Irma Martínez Flores

Evolutionary Genomics Laboratory Technician

Laboratory Technician

Academic history

Links

Scopus

Telephone: (777) 3133881
Email: imartflo@ccg.unam.mx

Publications

YearPublicationPMID
2017Perez-Morales, Deyanira, Banda, Maria M., Elizabeth Chau, N. Y., Salgado, Heladia, Martinez-Flores, Irma, Antonio Ibarra, J., Ilyas, Bushra, Coombes, Brian K., Bustamante, Victor H. (2017) The transcriptional regulator SsrB is involved in a molecular switch controlling virulence lifestyles of Salmonella PLOS PATHOGENS 13(7):e1006497- [doi:10.1371/journal.ppat.1006497]28704543
2016Gama-Castro, S., Salgado, H., Santos-Zavaleta, A., Ledezma-Tejeida, D., Muñiz-Rascado, L., García-Sotelo, J.S., Alquicira-Hernández, K., Martínez-Flores, I., Pannier, L., Castro-Mondragón, J.A., Medina-Rivera, A., Solano-Lira, H., Bonavides-Martínez, C., Pérez-Rueda, E., Alquicira-Hernández, S., Porrón-Sotelo, L., López-Fuentes, A., Hernández-Koutoucheva, A., Del Moral-Chavez, V., Rinaldi, F., Collado-Vides, J. (2016) RegulonDB version 9.0: High-level integration of gene regulation, coexpression, motif clustering and beyond Nucleic Acids Research 44(D1):133-143 [doi:10.1093/nar/gkv1156]26527724
2014Martinez, L.C., Martínez Flores, Irma, Salgado Osorio, Heladia, Fernández-Mora, M., Medina Rivera, Alejandra Eugenia, Puente, J.L., Collado Vides, Pedro Julio, Bustamante, V.H. (2014) In Silico Identification and Experimental Characterization of Regulatory Elements Controlling the Expression of the Salmonella csrB and csrC Genes Journal Of Bacteriology 196(2):325-336 [doi:10.1128/JB.00806-13]24187088
2013Gerardo Trevino-Quintanilla, Luis, Augusto Freyre-Gonzalez, Julio, Martinez-Flores, Irma (2013) Anti-Sigma Factors in E-coli: Common Regulatory Mechanisms Controlling Sigma Factors Availability Current Genomics 14(6):378-387 [doi:10.2174/1389202911314060007]24396271
2013Salgado Osorio, Heladia, Peralta Gil, Martín, Gama Castro, MA. DEL SOCORRO, Santos Zavaleta, Alberto, Muñíz Rascado, Luis José, Garcia Sotelo, Jair Santiago, Weiss, V., Solano Lira, Hilda, Martínez Flores, Irma, Medina Rivera, Alejandra Eugenia, Salgado Osorio, Gerardo, Alquicira Hernández, Shirley, Alquicira Hernández, Kevin, López Fuentes, Alejandra Cristina, Porrón Sotelo, Liliana, Huerta Moreno, Araceli, Bonavides Martínez, César Augusto, Balderas MartÍnez, Yalbi Itzel, Pannier, Lucia, Olvera, M., Labastida, A., Jiménez-Jacinto, V., Vega-Alvarado, L., del Moral Chávez, Victor Manuel, Hernández Álvarez, Alfredo José, Morett, E., Collado Vides, Pedro Julio (2013) RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more Nucleic Acids Research 41(D1):203-213 [doi:10.1093/nar/gks1201]23203884
2011Salgado Osorio, Heladia, Martínez Flores, Irma, López Fuentes, Alejandra Cristina, Garcia Sotelo, Jair Santiago, Porrón Sotelo, Liliana, Muñíz Rascado, Luis José, Collado Vides, Pedro Julio (2011) Extracting regulatory networks of/Escherichia coli/from RegulonDB Bacterial Molecular Networks: Methods and Protocols ():-
