Luis José Muñíz Rascado

Computational Genomics Support staff

UNAM

Academic history

Links

Scopus

Telephone: (777) 3132063
Email: ljmuniz@ccg.unam.mx

Publications

YearPublicationPMID
2019Santos-Zavaleta, A, Salgado, H, Gama-Castro, S, Sánchez-Pérez, M., Gómez-Romero, L., Ledezma-Tejeida, D., García-Sotelo, J.S., Alquicira-Hernández, K, Muñíz-Rascado, L, Peña-Loredo, P., Ishida-Gutiérrez, C., Velázquez-Ramírez, D.A., Del Moral-Chávez, V, Bonavides-Martínez, C, Méndez-Cruz, CF, Galagan, J. and Collado-Vides, J. (2019). "RegulonDB v 10.5: tackling challenges to unify classic and high throughput knowledge of gene regulation in E. coli K-12". Nucleic Acids Research. 47(D1):212-220. [doi:10.1093/nar/gky1077]30395280
2017Keseler IM, Mackie A, Santos-Zavaleta, A, Billington R, Bonavides-Martínez, C, Caspi R, Fulcher C, Gama-Castro, S, Kothari A, Krummenacker M, Latendresse M, Muñíz-Rascado, L, Ong Q, Paley S, Peralta-Gil M, Subhraveti P, Velázquez-Ramírez DA, Weaver D, Collado-Vides, J, Paulsen I and Karp PD. (2017). "The EcoCyc database: Reflecting new knowledge about Escherichia coli K-12". Nucleic Acids Research. 45(D1):543-550. [doi:10.1093/nar/gkw1003]27899573
2017Méndez-Cruz, CF, Gama-Castro, S, Mejía-Almonte C, Castillo-Villalba MP, Muñíz-Rascado, L and Collado-Vides, J. (2017). "First steps in automatic summarization of transcription factor properties for RegulonDB: classification of sentences about structural domains and regulated processes". DATABASE-THE JOURNAL OF BIOLOGICAL DATABASES AND CURATION. 2017():-. [doi:10.1093/database/bax070]29220462
2016Gama-Castro, S, Salgado, H, Santos-Zavaleta, A, Ledezma-Tejeida, D., Muñíz-Rascado, L, García-Sotelo, J.S., Alquicira-Hernández, K, Martínez-Flores, I, Pannier, L., Castro-Mondragón, J.A., Medina-Rivera, A., Solano-Lira, H., Bonavides-Martínez, C, Pérez-Rueda, E., Alquicira-Hernández, S, Porrón-Sotelo, L., López-Fuentes, A, Hernández-Koutoucheva, A., Del Moral-Chávez, V, Rinaldi, F. and Collado-Vides, J. (2016). "RegulonDB version 9.0: High-level integration of gene regulation, coexpression, motif clustering and beyond". Nucleic Acids Research. 44(D1):133-143. [doi:10.1093/nar/gkv1156]26527724
2013Salgado, H, Peralta Gil, Martín, Gama-Castro, S, Santos-Zavaleta, A, Muñíz-Rascado, L, Garcia Sotelo, Jair Santiago, Weiss, V., Solano Lira, Hilda, Martínez-Flores, I, Medina Rivera, Alejandra Eugenia, Salgado Osorio, Gerardo, Alquicira-Hernández, S, Alquicira-Hernández, K, López-Fuentes, A, Porrón Sotelo, Liliana, Huerta Moreno, Araceli, Bonavides-Martínez, C, Balderas MartÍnez, Yalbi Itzel, Pannier, Lucia, Olvera, M., Labastida, A., Jiménez-Jacinto, V., Vega-Alvarado, L., Del Moral-Chávez, V, Hérnandez-Álvarez, A, Morett, E. and Collado-Vides, J. (2013). "RegulonDB v8.0: Omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more". Nucleic Acids Research. 41(D1):203-213. [doi:10.1093/nar/gks1201]23203884
2013Keseler, I.M., Mackie, A., Peralta Gil, Martín, Santos-Zavaleta, A, Gama-Castro, S, Bonavides-Martínez, C, Fulcher, C., Huerta Moreno, Araceli, Kothari, A., Krummenacker, M., Latendresse, M., Muñíz-Rascado, L, Ong, Q., Paley, S., Schroder, I., Shearer, A.G., Subhraveti, P., Travers, M., Weerasinghe, D., Weiss, V., Collado-Vides, J, Gunsalus, R.P., Paulsen, I. and Karp, P.D.. (2013). "EcoCyc: Fusing model organism databases with systems biology". Nucleic Acids Research. 41(D1):605-612. [doi:10.1093/nar/gks1027]23143106
