microbiology 178(4):301-305 [doi:10.1007/s00203-002-0448-9]12209264
2002Wang, E.T., Tan, Z.Y., Willems, A., Fernandez-Lopez, M., Reinhold-Hurek, B., Martínez Romero, María Esperanza (2002) Sinorhizobium morelense sp nov., a Leucaena leucocephala-associated bacterium that is highly resistant to multiple antibiotics International Journal Of Systematic And Evolutionary Microbiology 52(5):1687-1693 [doi:10.1099/ijs.0.01954-0]12361275
2002Cevallos, MA, Porta, H, Izquierdo, J, Tun-Garrido, C, Garcia-de-los-Santos, A, Davila, G, Brom, S (2002) Rhizobium etli CFN42 contains at least three plasmids of the repABC family: a structural and evolutionary analysis Plasmid 48(2):104-116 [doi:10.1016/S0147-619X(02)00119-1]12383728
2002Acosta-Durán, C., Martínez Romero, María Esperanza (2002) Diversity of rhizobia from nodules of the leguminous tree Gliricidia sepium, a natural host of Rhizobium tropici Archives Of Microbiology 178(2):161-164 [doi:10.1007/s00203-002-0433-3]12115061
2002Weissenmayer, B, Gao, JL, Lopez-Lara, IM, Geiger, O (2002) Identification of a gene required for the biosynthesis of ornithine-derived lipids Molecular Microbiology 45(3):721-733 [doi:10.1046/j.1365-2958.2002.03043.x]12139618
2002de Daruvar, A, Collado-Vides, J, Valencia, A (2002) Analysis of the cellular functions of Escherichia coli operons and their conservation in Bacillus subtilis Journal Of Molecular Evolution 55(2):211-221 [doi:10.1007/s0023900239-002-2317-1]12107597
2002Silvente Keller, Sonia Teresa, Blanco López, María de Lourdes, Camas, Alberto, Ortega, José Luis, Ramírez Yáñez, Mario, Lara Flores, Miguel (2002) Rhizobium etli mutant modulates carbon and nitrogen metabolism in Phaseolus vulgaris nodules Molecular Plant-Microbe Interactions 15(7):728-733 [doi:10.1094/MPMI.2002.15.7.728]12118889
2002Tellez-Sosa, J, Soberon, N, Vega-Segura, A, Torres-Marquez, ME, Cevallos, MA (2002) The Rhizobium etli cyaC product: Characterization of a novel adenylate cyclase class Journal Of Bacteriology 184(13):3560-3568 [doi:10.1128/JB.184.13.3560-3568.2002]12057950
2002Collado-Vides, J, Moreno-Hagelsieb, G, Medrano-Soto, A (2002) Microbial computational genomics of gene regulation PURE AND APPLIED CHEMISTRY 74(6):899-905 [doi:10.1351/pac200274060899]
2002Camas, A, Cardenas, L, Quinto, C, Lara Flores, Miguel (2002) Expression of different calmodulin genes in bean (Phaseolus vulgaris L.): Role of nod factor on calmodulin gene regulation Molecular Plant-Microbe Interactions 15(5):428-436 [doi:10.1094/MPMI.2002.15.5.428]12036273
2002Brom Klanner, Susana, Girard Cuesy, María de Lourdes, García de los Santos, Alejandro, Sanjuan-Pinilla, J.M., Olivares, J., Sanjuan, J. (2002) Conservation of plasmid-encoded traits among bean-nodulating Rhizobium species Applied And Environmental Microbiology 68(5):2555-2561 [doi:10.1128/AEM.68.5.2555-2561-2002]11976134
2002Castillo, P, Zamilpa, A, Marquez, J, Hernandez, G, Lara Flores, Miguel, Alvarez, L (2002) Comparative study of differentiation levels and valepotriate content of in vitro cultures and regenerated and wild plants of Valeriana edulis ssp procera JOURNAL OF NATURAL PRODUCTS 65(4):573-575 [doi:10.1021/np0104267]11975504
2002Dunn, MF, Araiza, G, Encarnacion, S, del Vargas, M, Mora, J (2002) Effect of aniA (carbon flux regulator) and phaC (poly-beta-hydroxybutyrate synthase) mutations on pyruvate metabolism in Rhizobium etli Journal Of Bacteriology 184(8):2296-2299 [doi:10.1128/JB.184.8.2296-2299.2002]11914362
2002Encarnacion, S, del Vargas, M, Dunn, MF, Davalos, A, Mendoza, G, Mora, Y, Mora, J (2002) AniA regulates reserve polymer accumulation and global protein expression in Rhizobium etli Journal Of Bacteriology 184(8):2287-2295 [doi:10.1128/JB.184.8.2287-2295.2002]11914361
2002Estrada, P, Mavingui, P, Cournoyer, B, Fontaine, F, Balandreau, J, Caballero-Mellado, J (2002) A N-2-fixing endophytic Burkholderia sp associated with maize plants cultivated in Mexico Canadian Journal Of Microbiology 48(4):285-294 [doi:10.1139/w02-023]12030700
2002Huerta, AM, Glasner, JD, Gutierrez-Rios, RM, Blattner, FR, Collado-Vides, J (2002) GETools: gene expression tool for analysis of transcriptome experiments in E. coli TRENDS IN GENETICS 18(4):217-218 [doi:10.1016/S0168-9525(01)02620-8]
2002Benítez Bellón, Esperanza, Moreno Hagelsieb, Gabriel, Collado Vides, Pedro Julio (2002) Evaluation of thresholds for the detection of binding sites for regulatory proteins in Escherichia coli K12 DNA. Genome Biology 3(3):RESEARCH0013-11897025
2002Geiger, Otto, López Lara, Isabel María (2002) Rhizobial acyl carrier proteins and their roles in the formation of bacterial cell-surface components that are required for the development of nitrogen-fixing root nodules on legume hosts Fems Microbiology Letters 208(2):153-162 [doi:10.1016/S0378-1097(02)00478-0]11959430
