Irma Martínez Flores

Evolutionary Genomics Laboratory Technician

Laboratory Technician

Academic history

Links

Scopus

Telephone: (777) 3291690
Email: imartflo@ccg.unam.mx

Publications

YearPublicationPMID
2017Perez-Morales, Deyanira, Banda, Maria M., Elizabeth Chau, N. Y., Salgado, H, Martínez-Flores, I, Antonio Ibarra, J., Ilyas, Bushra, Coombes, Brian K. and Bustamante, Victor H.. (2017). "The transcriptional regulator SsrB is involved in a molecular switch controlling virulence lifestyles of Salmonella". PLOS PATHOGENS. 13(7):e1006497-. [doi:10.1371/journal.ppat.1006497]28704543
2016Gama-Castro, S, Salgado, H, Santos-Zavaleta, A, Ledezma-Tejeida, D., Muñíz-Rascado, L, García-Sotelo, J.S., Alquicira-Hernández, K, Martínez-Flores, I, Pannier, L., Castro-Mondragón, J.A., Medina-Rivera, A., Solano-Lira, H., Bonavides-Martínez, C, Pérez-Rueda, E., Alquicira-Hernández, S, Porrón-Sotelo, L., López-Fuentes, A, Hernández-Koutoucheva, A., Del Moral-Chávez, V, Rinaldi, F. and Collado-Vides, J. (2016). "RegulonDB version 9.0: High-level integration of gene regulation, coexpression, motif clustering and beyond". Nucleic Acids Research. 44(D1):133-143. [doi:10.1093/nar/gkv1156]26527724
2014Martinez, L.C., Martínez-Flores, I, Salgado, H, Fernández-Mora, M., Medina Rivera, Alejandra Eugenia, Puente, J.L., Collado-Vides, J and Bustamante, V.H.. (2014). "In Silico identification and experimental characterization of regulatory elements controlling the expression of the Salmonella csrB and csrC genes". Journal Of Bacteriology. 196(2):325-336. [doi:10.1128/JB.00806-13]24187088
2013Gerardo Trevino-Quintanilla, Luis, Freyre-González, JA and Martínez-Flores, I. (2013). "Anti-Sigma Factors in E-coli: Common Regulatory Mechanisms Controlling Sigma Factors Availability". Current Genomics. 14(6):378-387. [doi:10.2174/1389202911314060007]24396271
2013Salgado, H, Peralta Gil, Martín, Gama-Castro, S, Santos-Zavaleta, A, Muñíz-Rascado, L, Garcia Sotelo, Jair Santiago, Weiss, V., Solano Lira, Hilda, Martínez-Flores, I, Medina Rivera, Alejandra Eugenia, Salgado Osorio, Gerardo, Alquicira-Hernández, S, Alquicira-Hernández, K, López-Fuentes, A, Porrón Sotelo, Liliana, Huerta Moreno, Araceli, Bonavides-Martínez, C, Balderas MartÍnez, Yalbi Itzel, Pannier, Lucia, Olvera, M., Labastida, A., Jiménez-Jacinto, V., Vega-Alvarado, L., Del Moral-Chávez, V, Hérnandez-Álvarez, A, Morett, E. and Collado-Vides, J. (2013). "RegulonDB v8.0: Omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more". Nucleic Acids Research. 41(D1):203-213. [doi:10.1093/nar/gks1201]23203884
2011Gama-Castro, S, Salgado, H, Peralta Gil, Martín, Santos-Zavaleta, A, Muñíz-Rascado, L, Solano Lira, Hilda, Jimenez-Jacinto, V., Weiss, V., Garcia Sotelo, Jair Santiago, López-Fuentes, A, Porrón Sotelo, Liliana, Alquicira-Hernández, S, Medina Rivera, Alejandra Eugenia, Martínez-Flores, I, Alquicira-Hernández, K, Martínez Adame, Ruth, Bonavides-Martínez, C, Miranda-Ríos, J., Huerta Moreno, Araceli, Mendoza-Vargas, A., Collado Torres, Leonardo, Taboada, B., Vega-Alvarado, L., Olvera, M., Olvera, L., Grande, R., Morett, E. and Collado-Vides, J. (2011). "RegulonDB version 7.0: Transcriptional regulation of Escherichia coli K-12 integrated within genetic sensory response units (Gensor Units)". Nucleic Acids Research. 39(SUPPL. 1):98-105. [doi:10.1093/nar/gkq1110]21051347