2011Gama-Castro, S, Salgado, H, Peralta Gil, Martín, Santos-Zavaleta, A, Muñíz-Rascado, L, Solano Lira, Hilda, Jimenez-Jacinto, V., Weiss, V., Garcia Sotelo, Jair Santiago, López-Fuentes, A, Porrón Sotelo, Liliana, Alquicira-Hernández, S, Medina Rivera, Alejandra Eugenia, Martínez-Flores, I, Alquicira-Hernández, K, Martínez Adame, Ruth, Bonavides-Martínez, C, Miranda-Ríos, J., Huerta Moreno, Araceli, Mendoza-Vargas, A., Collado Torres, Leonardo, Taboada, B., Vega-Alvarado, L., Olvera, M., Olvera, L., Grande, R., Morett, E. and Collado-Vides, J. (2011). "RegulonDB version 7.0: Transcriptional regulation of Escherichia coli K-12 integrated within genetic sensory response units (Gensor Units)". Nucleic Acids Research. 39(SUPPL. 1):98-105. [doi:10.1093/nar/gkq1110]21051347
2011Keseler, I.M., Collado-Vides, J, Santos-Zavaleta, A, Peralta Gil, Martín, Gama-Castro, S, Muñíz-Rascado, L, Bonavides-Martínez, C, Paley, S., Krummenacker, M., Altman, T., Spaulding, A., Spaulding, A., Pacheco, J., Latendresse, M., Fulcher, C., Sarker, M., Shearer, A.G., Mackie, A., Paulsen, I., Gunsalus, R.P. and Karp, P.D.. (2011). "EcoCyc: A comprehensive database of Escherichia coli biology". Nucleic Acids Research. 39(SUPPL. 1):583-590. [doi:10.1093/nar/gkq1143]21097882
2011Salgado, H, Martínez-Flores, I, López-Fuentes, A, Garcia Sotelo, Jair Santiago, Porrón Sotelo, Liliana, Muñíz-Rascado, L and Collado-Vides, J. (2011). "Extracting regulatory networks of/Escherichia coli/from RegulonDB". Bacterial Molecular Networks: Methods and Protocols. ():-.
2010Salgado, H, López-Fuentes, A, Martínez-Flores, I, Garcia Sotelo, Jair Santiago, Porrón Sotelo, Liliana, Solano Lira, Hilda, Muñíz-Rascado, L and Collado-Vides, J. (2010). "Extracting regulatory networks of Escherichia coli from RegulonDB". Bacterial Molecular Networks: Methods and Protocols. ():-.
2009Collado-Vides, J, Salgado, H, Morett, Enrique, Gama-Castro, S, Jimenez-Jacinto, Veronica, Martínez-Flores, I, Medina-Rivera, Alejandra, Muñíz-Rascado, L, Peralta-Gil, Martin and Santos-Zavaleta, A. (2009). "Bioinformatics resources for the study of gene regulation in bacteria". Journal Of Bacteriology. 91(1):23-31. [doi:10.1128/JB.01017-08]18978060
2008Gama-Castro, S, Jiménez Jacinto, Verónica, Peralta Gil, Martín, Santos-Zavaleta, A, Peñaloza Spinola, Mónica Ivonne, Contreras Moreira, Bruno, Segura Salazar, Juan, Muñíz-Rascado, L, Martínez-Flores, I, Salgado, H, Bonavides-Martínez, C, Abreu Goodger, Cei Leander Gastón, Rodríguez Penagos, Carlos, Miranda-Ríos, J., Morett Sánchez, Juan Enrique, Merino, E., Huerta Moreno, Araceli, Treviño Quintanilla, Luis Gerardo and Collado-Vides, J. (2008). "RegulonDB (version 6.0): Gene regulation model of Escherichia coli K-12 beyond transcription, active (experimental) annotated promoters and Textpresso navigation". Nucleic Acids Research. 36(SUPPL. 1):120-124. [doi:10.1093/nar/gkm994]18158297
2017Rinaldi F, Lithgow O, Gama-Castro, S, Solano H, López-Fuentes, A, Muñíz-Rascado, L, Ishida-Gutiérrez C, Méndez-Cruz, CF and Collado-Vides, J. (2017). "Strategies towards digital and semi-automated curation in RegulonDB". DATABASE-THE JOURNAL OF BIOLOGICAL DATABASES AND CURATION. 2017(1):bax012-. [doi:10.1093/database/bax012]28365731
2012Salgado, H, Martínez-Flores, I, López-Fuentes, A, Garcia Sotelo, Jair Santiago, Porrón Sotelo, Liliana, Muñíz-Rascado, L and Collado-Vides, J. (2012). "Extracting regulatory networks of Escherichia coli from RegulonDB". Methods in Molecular Biology. 804():179-195. [doi:10.1007/978-1-61779-361-5_10]22144154