2002Lira-Ruan, V, Ross, EJH, Sarath, G, Klucas, RV, Arredondo-Peter, R (2002) Mapping and analysis of a hemoglobin gene family from Oryza sativa PLANT PHYSIOLOGY AND BIOCHEMISTRY 40(3):199-202 [doi:10.1016/S0981-9428(02)01365-7]
2002Falcon, LI, Escobar-Briones, E, Romero, D (2002) Nitrogen fixation patterns displayed by cyanobacterial consortia in Alchichica crater-lake, Mexico Hydrobiologia 467(1-3):71-78 [doi:10.1023/A:1014984629985]
2002Sessitsch, A, Howieson, JG, Perret, X, Antoun, H, Martinez-Romero, E (2002) Advances in Rhizobium research CRITICAL REVIEWS IN PLANT SCIENCES 21(4):323-378 [doi:10.1080/0735-260291044278]
2002Mavingui, P, Flores, M, Guo, XW, Davila, G, Perret, X, Broughton, WJ, Palacios, R (2002) Dynamics of genome architecture in Rhizobium sp strain NGR234 Journal Of Bacteriology 184(1):171-176 [doi:10.1128/JB.184.1.171-176.2002]11741857
2002Karp, PD, Riley, M, Saier, M, Paulsen, IT, Collado-Vides, J, Paley, SM, Pellegrini-Toole, A, Bonavides, C, Gama-Castro, S (2002) The EcoCyc database Nucleic Acids Research 30(1):56-58 [doi:10.1093/nar/30.1.56]11752253
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2001López, O., Morera, C., Miranda-Ríos, J., Girard Cuesy, María de Lourdes, Romero Camarena, David René, Soberón Chávez, Mario (2001) Regulation of gene expression in response to oxygen in Rhizobium etli: Role of FnrN in fixNOQP expression and in symbiotic nitrogen fixation Journal Of Bacteriology 183(24):6999-7006 [doi:10.1128/JB.183.24.6999-7006.2001]11717256
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2001Ramirez-Romero, MA, Tellez-Sosa, J, Barrios, H, Perez-Oseguera, A, Rosas, V, Cevallos, MA (2001) RepA negatively autoregulates the transcription of the repABC operon of the Rhizobium etli symbiotic plasmid basic replicon Molecular Microbiology 42(1):195-204 [doi:10.1046/j.1365-2958.2001.02621.x]11679078
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2001Rogel Hernández, Marco Antonio, Hernández Lucas, Ismael, Kuykendall, L.D., Balkwill, D.L., Martínez Romero, María Esperanza (2001) Nitrogen-fixing nodules with Ensifer adhaerens harboring Rhizobium tropici symbiotic plasmids Applied And Environmental Microbiology 67(7):3264-3268 [doi:10.1128/AEM.67.7.3264-3268.2001]11425750
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2001Vilazquez, E, Martinez-Romero, E, Rodriguez-Navarro, DN, Trujillo, ME, Daza, A, Mateos, PF, Martinez-Molina, E, van Berkum, P (2001) Characterization of rhizobial isolates of Phaseolus vulgaris by staircase electrophoresis of low-molecular-weight RNA Applied And Environmental Microbiology 67(2):1008-1010 [doi:10.1128/AEM.67.2.1008-1010.2001]11157280
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2001Gandara, B., Merino, A.L., Rogel Hernández, Marco Antonio, Martínez Romero, María Esperanza (2001) Limited genetic diversity of Brucella spp. JOURNAL OF CLINICAL MICROBIOLOGY 39(1):235-240 [doi:10.1128/JCM.39.1.235-240.2001]11136777
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2000Wang, ET, Martinez-Romero, E (2000) Sesbania herbacea-Rhizobium huautlense nodulation in flooded soils and comparative characterization of S. herbacea-nodulating rhizobia in different environments Microbial Ecology 40(1):25-32 [doi:10.1007/s002480000010]10977874
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2000González-Pasayo, R., Martínez Romero, María Esperanza (2000) Multiresistance genes of Rhizobium etli CFN42 Molecular Plant-Microbe Interactions 13(5):572-577 [doi:10.1094/MPMI.2000.13.5.572]10796024
2000van Heiden, Jacques, Rios, Alma. F., Collado-Vides, Julio (2000) Discovering regulatory elements in non-coding sequences by analysis of spaced dyads Nucleic Acids Research 28(8):1808-1818 [doi:10.1093/nar/28.8.1808]10734201
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2000Valencia-Morales, E, Romero, D (2000) Recombination enhancement by replication (RER) in Rhizobium etli Genetics 154(3):971-98310757747
2000Cruz-Vera, L.R., TOLEDO, I, Hernández-Sánchez, J., Guarneros, G (2000) Molecular basis for the temperature sensitivity of Escherichia coli pth(Ts) Journal Of Bacteriology 182(6):1523-1528 [doi:10.1128/JB.182.6.1523-1528.2000]10692356
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2000Sohlenkamp, C, Shelden, M, Howitt, S, Udvardi, M (2000) Characterization of Arabidopsis AtAMT2, a novel ammonium transporter in plants FEBS LETTERS 467(2-3):273-278 [doi:10.1016/S0014-5793(00)01153-4]10675553
2000Martinez-Salazar, JM, Romero, D (2000) Role of the ruvB gene in homologous and homeologous recombination in Rhizobium etli Gene 243(1-2):125-131 [doi:10.1016/S0378-1119(99)00548-X]10675620
