Heladia Salgado Osorio

Computational Genomics Laboratory Technician

Laboratory Technician

Semblance

Links

Scopus

Telephone: (777) 3132063
Email: heladia@ccg.unam.mx

Publications

YearPublicationPMID
2017Perez-Morales, Deyanira, Banda, Maria M., Elizabeth Chau, N. Y., Salgado, Heladia, Martinez-Flores, Irma, Antonio Ibarra, J., Ilyas, Bushra, Coombes, Brian K., Bustamante, Victor H. (2017) The transcriptional regulator SsrB is involved in a molecular switch controlling virulence lifestyles of Salmonella PLOS PATHOGENS 13(7):e1006497- [doi:10.1371/journal.ppat.1006497]28704543
2016Martínez-Flores I, Pérez-Morales D, Sánchez-Pérez M, Paredes CC, Collado-Vides J, Salgado H, Bustamante VH (2016) In silico clustering of Salmonella global gene expression data reveals novel genes co-regulated with the SPI-1 virulence genes through HilD SCIENTIFIC REPORTS 6():37858-37858 [doi:10.1038/srep37858]27886269
2016Gama-Castro, S., Salgado, H., Santos-Zavaleta, A., Ledezma-Tejeida, D., Muñiz-Rascado, L., García-Sotelo, J.S., Alquicira-Hernández, K., Martínez-Flores, I., Pannier, L., Castro-Mondragón, J.A., Medina-Rivera, A., Solano-Lira, H., Bonavides-Martínez, C., Pérez-Rueda, E., Alquicira-Hernández, S., Porrón-Sotelo, L., López-Fuentes, A., Hernández-Koutoucheva, A., Del Moral-Chavez, V., Rinaldi, F., Collado-Vides, J. (2016) RegulonDB version 9.0: High-level integration of gene regulation, coexpression, motif clustering and beyond Nucleic Acids Research 44(D1):133-143 [doi:10.1093/nar/gkv1156]26527724
2014Martinez, L.C., Martínez Flores, Irma, Salgado Osorio, Heladia, Fernández-Mora, M., Medina Rivera, Alejandra Eugenia, Puente, J.L., Collado Vides, Pedro Julio, Bustamante, V.H. (2014) In Silico Identification and Experimental Characterization of Regulatory Elements Controlling the Expression of the Salmonella csrB and csrC Genes Journal Of Bacteriology 196(2):325-336 [doi:10.1128/JB.00806-13]24187088
2013Balderas MartÍnez, Yalbi Itzel, Savageau, M., Salgado Osorio, Heladia, Pérez-Rueda, E, Morett, E., Collado Vides, Pedro Julio (2013) Transcription Factors in Escherichia coli Prefer the Holo Conformation Plos One 8(6):e65723- [doi:10.1371/journal.pone.0065723]23776535
2013Weiss, V., Medina-Rivera, A, Huerta, AM, Santos-Zavaleta, A, Salgado, H, Morett, E., Collado-Vides, J (2013) Evidence classification of high-throughput protocols and confidence integration in RegulonDB DATABASE-THE JOURNAL OF BIOLOGICAL DATABASES AND CURATION 2013():bas059- [doi:10.1093/database/bas059]23327937
2013Salgado Osorio, Heladia, Peralta Gil, Martín, Gama Castro, MA. DEL SOCORRO, Santos Zavaleta, Alberto, Muñíz Rascado, Luis José, Garcia Sotelo, Jair Santiago, Weiss, V., Solano Lira, Hilda, Martínez Flores, Irma, Medina Rivera, Alejandra Eugenia, Salgado Osorio, Gerardo, Alquicira Hernández, Shirley, Alquicira Hernández, Kevin, López Fuentes, Alejandra Cristina, Porrón Sotelo, Liliana, Huerta Moreno, Araceli, Bonavides Martínez, César Augusto, Balderas MartÍnez, Yalbi Itzel, Pannier, Lucia, Olvera, M., Labastida, A., Jiménez-Jacinto, V., Vega-Alvarado, L., del Moral Chávez, Victor Manuel, Hernández Álvarez, Alfredo José, Morett, E., Collado Vides, Pedro Julio (2013) RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more Nucleic Acids Research 41(D1):203-213 [doi:10.1093/nar/gks1201]23203884
2012Pauling, J., Rottger, R., Neuner, A., Salgado Osorio, Heladia, Collado Vides, Pedro Julio, Kalaghatgi, P., Azevedo, V., Tauch, A., Puhlerg, A., Baumbach, J. (2012) On the trail of EHEC/EAEC-unraveling the gene regulatory networks of human pathogenic Escherichia coli bacteria Integrative Biology 4(7):728-733 [doi:10.1039/c2ib00132b]22318347