2011Gama Castro, MA. DEL SOCORRO, Salgado Osorio, Heladia, Peralta Gil, Martín, Santos Zavaleta, Alberto, Muñíz Rascado, Luis José, Solano Lira, Hilda, Jimenez-Jacinto, V., Weiss, V., Garcia Sotelo, Jair Santiago, López Fuentes, Alejandra Cristina, Porrón Sotelo, Liliana, Alquicira Hernández, Shirley, Medina Rivera, Alejandra Eugenia, Martínez Flores, Irma, Alquicira Hernández, Kevin, Martínez Adame, Ruth, Bonavides Martínez, César Augusto, Miranda-Ríos, J., Huerta Moreno, Araceli, Mendoza-Vargas, A., Collado Torres, Leonardo, Taboada, B., Vega-Alvarado, L., Olvera, M., Olvera, L., Grande, R., Morett, E., Collado Vides, Pedro Julio (2011) RegulonDB version 7.0: transcriptional regulation of Escherichia coli K-12 integrated within genetic sensory response units (Gensor Units) Nucleic Acids Research 39(1):98-105 [doi:10.1093/nar/gkq1110]21051347
2010Demir, E., Cary, M.P., Paley, S., Fukuda, K., Lemer, C., Vastrik, I., Wu, G.N., D Eustachio, P., Schaefer, C., Luciano, J., Schacherer, F., Martínez Flores, Irma, Hu, Z.J., Jiménez-Jacinto, V., Joshi-Tope, G., Kandasamy, K., López-Fuentes, A.C., Mi, H.Y., Pichler, E., Rodchenkov, I., Splendiani, A., Tkachev, S., Zucker, J., Gopinath, G., Rajasimha, H., Ramakrishnan, R., Shah, I., Syed, M., Anwar, N., Babur, O., Blinov, M., Brauner, E., Corwin, D., Donaldson, S., Gibbons, F., Goldberg, R., Hornbeck, P., Luna, A., Murray-Rust, P., Neumann, E., Reubenacker, O., Samwald, M., van Iersel, M., Wimalaratne, S., Allen, K., Braun, B., Whirl-Carrillo, M., Cheung, K.H., Dahlquist, K., Finney, A., Gillespie, M., Glass, E., Gong, L., Haw, R., Honig, M., Hubaut, O., Kane, D., Krupa, S., Kutmon, M., Leonard, J., Marks, D., Merberg, D., Petri, V., Pico, A., Ravenscroft, D., Ren L.Y., Shah, N., Sunshine, M., Tang, R., Whaley, R., Letovksy, S., Buetow, K.H., Rzhetsky, A., Schachter, V., Sobral, B., Dogrusoz, U., McWeeney, S., Aladjem, M., Birney, E., Collado Vides, Pedro Julio, Goto, S., Hucka, M., Le Novere, N., Maltsev, N., Pandey, A., Thomas, P., Wingender, E., Karp, P.D., Sander, C., Bader, G.D. (2010) The BioPAX community standard for pathway data sharing Nature Biotechnology 28(9):935-942 [doi:10.1038/nbt.1666]20829833
2010Salgado Osorio, Heladia, López Fuentes, Alejandra Cristina, Martínez Flores, Irma, Garcia Sotelo, Jair Santiago, Porrón Sotelo, Liliana, Solano Lira, Hilda, Muñíz Rascado, Luis José, Collado Vides, Pedro Julio (2010) Extracting regulatory networks of Escherichia coli from RegulonDB Bacterial Molecular Networks: Methods and Protocols ():-
2010Martínez Flores, Irma, Jiménez-Jacinto, V., López Fuentes, Alejandra Cristina, Collado Vides, Pedro Julio (2010) Expanding BioPAX format by integrating Gene Regulation EMBnet.journal 16():39-43
2009Collado-Vides, Julio, Salgado, Heladia, Morett, Enrique, Gama-Castro, Socorro, Jimenez-Jacinto, Veronica, Martinez-Flores, Irma, Medina-Rivera, Alejandra, Muniz-Rascado, Luis, Peralta-Gil, Martin, Santos-Zavaleta, Alberto (2009) Bioinformatics Resources for the Study of Gene Regulation in Bacteria Journal Of Bacteriology 191(1):23-31 [doi:10.1128/JB.01017-08]18978060