2000van Helden, J., Andre, B., Collado Vides, Pedro Julio (2000) A web site for the computational analysis of yeast regulatory sequences Yeast 16(2):177-187 <a target="_blank" href="http://dx.doi.org/10.1002/(SICI)1097-0061(20000130)16:23.0.CO;2-9">[doi:10.1002/(SICI)1097-0061(20000130)16:23.0.CO;2-9]10641039
2000Arredondo Peter, José Raúl, Ramírez, Y.M., Sarath, G., Klucas, R.V. (2000) SEQUENCE ANALYSIS OF AN ANCIENT HEMOGLOBIN cDNA ISOLATED FROM THE MOSS Physcomitrella patens Plant Physiology 122():1457-
2000Strainic, MG, Sullivan, JJ, Collado-Vides, J, deHaseth, PL (2000) Promoter interference in a bacteriophage lambda control region: Effects of a range of interpromoter distances Journal Of Bacteriology 182(1):216-220 [doi:10.1128/JB.182.1.216-220.2000]10613884
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2000Schoenbeck, MA, Temple, SJ, Trepp, GB, Blumenthal, JM, Samac, DA, Gantt, JS, Hernandez, G, Vance, CP (2000) Decreased NADH glutamate synthase activity in nodules and flowers of alfalfa (Medicago sativa L.) transformed with an antisense glutamate synthase transgene Journal Of Experimental Botany 51(342):29-39 [doi:10.1093/jexbot/51.342.29]10938793
2000Diouf, A, de Lajudie, P, Neyra, M, Kersters, K, Gillis, M, Martinez-Romero, E, Gueye, M (2000) Polyphasic characterization of rhizobia that nodulate Phaseolus vulgaris in West Africa (Senegal and Gambia) International Journal Of Systematic And Evolutionary Microbiology 50(1):159-170 [doi:10.1099/00207713-50-1-159]10826800
1999Romero, D, Martinez-Salazar, J, Ortiz, E, Rodriguez, C, Valencia-Morales, E (1999) Repeated sequences in bacterial chromosomes and plasmids: a glimpse from sequenced genomes Research In Microbiology 150(9-10):735-743 [doi:10.1016/S0923-2508(99)00119-9]10673011
1999Ramirez, M, Valderrama, B, Arredondo-Peter, R, Soberon, M, Mora, J, Hernandez, G (1999) Rhizobium etli genetically engineered for the heterologous expression of Vitreoscilla sp hemoglobin: Effects on free-living and symbiosis Molecular Plant-Microbe Interactions 12(11):1008-1015 [doi:10.1094/MPMI.1999.12.11.1008]
1999Phillips, DA, Joseph, CM, Yang, GP, Martinez-Romero, E, Sanborn, JR, Volpin, H (1999) Identification of lumichrome as a Sinorhizobium enhancer of alfalfa root respiration and shoot growth PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA 96(22):12275-12280 [doi:10.1073/pnas.96.22.12275]10535912
1999Wang, ET, Roel, MA, Garcia-de los Santos, A, Martinez-Romero, Julio, Cevallos, MA, Martinez-Romero, E (1999) Rhizobium etli bv. mimosae, a novel biovar isolated from Mimosa affinis INTERNATIONAL JOURNAL OF SYSTEMATIC BACTERIOLOGY 49(4):1479-1491 [doi:10.1099/00207713-49-4-1479]10555329
1999Moreno-Hagelsieb, G, Gomez-Puyou, A, Soberon, X (1999) Escherichia coli TEM1 beta-lactamase in CTAB reverse micelles: exchange/diffusion-limited catalysis FEBS LETTERS 459(1):111-114 [doi:10.1016/S0014-5793(99)01228-4]10508927
1999Tan, ZY, Wang, ET, Peng, GX, Zhu, ME, Martinez-Romero, E, Chen, WX (1999) Characterization of bacteria isolated from wild legumes in the north-western regions of China INTERNATIONAL JOURNAL OF SYSTEMATIC BACTERIOLOGY 49(4):1457-1469 [doi:10.1099/00207713-49-4-1457]10555327
1999Caballero-Mellado, J, Lopez-Reyes, L, Bustillos-Cristales, R (1999) Presence of 16S rRNA genes in multiple replicons in Azospirillum brasilense Fems Microbiology Letters 178(2):283-288 [doi:10.1111/j.1574-6968.1999.tb08689.x]
1999Laeremans, T., Snoeck, C., Marien, J., Verreth, C., Martínez Romero, María Esperanza, Prome, J.C., Vanderleyden, J. (1999) Phaseolus vulgaris recognizes Azorhizobium caulinodans nod factors with a variety of chemical substituents Molecular Plant-Microbe Interactions 12(9):820-824 [doi:10.1094/MPMI.1999.12.9.820]10494633
1999Herrera-Cervera, JA, Caballero-Mellado, J, Laguerre, G, Tichy, HV, Requena, N, Amarger, N, Martinez-Romero, E, Olivares, J, Sanjuan, J (1999) At least five rhizobial species nodulate Phaseolus vulgaris in a Spanish soil Fems Microbiology Ecology 30(1):87-97 [doi:10.1016/S0168-6496(99)00044-6]
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1999Castillo, M, Flores, M, Mavingui, P, Martinez-Romero, E, Palacios, R, Hernandez, G (1999) Increase in alfalfa nodulation, nitrogen fixation, and plant growth by specific DNA amplification in Sinorhizobium meliloti Applied And Environmental Microbiology 65(6):2716-272210347066
1999Fuentes-Ramirez, LE, Caballero-Mellado, J, Sepulveda, J, Martinez-Romero, E (1999) Colonization of sugarcane by Acetobacter diazotrophicus is inhibited by high N-fertilization Fems Microbiology Ecology 29(2):117-128 [doi:10.1016/S0168-6496(98)00125-1]