2012Salgado Osorio, Heladia, Martínez Flores, Irma, López Fuentes, Alejandra Cristina, Garcia Sotelo, Jair Santiago, Porrón Sotelo, Liliana, Muñíz Rascado, Luis José, Collado Vides, Pedro Julio (2012) Extracting regulatory networks of escherichia coli from RegulonDB Methods in molecular biology (Clifton, N.J.) 804():179-195 [doi:10.1007/978-1-61779-361-5_10]22144154
2011Medina Rivera, Alejandra Eugenia, Abreu-Goodger, C., Thomas-Chollier, M., Salgado Osorio, Heladia, Collado Vides, Pedro Julio, Van Helden, J. (2011) Theoretical and empirical quality assessment of transcription factor-binding motifs Nucleic Acids Research 39(3):808-824 [doi:10.1093/nar/gkq710]20923783
2011Gama Castro, MA. DEL SOCORRO, Salgado Osorio, Heladia, Peralta Gil, Martín, Santos Zavaleta, Alberto, Muñíz Rascado, Luis José, Solano Lira, Hilda, Jimenez-Jacinto, V., Weiss, V., Garcia Sotelo, Jair Santiago, López Fuentes, Alejandra Cristina, Porrón Sotelo, Liliana, Alquicira Hernández, Shirley, Medina Rivera, Alejandra Eugenia, Martínez Flores, Irma, Alquicira Hernández, Kevin, Martínez Adame, Ruth, Bonavides Martínez, César Augusto, Miranda-Ríos, J., Huerta Moreno, Araceli, Mendoza-Vargas, A., Collado Torres, Leonardo, Taboada, B., Vega-Alvarado, L., Olvera, M., Olvera, L., Grande, R., Morett, E., Collado Vides, Pedro Julio (2011) RegulonDB version 7.0: transcriptional regulation of Escherichia coli K-12 integrated within genetic sensory response units (Gensor Units) Nucleic Acids Research 39(1):98-105 [doi:10.1093/nar/gkq1110]21051347
2011Salgado Osorio, Heladia, Martínez Flores, Irma, López Fuentes, Alejandra Cristina, Garcia Sotelo, Jair Santiago, Porrón Sotelo, Liliana, Muñíz Rascado, Luis José, Collado Vides, Pedro Julio (2011) Extracting regulatory networks of/Escherichia coli/from RegulonDB Bacterial Molecular Networks: Methods and Protocols ():-
2010Salgado Osorio, Heladia, López Fuentes, Alejandra Cristina, Martínez Flores, Irma, Garcia Sotelo, Jair Santiago, Porrón Sotelo, Liliana, Solano Lira, Hilda, Muñíz Rascado, Luis José, Collado Vides, Pedro Julio (2010) Extracting regulatory networks of Escherichia coli from RegulonDB Bacterial Molecular Networks: Methods and Protocols ():-
2009Mendoza-Vargas, Alfredo, Olvera, Leticia, Olvera, Maricela, Grande, Ricardo, Vega-Alvarado, Leticia, Taboada, Blanca, Jimenez-Jacinto, Veronica, Salgado, Heladia, Juarez, Katy, Contreras-Moreira, Bruno, Huerta, Araceli M., Collado-Vides, Julio, Morett, Enrique (2009) Genome-wide identification of transcription start sites, promoters and transcription factor binding sites in E. coli Plos One 4(10):e7526- [doi:10.1371/journal.pone.0007526]19838305
2009Janga, Sarath Chandra, Salgado, Heladia, Martinez-Antonio, Agustino (2009) Transcriptional regulation shapes the organization of genes on bacterial chromosomes Nucleic Acids Research 37(11):3680-3688 [doi:10.1093/nar/gkp231]19372274
2009Collado-Vides, Julio, Salgado, Heladia, Morett, Enrique, Gama-Castro, Socorro, Jimenez-Jacinto, Veronica, Martinez-Flores, Irma, Medina-Rivera, Alejandra, Muniz-Rascado, Luis, Peralta-Gil, Martin, Santos-Zavaleta, Alberto (2009) Bioinformatics Resources for the Study of Gene Regulation in Bacteria Journal Of Bacteriology 191(1):23-31 [doi:10.1128/JB.01017-08]18978060
2008Hernandez-Romano, Jesus, Carlos-Rivera, Francisco J., Salgado, Heladia, Lamadrid-Figueroa, Hector, Valverde-Garduno, Veronica, Rodriguez, Mario H., Martinez-Barnetche, Jesus (2008) Immunity related genes in dipterans share common enrichment of AT-rich motifs in their 5 ' regulatory regions that are potentially involved in nucleosome formation Bmc Genomics 9():326-326 [doi:10.1186/1471-2164-9-326]18613977