2011Salgado, H, Martínez-Flores, I, López-Fuentes, A, Garcia Sotelo, Jair Santiago, Porrón Sotelo, Liliana, Muñíz-Rascado, L and Collado-Vides, J. (2011). "Extracting regulatory networks of/Escherichia coli/from RegulonDB". Bacterial Molecular Networks: Methods and Protocols. ():-.
2010Demir, E., Cary, M.P., Paley, S., Fukuda, K., Lemer, C., Vastrik, I., Wu, G.N., D Eustachio, P., Schaefer, C., Luciano, J., Schacherer, F., Martínez-Flores, I, Hu, Z.J., Jiménez-Jacinto, V., Joshi-Tope, G., Kandasamy, K., López-Fuentes, A.C., Mi, H.Y., Pichler, E., Rodchenkov, I., Splendiani, A., Tkachev, S., Zucker, J., Gopinath, G., Rajasimha, H., Ramakrishnan, R., Shah, I., Syed, M., Anwar, N., Babur, O., Blinov, M., Brauner, E., Corwin, D., Donaldson, S., Gibbons, F., Goldberg, R., Hornbeck, P., Luna, A., Murray-Rust, P., Neumann, E., Reubenacker, O., Samwald, M., van Iersel, M., Wimalaratne, S., Allen, K., Braun, B., Whirl-Carrillo, M., Cheung, K.H., Dahlquist, K., Finney, A., Gillespie, M., Glass, E., Gong, L., Haw, R., Honig, M., Hubaut, O., Kane, D., Krupa, S., Kutmon, M., Leonard, J., Marks, D., Merberg, D., Petri, V., Pico, A., Ravenscroft, D., Ren L.Y., Shah, N., Sunshine, M., Tang, R., Whaley, R., Letovksy, S., Buetow, K.H., Rzhetsky, A., Schachter, V., Sobral, B., Dogrusoz, U., McWeeney, S., Aladjem, M., Birney, E., Collado-Vides, J, Goto, S., Hucka, M., Le Novere, N., Maltsev, N., Pandey, A., Thomas, P., Wingender, E., Karp, P.D., Sander, C. and Bader, G.D.. (2010). "The BioPAX community standard for pathway data sharing". Nature Biotechnology. 28(9):935-942. [doi:10.1038/nbt.1666]20829833
2010Salgado, H, López-Fuentes, A, Martínez-Flores, I, Garcia Sotelo, Jair Santiago, Porrón Sotelo, Liliana, Solano Lira, Hilda, Muñíz-Rascado, L and Collado-Vides, J. (2010). "Extracting regulatory networks of Escherichia coli from RegulonDB". Bacterial Molecular Networks: Methods and Protocols. ():-.
2010Martínez-Flores, I, Jiménez-Jacinto, V., López-Fuentes, A and Collado-Vides, J. (2010). "Expanding BioPAX format by integrating Gene Regulation". EMBnet.journal. 16():39-43.
2009Collado-Vides, J, Salgado, H, Morett, Enrique, Gama-Castro, S, Jimenez-Jacinto, Veronica, Martínez-Flores, I, Medina-Rivera, Alejandra, Muñíz-Rascado, L, Peralta-Gil, Martin and Santos-Zavaleta, A. (2009). "Bioinformatics resources for the study of gene regulation in bacteria". Journal Of Bacteriology. 91(1):23-31. [doi:10.1128/JB.01017-08]18978060
2008Gama-Castro, S, Jiménez Jacinto, Verónica, Peralta Gil, Martín, Santos-Zavaleta, A, Peñaloza Spinola, Mónica Ivonne, Contreras Moreira, Bruno, Segura Salazar, Juan, Muñíz-Rascado, L, Martínez-Flores, I, Salgado, H, Bonavides-Martínez, C, Abreu Goodger, Cei Leander Gastón, Rodríguez Penagos, Carlos, Miranda-Ríos, J., Morett Sánchez, Juan Enrique, Merino, E., Huerta Moreno, Araceli, Treviño Quintanilla, Luis Gerardo and Collado-Vides, J. (2008). "RegulonDB (version 6.0): Gene regulation model of Escherichia coli K-12 beyond transcription, active (experimental) annotated promoters and Textpresso navigation". Nucleic Acids Research. 36(SUPPL. 1):120-124. [doi:10.1093/nar/gkm994]18158297