1999Soberon, M, Lopez, O, Morera, C, Girard, MD, Tabche, ML, Miranda, J (1999) Enhanced nitrogen fixation in a Rhizobium etli ntrC mutant that overproduces the Bradyrhizobium japonicum symbiotic terminal oxidase cbb(3) Applied And Environmental Microbiology 65(5):2015-201910223993
1999Wang, ET, Martinez-Romero, J, Martinez-Romero, E (1999) Genetic diversity of rhizobia from Leucaena leucocephala nodules in Mexican soils MOLECULAR ECOLOGY 8(5):711-724 [doi:10.1046/j.1365-294X.1999.00608.x]
1999Brom Klanner, Susana, Romero Camarena, David René (1999) Plasmid biology 98: international symposium on plasmid biology Plasmid 41(2):141-17710087219
1999Corvera Poire, Adriana De La Concepción, Prome, D., Prome, J.C., Martínez Romero, María Esperanza, Romero Camarena, David René (1999) The nolL gene from Rhizobium etli determines nodulation efficiency by mediating the acetylation of the fucosyl residue in the nodulation factor Molecular Plant-Microbe Interactions 12(3):236-246 [doi:10.1094/MPMI.1999.12.3.236]10065560
1999Collado Vides, Pedro Julio, Hofestadt, R., Mavrovouniotis, M., Michal, G. (1999) Modeling and simulation of gene regulation and metabolic pathways Biosystems 49(1):79-82 [doi:10.1016/S0303-2647(98)00081-1]10091975
1999Salgado, H, Santos, A, Garza-Ramos, U, van Helden, J, Diaz, E, Collado-Vides, J (1999) RegulonDB (version 2.0): a database on transcriptional regulation in Escherichia coli Nucleic Acids Research 27(1):59-60 [doi:10.1093/nar/27.1.59]9847141
1999Caballero-Mellado, J, Martinez-Romero, E (1999) Soil fertilization limits the genetic diversity of Rhizobium in bean nodules Symbiosis 26(2):111-121
1999Wang, ET, van Berkum, P, Sui, XH, Beyene, D, Chen, WX, Martinez-Romero, E (1999) Diversity of Rhizobia associated with Amorpha fruticosa isolated from Chinese soils and description of Mesorhizobium amorphae sp nov INTERNATIONAL JOURNAL OF SYSTEMATIC BACTERIOLOGY 49(1):51-65 [doi:10.1099/00207713-49-1-51]10028247
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1998Flores, M, Mavingui, P, Girard, L, Perret, X, Broughton, WJ, Martinez-Romero, E, Davila, G, Palacios, R (1998) Three replicons of Rhizobium sp. strain NGR234 harbor symbiotic gene sequences Journal Of Bacteriology 180(22):6052-60539811668
1998Mandon, K, Michel-Reydellet, N, Encarnacion, S, Kaminski, PA, Leija, A, Cevallos, MA, Elmerich, C, Mora, J (1998) Poly-beta-hydroxybutyrate turnover in Azorhizobium caulinodans is required for growth and affects nifA expression Journal Of Bacteriology 180(19):5070-50769748438
1998Thieffry, D, Salgado, H, Huerta, AM, Collado-Vides, J (1998) Prediction of transcriptional regulatory sites in the complete genome sequence of Escherichia coli K-12 Bioinformatics 14(5):391-400 [doi:10.1093/bioinformatics/14.5.391]9682052
1998van Helden, J., Andre, B., Collado Vides, Pedro Julio (1998) Extracting regulatory sites from the upstream region of yeast genes by computational analysis of oligonucleotide frequencies Journal Of Molecular Biology 281(5):827-842 [doi:10.1006/jmbi.1998.1947]9719638
1998Encarnacion, S, Calderon, J, Gelbard, AS, Cooper, AJL, Mora, J (1998) Glutamine biosynthesis and the utilization of succinate and glutamine by Rhizobium etli and Sinorhizobium meliloti MICROBIOLOGY-SGM 144(9):2629-2638 [doi:10.1099/00221287-144-9-2629]9782512
1998Perez-Ramirez, NO, Rogel, MA, Wang, E, Castellanos, JZ, Martinez-Romero, E (1998) Seeds of Phaseolus vulgaris bean carry Rhizobium etli Fems Microbiology Ecology 26(4):289-296 [doi:10.1016/S0168-6496(98)00043-9]
1998Ludwig, W, Amann, R, Martinez-Romero, E, Schonhuber, W, Bauer, S, Neef, A, Schleifer, KH (1998) rRNA based identification and detection systems for rhizobia and other bacteria PLANT AND SOIL 204(1):1-19 [doi:10.1023/A:1004350708767]
1998Wang, ET, van Berkum, P., Beyene, D., Sui, X.H., Dorado, O., Chen, W.X., Martinez-Romero, E (1998) Rhizobium huautlense sp. nov., a symbiont of Sesbania herbacea that has a close phylogenetic relationship with Rhizobium galegae INTERNATIONAL JOURNAL OF SYSTEMATIC BACTERIOLOGY 48(3):687-699 [doi:10.1099/00207713-48-3-687]9734023
1998Vasquez-Arroyo, J, Sessitsch, A, Martinez, E, Pena-Cabriales, JJ (1998) Nitrogen fixation and nodule occupancy by native strains of Rhizobium on different cultivars of common bean (Phaseolus vulgaris L.) PLANT AND SOIL 204(1):147-154 [doi:10.1023/A:1004399531966]
1998Martinez-Romero, E, Hernandez-Lucas, I, Pena-Cabriales, JJ, Castellanos, JZ (1998) Symbiotic performance of some modified Rhizobium etli strains in assays with Phaseolus vulgaris beans that have a high capacity to fix N-2 PLANT AND SOIL 204(1):89-94 [doi:10.1023/A:1004383028331]