2008Hernandez-Lucas, I., Gallego-Hernandez, A. L., Encarnacion, S., Fernandez-Mora, M., Martinez-Batallar, A. G., Salgado, H., Oropeza, R., Calva, E. (2008) The LysR-type transcriptional regulator LeuO controls expression of several genes in Salmonella enterica serovar typhi Journal Of Bacteriology 190(5):1658-1670 [doi:10.1128/JB.01649-07]18156266
2008Gama Castro, MA. DEL SOCORRO, Jiménez Jacinto, Verónica, Peralta Gil, Martín, Santos Zavaleta, Alberto, Peñaloza Spinola, Mónica Ivonne, Contreras Moreira, Bruno, Segura Salazar, Juan, Muñíz Rascado, Luis José, Martínez Flores, Irma, Salgado Osorio, Heladia, Bonavides Martínez, César Augusto, Abreu Goodger, Cei Leander Gastón, Rodríguez Penagos, Carlos, Miranda-Ríos, J., Morett Sánchez, Juan Enrique, Merino, E., Huerta Moreno, Araceli, Treviño Quintanilla, Luis Gerardo, Collado Vides, Pedro Julio (2008) RegulonDB (version 6.0): gene regulation model of Escherichia coli K-12 beyond transcription, active (experimental) annotated promoters and Textpresso navigation Nucleic Acids Research 36(SI):120-124 [doi:10.1093/nar/gkm994]18158297
2007Rodríguez-Penagos, C., Salgado, H., Martínez-Flores, I., Collado-Vides, J. (2007) NLP-based curation of bacterial regulatory networks LECT NOTES COMPUT SC 4394 LNCS():575-586
2007Janga, Sarath Chandra, Salgado Osorio, Heladia, Martínez Antonio, Agustino, Collado Vides, Pedro Julio (2007) Coordination logic of the sensing machinery in the transcriptional regulatory network of Escherichia coli Nucleic Acids Research 35(20):6963-6972 [doi:10.1093/nar/gkm743]17933780
2007Rodríguez Penagos, Carlos, Salgado Osorio, Heladia, Martínez Flores, Irma, Collado Vides, Pedro Julio (2007) Automatic reconstruction of a bacterial regulatory network using Natural Language Processing Bmc Bioinformatics 8():293-293 [doi:10.1186/1471-2105-8-293]17683642
2007Salgado, Heladia, Martinez-Antonio, Agustino, Janga, Sarath Chandra (2007) Conservation of transcriptional sensing systems in prokaryotes: A perspective from Escherichia coli FEBS LETTERS 581(18):3499-3506 [doi:10.1016/j.febslet.2007.06.059]17617412
2007Janga, Sarath Chandra, Salgado Osorio, Heladia, Collado Vides, Pedro Julio, Martínez Antonio, Agustino (2007) Internal versus external effector and transcription factor gene pairs differ in their relative chromosomal position in Escherichia coli Journal Of Molecular Biology 368(1):263-272 [doi:10.1016/j.jmb.2007.01.019]17321548
2007Rodríguez Penagos, Carlos, Salgado Osorio, Heladia, Martínez Flores, Irma, Collado Vides, Pedro Julio (2007) NLP-Based Curation of Bacterial Regulatory Networks CICLing ():575-586
2006Salgado Osorio, Heladia, Santos Zavaleta, Alberto, Gama Castro, MA. DEL SOCORRO, Peralta Gil, Martín, Peñaloza Spinola, Mónica Ivonne, Martínez Antonio, Agustino, Karp, P.D., Collado Vides, Pedro Julio (2006) The comprehensive updated regulatory network of Escherichia coli K-12 Bmc Bioinformatics 7():5-5 [doi:10.1186/1471-2105-7-5]16398937
2006Martínez Antonio, Agustino, Janga, Sarath Chandra, Salgado Osorio, Heladia, Collado Vides, Pedro Julio (2006) Internal-sensing machinery directs the activity of the regulatory network in Escherichia coli TRENDS IN MICROBIOLOGY 14(1):22-27 [doi:10.1016/j.tim.2005.11.002]16311037
2006Salgado Osorio, Heladia, Gama Castro, MA. DEL SOCORRO, Peralta Gil, Martín, Díaz Peredo, Edgar Ulises, Sánchez Solano, Erika Fabiola, Santos Zavaleta, Alberto, Martínez Flores, Irma, Jiménez Jacinto, Verónica, Bonavides Martínez, César Augusto, Segura Salazar, Juan, Martínez Antonio, Agustino, Collado Vides, Pedro Julio (2006) RegulonDB (version 5.0): Escherichia coli K-12 transcriptional regulatory network, operon organization, and growth conditions Nucleic Acids Research 34(SI):394-397 [doi:10.1093/nar/gkj156]16381895