2007Rodríguez Penagos, Carlos, Salgado, H, Martínez-Flores, I and Collado-Vides, J. (2007). "Automatic reconstruction of a bacterial regulatory network using Natural Language Processing". Bmc Bioinformatics. 8():293-293. [doi:10.1186/1471-2105-8-293]17683642
2007Rodríguez Penagos, Carlos, Martínez-Flores, I, Salgado, H and Collado-Vides, J. (2007). "NLP-based curation of bacterial regulatory networks". Computational Linguistics And Intelligent Text Processing. 4394():575-.
2007Rodríguez Penagos, Carlos, Salgado, H, Martínez-Flores, I and Collado-Vides, J. (2007). "NLP-Based Curation of Bacterial Regulatory Networks". CICLing. ():575-586.
2006Salgado, H, Gama-Castro, S, Peralta Gil, Martín, Díaz Peredo, Edgar Ulises, Sánchez Solano, Erika Fabiola, Santos-Zavaleta, A, Martínez-Flores, I, Jiménez Jacinto, Verónica, Bonavides-Martínez, C, Segura Salazar, Juan, Martínez Antonio, Agustino and Collado-Vides, J. (2006). "RegulonDB (version 5.0): Escherichia coli K-12 transcriptional regulatory network, operon organization, and growth conditions.". Nucleic Acids Research. 34(Database issue):394-397. [doi:10.1093/nar/gkj156]16381895
2007Rodríguez-Penagos, C., Salgado, H, Martínez-Flores, I and Collado-Vides, J. (2007). "NLP-based curation of bacterial regulatory networks". LECT NOTES COMPUT SC. 4394 LNCS():575-586.
2012Salgado, H, Martínez-Flores, I, López-Fuentes, A, Garcia Sotelo, Jair Santiago, Porrón Sotelo, Liliana, Muñíz-Rascado, L and Collado-Vides, J. (2012). "Extracting regulatory networks of Escherichia coli from RegulonDB". Methods in Molecular Biology. 804():179-195. [doi:10.1007/978-1-61779-361-5_10]22144154
2016Martínez-Flores, I, Pérez-Morales D, Sánchez-Pérez M, Paredes CC, Collado-Vides, J, Salgado, H and Bustamante VH. (2016). "In Silico clustering of Salmonella global gene expression data reveals novel genes co-regulated with the SPI-1 virulence genes through HilD". SCIENTIFIC REPORTS. 6():37858-37858. [doi:10.1038/srep37858]27886269
2017Bustos, P, Santamaria, RI, Pérez-Carrascal OM, Acosta JL, Lozano, L, Juárez S, Martínez-Flores, I, Martínez-Romero, E, Cevallos, MA, Romero, D, Dávila G, Vinuesa, P, Miranda F, Ormeño E and González, V. (2017). "Complete genome sequences of three Rhizobium gallicum symbionts associated with common bean (Phaseolus vulgaris)". Genome Announcements. 5(11):e00030-17-. [doi:10.1128/genomeA.00030-17]28302777
2006Peñaloza Spinola, Mónica Ivonne, Peralta Gil, Martín, Gama-Castro, S, Contreras Moreira, Bruno, Santos-Zavaleta, A, Martínez-Flores, I and Collado-Vides, J. (2006). "RegulonDB: Going beyond transcriptional regulation". Proceedings Of The Fifth International Conference On Bioinformatics Of Genome Regulation And Structure, Vol 3. ():322-322.
2017Santamaria, RI, Bustos, P, Pérez-Carrascal OM, Miranda-Sánchez F, Vinuesa, P, Martínez-Flores, I, Juárez S, Lozano, L, Martínez-Romero, E, Cevallos, MA, Romero, D, Dávila G, Ormeño-Orrillo E and González, V. (2017). "Complete genome sequences of eight Rhizobium symbionts associated with common bean (Phaseolus vulgaris)". Genome Announcements. 5(30):e00645-17-. [doi:10.1128/genomeA.00645-17]28751391