1998Hernandez-Sanchez, J, Valadez, JG, Herrera, JV, Ontiveros, C, Guarneros, G (1998) lambda bar minigene-mediated inhibition of protein synthesis involves accumulation of peptidyl-tRNA and starvation for tRNA EMBO JOURNAL 17(13):3758-3765 [doi:10.1093/emboj/17.13.3758]9649445
1998Rodriguez, C, Romero, D (1998) Multiple recombination events maintain sequence identity among members of the nitrogenase multigene family in Rhizobium etli Genetics 149(2):785-7949611191
1998Rosenblueth, M, Hynes, MF, Martinez-Romero, E (1998) Rhizobium tropici teu genes involved in specific uptake of Phaseolus vulgaris bean exudate compounds MOLECULAR & GENERAL GENETICS 258(6):587-598 [doi:10.1007/s004380050772]9671027
1998Dunn, MF (1998) Tricarboxylic acid cycle and anaplerotic enzymes in rhizobia Fems Microbiology Reviews 22(2):105-123 [doi:10.1111/j.1574-6976.1998.tb00363.x]9729766
1998Collado-Vides, J, Gutierrez-Rios, RM, Bel-Enguix, G (1998) Networks of transcriptional regulation encoded in a grammatical model Biosystems 47(1-2, SI):103-118 [doi:10.1016/S0303-2647(98)00016-1]9715754
1998Mavingui, P, Laeremans, T, Flores, M, Romero, D, Martinez-Romero, E, Palacios, R (1998) Genes essential for Nod factor production and nodulation are located on a symbiotic amplicon (AMPRtrCFN299pc60) in Rhizobium tropici Journal Of Bacteriology 180(11):2866-28749603874
1998Thieffry Jacot-Descombes, Denis Louis, Huerta Moreno, Araceli, Pérez Rueda, Ernesto, Collado Vides, Pedro Julio (1998) From specific gene regulation to genomic networks: a global analysis of transcriptional regulation in Escherichia coli Bioessays 20(5):433-440 <a target="_blank" href="http://dx.doi.org/10.1002/(SICI)1521-1878(199805)20:53.0.CO;2-2">[doi:10.1002/(SICI)1521-1878(199805)20:53.0.CO;2-2]9670816
1998Laeremans, T, Martinez-Romero, E, Vanderleyden, J (1998) Isolation and sequencing of a second Rhizobium tropici CFN299 genetic locus that contains genes homologous to amino acid sulphate activation genes Dna Sequence 9(1):65-70 [doi:10.3109/10425179809050027]9773278
1998Mendoza, A, Valderrama, B, Leija, A, Mora, J (1998) NifA-dependent expression of glutamate dehydrogenase in Rhizobium etli modifies nitrogen partitioning during symbiosis Molecular Plant-Microbe Interactions 11(2):83-90 [doi:10.1094/MPMI.1998.11.2.83]9450332
1998Pérez Rueda, Ernesto, Gralla, J.D., Collado Vides, Pedro Julio (1998) Genomic position analyses and the transcription machinery Journal Of Molecular Biology 275(2):165-170 [doi:10.1006/jmbi.1997.1465]9466899
1998Huerta, AM, Salgado, H, Thieffry, D, Collado-Vides, J (1998) RegulonDB: a database on transcriptional regulation in Escherichia coli Nucleic Acids Research 26(1):55-59 [doi:10.1093/nar/26.1.55]9399800
1997Dunn, MF, Araiza, G, Cevallos, MA, Mora, J (1997) Regulation of pyruvate carboxylase in Rhizobium etli Fems Microbiology Letters 157(2):301-306 [doi:10.1016/S0378-1097(97)00491-6]9435112
1997Laeremans, T, Coolsaet, N, Verreth, C, Snoeck, C, Hellings, N, Vanderleyden, J, Martinez-Romero, E (1997) Functional redundancy of genes for sulphate activation enzymes in Rhizobium sp. BR816 MICROBIOLOGY-SGM 143(12):3933-3942 [doi:10.1099/00221287-143-12-3933]9421916
1997MirandaRios, J, Morera, C, Taboada, H, Davalos, A, Encarnacion, S, Mora, J, Soberon, M (1997) Expression of thiamin biosynthetic genes (thiCOGE) and production of symbiotic terminal oxidase cbb(3), in Rhizobium etli Journal Of Bacteriology 179(22):6887-6893 [doi:10.1128/jb.179.22.6887-6893.1997]9371431
1997Barrera, LL, Trujillo, ME, Goodfellow, M, Garcia, FJ, HernandezLucas, I, Davila, G, vanBerkum, P, MartinezRomero, E (1997) Biodiversity of bradyrhizobia nodulating Lupinus spp. INTERNATIONAL JOURNAL OF SYSTEMATIC BACTERIOLOGY 47(4):1086-1091 [doi:10.1099/00207713-47-4-1086]9336911
1997Blattner, FR, Plunkett, G, Bloch, CA, Perna, NT, Burland, V, Riley, M, ColladoVides, J, Glasner, JD, Rode, CK, Mayhew, GF, Gregor, J, Davis, NW, Kirkpatrick, HA, Goeden, MA, Rose, DJ, Mau, B, Shao, Y (1997) The complete genome sequence of Escherichia coli K-12 Science 277(5331):1453-1462 [doi:10.1126/science.277.5331.1453]9278503
1997GarciadelosSantos, A, Brom, S (1997) Characterization of two plasmid-borne lps beta loci of Rhizobium etli required for lipopolysaccharide synthesis and for optimal interaction with plants Molecular Plant-Microbe Interactions 10(7):891-902 [doi:10.1094/MPMI.1997.10.7.891]9304861
1997Hernandez, J, Ontiveros, C, Valadez, JG, Buckingham, RH, Guarneros, G (1997) Regulation of protein synthesis by minigene expression Biochimie 79(8):527-531 [doi:10.1016/S0300-9084(97)82746-0]9451455