2008Gama Castro, MA. DEL SOCORRO, Jiménez Jacinto, Verónica, Peralta Gil, Martín, Santos Zavaleta, Alberto, Peñaloza Spinola, Mónica Ivonne, Contreras Moreira, Bruno, Segura Salazar, Juan, Muñíz Rascado, Luis José, Martínez Flores, Irma, Salgado Osorio, Heladia, Bonavides Martínez, César Augusto, Abreu Goodger, Cei Leander Gastón, Rodríguez Penagos, Carlos, Miranda-Ríos, J., Morett Sánchez, Juan Enrique, Merino, E., Huerta Moreno, Araceli, Treviño Quintanilla, Luis Gerardo, Collado Vides, Pedro Julio (2008) RegulonDB (version 6.0): gene regulation model of Escherichia coli K-12 beyond transcription, active (experimental) annotated promoters and Textpresso navigation Nucleic Acids Research 36(SI):120-124 [doi:10.1093/nar/gkm994]18158297
2007Rodríguez Penagos, Carlos, Salgado Osorio, Heladia, Martínez Flores, Irma, Collado Vides, Pedro Julio (2007) Automatic reconstruction of a bacterial regulatory network using Natural Language Processing Bmc Bioinformatics 8():293-293 [doi:10.1186/1471-2105-8-293]17683642
2007Rodríguez Penagos, Carlos, Salgado Osorio, Heladia, Martínez Flores, Irma, Collado Vides, Pedro Julio (2007) NLP-Based Curation of Bacterial Regulatory Networks CICLing ():575-586
2006Salgado Osorio, Heladia, Gama Castro, MA. DEL SOCORRO, Peralta Gil, Martín, Díaz Peredo, Edgar Ulises, Sánchez Solano, Erika Fabiola, Santos Zavaleta, Alberto, Martínez Flores, Irma, Jiménez Jacinto, Verónica, Bonavides Martínez, César Augusto, Segura Salazar, Juan, Martínez Antonio, Agustino, Collado Vides, Pedro Julio (2006) RegulonDB (version 5.0): Escherichia coli K-12 transcriptional regulatory network, operon organization, and growth conditions Nucleic Acids Research 34(SI):394-397 [doi:10.1093/nar/gkj156]16381895
2017Bustos P, Santamaría RI, Pérez-Carrascal OM, Acosta JL, Lozano L, Juárez S, Martínez-Flores I, Martínez-Romero E, Cevallos MÁ, Romero D, Dávila G, Vinuesa P, Miranda F, Ormeño E, González V (2017) Complete Genome Sequences of Three Rhizobium gallicum Symbionts Associated with Common Bean (Phaseolus vulgaris). Genome Announcements 5(11):- [doi:10.1128/genomeA.00030-17]28302777
2007Rodríguez-Penagos, C., Salgado, H., Martínez-Flores, I., Collado-Vides, J. (2007) NLP-based curation of bacterial regulatory networks LECT NOTES COMPUT SC 4394 LNCS():575-586
2012Salgado Osorio, Heladia, Martínez Flores, Irma, López Fuentes, Alejandra Cristina, Garcia Sotelo, Jair Santiago, Porrón Sotelo, Liliana, Muñíz Rascado, Luis José, Collado Vides, Pedro Julio (2012) Extracting regulatory networks of Escherichia coli from RegulonDB Methods in molecular biology (Clifton, N.J.) 804():179-195 [doi:10.1007/978-1-61779-361-5_10]22144154
2016Martínez-Flores I, Pérez-Morales D, Sánchez-Pérez M, Paredes CC, Collado-Vides J, Salgado H, Bustamante VH (2016) In Silico clustering of Salmonella global gene expression data reveals novel genes co-regulated with the SPI-1 virulence genes through HilD SCIENTIFIC REPORTS 6():37858-37858 [doi:10.1038/srep37858]27886269
2017Santamaría RI, Bustos P, Pérez-Carrascal OM, Miranda-Sánchez F, Vinuesa P, Martínez-Flores I, Juárez S, Lozano L, Martínez-Romero E, Cevallos MÁ, Romero D, Dávila G, Ormeño-Orrillo E, González V (2017) Complete Genome Sequences of Eight Rhizobium Symbionts Associated with Common Bean (Phaseolus vulgaris). Genome announcements 5(30):- [doi:10.1128/genomeA.00645-17]28751391