2004Oviedo, N.A., Salgado Osorio, Heladia, Collado Vides, Pedro Julio, Guarneros, G. (2004) Distribution of minigenes in the bacteriophage lambda chromosome Gene 329(1-2):115-124 [doi:10.1016/j.gene.2003.12.031]15033534
2004Salgado Osorio, Heladia, Gama Castro, MA. DEL SOCORRO, Martínez Antonio, Agustino, Díaz Peredo, Edgar Ulises, Sánchez Solano, Erika Fabiola, Peralta Gil, Martín, García Alonso, Delfino, Jiménez Jacinto, Verónica, Santos Zavaleta, Alberto, Bonavides Martínez, César Augusto, Collado Vides, Pedro Julio (2004) RegulonDB (version 4.0): transcriptional regulation, operon organization and growth conditions in Escherichia coli K-12 Nucleic Acids Research 32(SI):303-306 [doi:10.1093/nar/gkh140]14681419
2003Martínez Antonio, Agustino, Salgado Osorio, Heladia, Gama Castro, MA. DEL SOCORRO, Gutiérrez Ríos, Rosa María, Jiménez Jacinto, Verónica, Collado Vides, Pedro Julio (2003) Environmental conditions and transcriptional regulation in Escherichia coli: A physiological integrative approach BIOTECHNOLOGY AND BIOENGINEERING 84(7):743-749 [doi:10.1002/bit.10846]14708114
2003González Zúñiga, Víctor Manuel, Bustos Arcos, Virginia Patricia, Ramírez Romero, Miguel Ángel, Medrano Soto, Luis Arturo, Salgado Osorio, Heladia, Hernández González, Ismael Luis, Hernández Celis, Juan Carlos, Quintero Hernández, Verónica, Moreno Hagelsieb, Gabriel, Girard Cuesy, María de Lourdes, Rodríguez Sánchez, Oscar, Flores López, Margarita, Cevallos Gaos, Miguel Ángel Carlos, Collado Vides, Pedro Julio, Romero Camarena, David René, Dávila Ramos, José Guillermo (2003) The mosaic structure of the symbiotic plasmid of Rhizobium etli CFN42 and its relation to other symbiotic genome compartments Genome Biology 4(6):R36- [doi:10.1186/gb-2003-4-6-r36]12801410
2001Salgado, H, Santos-Zavaleta, A, Gama-Castro, S, Millen-Zarate, D, Diaz-Peredo, E, Sanchez-Solano, F, Pérez-Rueda, E, Bonavides-Martinez, C, Collado-Vides, J (2001) RegulonDB (version 3.2): transcriptional regulation and operon organization in Escherichia coli K-12 Nucleic Acids Research 29(1):72-74 [doi:10.1093/nar/29.1.72]11125053
2000Salgado Osorio, Heladia, Moreno Hagelsieb, Gabriel, Smith, T.F., Collado Vides, Pedro Julio (2000) Operons in Escherichia coli: Genomic analyses and predictions PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA 97(12):6652-6657 [doi:10.1073/pnas.110147297]10823905
2000Salgado, H, Santos-Zavaleta, A, Gama-Castro, S, Millan-Zarate, D, Blattner, FR, Collado-Vides, J (2000) RegulonDB (version 3.0): transcriptional regulation and operon organization in Escherichia coli K-12 Nucleic Acids Research 28(1):65-67 [doi:10.1093/nar/28.1.65]10592182
1999Salgado, H, Santos, A, Garza-Ramos, U, van Helden, J, Diaz, E, Collado-Vides, J (1999) RegulonDB (version 2.0): a database on transcriptional regulation in Escherichia coli Nucleic Acids Research 27(1):59-60 [doi:10.1093/nar/27.1.59]9847141
1998Thieffry, D, Salgado, H, Huerta, AM, Collado-Vides, J (1998) Prediction of transcriptional regulatory sites in the complete genome sequence of Escherichia coli K-12 Bioinformatics 14(5):391-400 [doi:10.1093/bioinformatics/14.5.391]9682052
1998Huerta, AM, Salgado, H, Thieffry, D, Collado-Vides, J (1998) RegulonDB: a database on transcriptional regulation in Escherichia coli Nucleic Acids Research 26(1):55-59 [doi:10.1093/nar/26.1.55]9399800
1997Thieffry Jacot-Descombes, Denis Louis, Rosenblueth, D.A., Huerta Moreno, Araceli, Salgado Osorio, Heladia, Collado Vides, Pedro Julio (1997) Definite-clause grammars for the analysis of cis-regulatory regions in E. coli. Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing ():441-4529390313
1996Rosenblueth, DA, Thieffry, D, Huerta, AM, Salgado, H, ColladoVides, J (1996) Syntactic recognition of regulatory regions in Escherichia coli COMPUTER APPLICATIONS IN THE BIOSCIENCES 12(5):415-4228996790