1997Jiménez-Salgado, T., FuentesRamirez, LE, Tapia-Hernández, A., Mascarua-Esparza, M.A., MartinezRomero, E, CaballeroMellado, J (1997) Coffea arabica L., a new host plant for Acetobacter diazotrophicus, and isolation of other nitrogen-fixing acetobacteria Applied And Environmental Microbiology 63(9):3676-36839293018
1997RamirezRomero, MA, Bustos, P, Girard, L, Rodriguez, O, Cevallos, MA, Davila, G (1997) Sequence, localization and characteristics of the replicator region of the symbiotic plasmid of Rhizobium etli MICROBIOLOGY-SGM 143(8):2825-2831 [doi:10.1099/00221287-143-8-2825]9274036
1997Chichkova, S, Arellano, J, Svoboda, S, Hernandez, G (1997) Ectopic overexpression of NADH-glutamate synthase in transgenic tobacco modifies plant response to excess of ammonium. Plant Physiology 114(3, S):911-911
1997Tan, Z.Y., Xu, X.D., Wang, E.T., Gag, J.L., MartinezRomero, E, Chen, W.X. (1997) Phylogenetic and genetic relationships of Mesorhizobium tianshanense and related rhizobia INTERNATIONAL JOURNAL OF SYSTEMATIC BACTERIOLOGY 47(3):874-879 [doi:10.1099/00207713-47-3-874]9226921
1997Ontiveros, C, Valadez, JG, Hernandez, J, Guarneros, G (1997) Inhibition of Escherichia coli protein synthesis by abortive translation of phage lambda minigenes Journal Of Molecular Biology 269(2):167-175 [doi:10.1006/jmbi.1997.1017]9191062
1997Mavingui Malonda, Aime Dieudonne Patrick, Flores López, Margarita, Romero Camarena, David René, Martínez Romero, María Esperanza, Palacios de la Lama, Rafael (1997) Generation of Rhizobium strains with improved symbiotic properties by random DNA amplification (RDA) Nature Biotechnology 15(6):564-569 [doi:10.1038/nbt0697-564]9181580
1997Calderón, J., Olvera, L, Martinez, LM, Davila, G (1997) A Neurospora crassa mutant altered in the regulation of L-amino acid oxidase MICROBIOLOGY-SGM 143(6):1969-1974 [doi:10.1099/00221287-143-6-1969]9202472
1997AguilarGaytan, R, Cerbon, MA, Cevallos, MA, Lizano, M, Huberman, A (1997) Sequence of a cDNA encoding the molt-inhibiting hormone from the Mexican crayfish Procambarus bouvieri (Crustacea, Decapoda) ASIA-PACIFIC JOURNAL OF MOLECULAR BIOLOGY AND BIOTECHNOLOGY 5(1):51-55
1997Romero Camarena, David René, Palacios de la Lama, Rafael (1997) Gene amplification and genomic plasticity in prokaryotes ANNUAL REVIEW OF GENETICS 31():91-111 [doi:10.1146/annurev.genet.31.1.91]9442891
1997Thieffry Jacot-Descombes, Denis Louis, Rosenblueth, D.A., Huerta Moreno, Araceli, Salgado Osorio, Heladia, Collado Vides, Pedro Julio (1997) Definite-clause grammars for the analysis of cis-regulatory regions in E. coli. Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing ():441-4529390313
1997Collado-Vides, J, Huerta, AM, Klose, K (1997) Three models of gene regulation in E-coli LECT NOTES COMPUT SC 1278():72-78
1997Thieffry, D (1997) Contributions of the ''Rouge-Cloitre group'' to the notion of ''messenger RNA'' HISTORY AND PHILOSOPHY OF THE LIFE SCIENCES 19(1):89-1119284644
1996ColladoVides, J (1996) Towards a unified grammatical model of sigma 70 and sigma 54 bacterial promoters Biochimie 78(5):351-363 [doi:10.1016/0300-9084(96)84767-5]8905154
1996Rosenblueth, DA, Thieffry, D, Huerta, AM, Salgado, H, ColladoVides, J (1996) Syntactic recognition of regulatory regions in Escherichia coli COMPUTER APPLICATIONS IN THE BIOSCIENCES 12(5):415-4228996790
1996Pérez Oseguera, María de los Angeles, GUERECA, LEOPOLDO (1996) Acceptor Reactions of Levansucrase from Bacillus circulans. Enzyme Eng. XIII Annals. New York Academy of Science. Acceptor Reactions of Levansucrase from Bacillus circulans Vol 799():743-746
1996Girard, L, Valderrama, B, Palacios, R, Romero, D, Davila, G (1996) Transcriptional activity of the symbiotic plasmid of Rhizobium etli is affected by different environmental conditions MICROBIOLOGY-SGM 142(10):2847-2856 [doi:10.1099/13500872-142-10-2847]
1996Dunn, MF, Encarnacion, S, Araiza, G, Vargas, MC, Davalos, A, Peralta, H, Mora, Y, Mora, J (1996) Pyruvate carboxylase from Rhizobium etli: Mutant characterization, nucleotide sequence, and physiological role Journal Of Bacteriology 178(20):5960-5970 [doi:10.1128/jb.178.20.5960-5970.1996]8830693
1996Laeremans, T., Caluwaerts, I., Verreth, C., Rogel Hernández, Marco Antonio, Vanderleyden, J., Martínez Romero, María Esperanza (1996) Isolation and characterization of the Rhizobium tropici Nod factor sulfation genes Molecular Plant-Microbe Interactions 9(6):492-500 [doi:10.1094/MPMI-9-0492]8755625
1996Valderrama, B, Davalos, A, Girard, L, Morett, E, Mora, J (1996) Regulatory proteins and cis-acting elements involved in the transcriptional control of Rhizobium etli reiterated nifH genes Journal Of Bacteriology 178(11):3119-3126 [doi:10.1128/jb.178.11.3119-3126.1996]8655489
1996Taboada, H, Encarnacion, S, Vargas, MD, Mora, Y, MartinezRomero, E, Mora, J (1996) Glutamine synthetase II constitutes a novel taxonomic marker in Rhizobium etli and other Rhizobium species INTERNATIONAL JOURNAL OF SYSTEMATIC BACTERIOLOGY 46(2):485-491 [doi:10.1099/00207713-46-2-485]
1996Hofestadt, R., Mavrovouniotis, M., Collado Vides, Pedro Julio, Loffler, M. (1996) Modeling and simulation of metabolic pathways, gene regulation and cell differentiation - October 22-27, 1995. International Conference and Research Center for Computer Science, Schloss Dagstuhl, Saarland, Germany Bioessays 18(4):333-335 [doi:10.1002/bies.950180412]8967902
1996Arellano, J, Vazquez, F, Villegas, T, Hernandez, G (1996) Establishment of transformed root cultures of Perezia cuernavacana producing the sesquiterpene quinone perezone PLANT CELL REPORTS 15(7):455-45824178452
1996Cevallos, MA, Encarnacion, S, Leija, A, Mora, Y, Mora, J (1996) Genetic and physiological characterization of a Rhizobium etli mutant strain unable to synthesize poly-beta-hydroxybutyrate Journal Of Bacteriology 178(6):1646-1654 [doi:10.1128/jb.178.6.1646-1654.1996]8626293
1996Thieffry, D, Burian, RM (1996) Jean Brachet's alternative scheme for protein synthesis TRENDS IN BIOCHEMICAL SCIENCES 21(3):114-117 [doi:10.1016/S0968-0004(96)10015-3]8882586
1996Santos, AGD, Brom, S, Romero, D (1996) Rhizobium plasmids in bacteria legume interactions World Journal Of Microbiology & Biotechnology 12(2):119-12524415159
1996De La Vega, F.M., Galindo, J.M., Old, L.G., Guarneros, G (1996) Microbial genes homologous to the peptidyl-tRNA hydrolase-encoding gene of Escherichia coli Gene 169(1):97-100 [doi:10.1016/0378-1119(95)00823-3]8635758
1996Thieffry, D (1996) Escherichia coli as a model system with which to study cell differentiation HISTORY AND PHILOSOPHY OF THE LIFE SCIENCES 18(2):163-1939122371
1996MartinezRomero, E, CaballeroMellado, J (1996) Rhizobium phylogenies and bacterial genetic diversity CRITICAL REVIEWS IN PLANT SCIENCES 15(2):113-140 [doi:10.1080/713608131]
1995HERNANDEZLUCAS, I, PARDO, MA, SEGOVIA, L, MIRANDA, J, MARTINEZROMERO, E (1995) RHIZOBIUM TROPICI CHROMOSOMAL CITRATE SYNTHASE GENE Applied And Environmental Microbiology 61(11):3992-39978526514
1995CABALLEROMELLADO, J, FUENTESRAMIREZ, LE, REIS, VM, MARTINEZROMERO, E (1995) GENETIC-STRUCTURE OF ACETOBACTER-DIAZOTROPHICUS POPULATIONS AND IDENTIFICATION OF A NEW GENETICALLY DISTANT GROUP Applied And Environmental Microbiology 61(8):3008-301316535102
1995Poupot, R., Martínez Romero, María Esperanza, Maillet, F., Promé, J.C. (1995) RHIZOBIUM TROPICI NODULATION FACTOR SULFATION IS LIMITED BY THE QUANTITY OF ACTIVATED FORM OF SULFATE FEBS LETTERS 368(3):536-540 [doi:10.1016/0014-5793(95)00737-T]7635216
1995HERNANDEZ, G, RAMIREZ, M, SUAREZ, R, FUENTES, SI (1995) ROOT EXUDED NOD-GENE INDUCING SIGNALS LIMIT THE NODULATION CAPACITY OF DIFFERENT ALFALFA VARIETIES WITH RHIZOBIUM-MELILOTI PLANT CELL REPORTS 14(10):626-629 [doi:10.1007/BF00232726]24194309
1995Mendoza Herrera, Alberto, Leija Salas, Alfonso, Martínez Romero, María Esperanza, Hernández Delgado, Georgina, Mora Celis, Jaime (1995) THE ENHANCEMENT OF AMMONIUM ASSIMILATION IN RHIZOBIUM-ETLI PREVENTS NODULATION OF PHASEOLUS-VULGARIS Molecular Plant-Microbe Interactions 8(4):584-592 [doi:10.1094/MPMI-8-0584]8589413
1995HERNANDEZLUCAS, I, SEGOVIA, L, MARTINEZROMERO, E, PUEPPKE, SG (1995) PHYLOGENETIC-RELATIONSHIPS AND HOST-RANGE OF RHIZOBIUM SPP THAT NODULATE PHASEOLUS-VULGARIS L Applied And Environmental Microbiology 61(7):2775-27797618891
1995Toledo García, Icela Ivonne, Rangel, P., Hansberg, W. (1995) REDOX IMBALANCE AT THE START OF EACH MORPHOGENETIC STEP OF NEUROSPORA-CRASSA CONIDIATION ARCHIVES OF BIOCHEMISTRY AND BIOPHYSICS 319(2):519-524 [doi:10.1006/abbi.1995.1326]7786037
1995ENCARNACION, S, DUNN, M, WILLMS, K, MORA, J (1995) FERMENTATIVE AND AEROBIC METABOLISM IN RHIZOBIUM-ETLI Journal Of Bacteriology 177(11):3058-3066 [doi:10.1128/jb.177.11.3058-3066.1995]7768801
1995LOHRKE, SM, ORF, JH, MARTINEZROMERO, E, SADOWSKY, MJ (1995) HOST-CONTROLLED RESTRICTION OF NODULATION BY BRADYRHIZOBIUM-JAPONICUM STRAINS IN SEROGROUP-110 Applied And Environmental Microbiology 61(6):2378-238316535054
1995BARRIOS, H, Fischer, H.M., Hennecke, H., MORETT, E (1995) OVERLAPPING PROMOTERS FOR 2 DIFFERENT RNA-POLYMERASE HOLOENZYMES CONTROL BRADYRHIZOBIUM-JAPONICUM NIFA EXPRESSION Journal Of Bacteriology 177(7):1760-1765 [doi:10.1128/jb.177.7.1760-1765.1995]7896698
1995GENIAUX, E, FLORES, M, PALACIOS, R, MARTINEZ, E (1995) PRESENCE OF MEGAPLASMIDS IN RHIZOBIUM-TROPICI AND FURTHER EVIDENCE OF DIFFERENCES BETWEEN THE 2 R-TROPICI SUBTYPES INTERNATIONAL JOURNAL OF SYSTEMATIC BACTERIOLOGY 45(2):392-394 [doi:10.1099/00207713-45-2-392]
1995POUPOT, R, MARTINEZROMERO, E, GAUTIER, N, PROME, JC (1995) WILD-TYPE RHIZOBIUM-ETLI, A BEAN SYMBIONT, PRODUCES ACETYL-FUCOSYLATED, N-METHYLATED, AND CARBAMOYLATED NODULATION FACTORS Journal Of Biological Chemistry 270(11):6050-6055 [doi:10.1074/jbc.270.11.6050]7890737
1995DURAN, S, CALDERON, J (1995) ROLE OF THE GLUTAMINE TRANSAMINASE-OMEGA-AMIDASE PATHWAY AND GLUTAMINASE IN GLUTAMINE DEGRADATION IN RHIZOBIUM-ETLI MICROBIOLOGY-SGM 141(3):589-595 [doi:10.1099/13500872-141-3-589]
1995ROMERO, D, MARTINEZSALAZAR, J, GIRARD, L, BROM, S, DAVILA, G, PALACIOS, R, FLORES, M, RODRIGUEZ, C (1995) DISCRETE AMPLIFIABLE REGIONS (AMPLICONS) IN THE SYMBIOTIC PLASMID OF RHIZOBIUM-ETLI CFN42 Journal Of Bacteriology 177(4):973-980 [doi:10.1128/jb.177.4.973-980.1995]7860608
1995Peralta Díaz, Humberto, CALDERON JIMENEZ, JORGE, DU PONT, GISELA, DURAN, SOCORRO, HUERTA SAQUERO, ALEJANDRA (1995) El metabolismo de nitrógeno y carbono en Rhizobium en vida libre y en simbiosis con leguminosas. Biotecnologia Aplicada 3(5):208-223
1994TOLEDO, I, AGUIRRE, J, HANSBERG, W (1994) ENZYME INACTIVATION RELATED TO A HYPEROXIDANT STATE DURING CONIDIATION OF NEUROSPORA-CRASSA MICROBIOLOGY-SGM 140(9):2391-2397 [doi:10.1099/13500872-140-9-2391]7952190
1994ROMANOV, VI, HERNANDEZLUCAS, I, MARTINEZROMERO, E (1994) CARBON METABOLISM ENZYMES OF RHIZOBIUM-TROPICI CULTURES AND BACTEROIDS Applied And Environmental Microbiology 60(7):2339-234216349319
1994CABALLEROMELLADO, J, MARTINEZROMERO, E (1994) LIMITED GENETIC DIVERSITY IN THE ENDOPHYTIC SUGARCANE BACTERIUM ACETOBACTER-DIAZOTROPHICUS Applied And Environmental Microbiology 60(5):1532-153716349254
1994MARTINEZROMERO, E (1994) RECENT DEVELOPMENTS IN RHIZOBIUM TAXONOMY PLANT AND SOIL 161(1):11-20 [doi:10.1007/BF02183081]
1994ROMANOV, VI, MARTINEZROMERO, E (1994) SUCROSE TRANSPORT AND HYDROLYSIS IN RHIZOBIUM-TROPICI PLANT AND SOIL 161(1):91-96 [doi:10.1007/BF02183088]
1994GRAHAM, PH, DRAEGER, KJ, FERREY, ML, CONROY, MJ, HAMMER, BE, MARTINEZ, E, AARONS, SR, QUINTO, C (1994) ACID PH TOLERANCE IN STRAINS OF RHIZOBIUM AND BRADYRHIZOBIUM, AND INITIAL STUDIES ON THE BASIS FOR ACID TOLERANCE OF RHIZOBIUM-TROPICI UMR1899 Canadian Journal Of Microbiology 40(3):198-207 [doi:10.1139/m94-033]
1994PARDO, MA, LAGUNEZ, J, MIRANDA, J, MARTINEZ, E (1994) NODULATING ABILITY OF RHIZOBIUM-TROPICI IS CONDITIONED BY A PLASMID-ENCODED CITRATE SYNTHASE Molecular Microbiology 11(2):315-321 [doi:10.1111/j.1365-2958.1994.tb00311.x]8170393
1993POUPOT, R, MARTINEZROMERO, E, PROME, JC (1993) NODULATION FACTORS FROM RHIZOBIUM-TROPICI ARE SULFATED OR NONSULFATED CHITOPENTASACCHARIDES CONTAINING AN N-METHYL-N-ACYLGLUCOSAMINYL TERMINUS Biochemistry 32(39):10430-10435 [doi:10.1021/bi00090a019]8399187
1993CALDERON, J, MARTINEZ, LM (1993) REGULATION OF AMMONIUM ION ASSIMILATION ENZYMES IN NEUROSPORA-CRASSA NIT-2 AND MS-5 MUTANT STRAINS BIOCHEMICAL GENETICS 31(9-10):425-439 [doi:10.1007/BF00553459]7907211
1993MORETT, E, SEGOVIA, L (1993) THE SIGMA(54) BACTERIAL ENHANCER-BINDING PROTEIN FAMILY - MECHANISM OF ACTION AND PHYLOGENETIC RELATIONSHIP OF THEIR FUNCTIONAL DOMAINS Journal Of Bacteriology 175(19):6067-6074 [doi:10.1128/jb.175.19.6067-6074.1993]8407777
1993FUENTES, SI, SUAREZ, R, VILLEGAS, T, ACERO, LC, HERNANDEZ, G (1993) EMBRYOGENIC RESPONSE OF MEXICAN ALFALFA (MEDICAGO-SATIVA) VARIETIES Plant Cell Tissue And Organ Culture 34(3):299-302 [doi:10.1007/BF00029720]
1993Collado Vides, Pedro Julio (1993) THE ELEMENTS FOR A CLASSIFICATION OF UNITS OF GENETIC INFORMATION WITH A COMBINATORIAL COMPONENT JOURNAL OF THEORETICAL BIOLOGY 163(4):527-548 [doi:10.1006/jtbi.1993.1136]8246512
1993Flores López, Margarita, Brom Klanner, Susana, Stepkowsky, Tomász, Girard Cuesy, María de Lourdes, Dávila Ramos, José Guillermo, Romero Camarena, David René, Palacios de la Lama, Rafael (1993) GENE AMPLIFICATION IN RHIZOBIUM - IDENTIFICATION AND INVIVO CLONING OF DISCRETE AMPLIFIABLE DNA REGIONS (AMPLICONS) FROM RHIZOBIUM-LEGUMINOSARUM BIOVAR PHASEOLI PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA 90(11):4932-4936 [doi:10.1073/pnas.90.11.4932]8506337
1993Segovia, L., Young, J.P.W., MartinezRomero, E (1993) RECLASSIFICATION OF AMERICAN RHIZOBIUM-LEGUMINOSARUM BIOVAR PHASEOLI TYPE-I STRAINS AS RHIZOBIUM-ETLI SP-NOV INTERNATIONAL JOURNAL OF SYSTEMATIC BACTERIOLOGY 43(2):374-377 [doi:10.1099/00207713-43-2-374]8494746
1993COLLADOVIDES, J (1993) A LINGUISTIC REPRESENTATION OF THE REGULATION OF TRANSCRIPTION INITIATION .1. AN ORDERED ARRAY OF COMPLEX SYMBOLS WITH DISTINCTIVE FEATURES Biosystems 29(2-3):87-104 [doi:10.1016/0303-2647(93)90086-R]8374070
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