Genome Engineering

This program is dedicated to the understanding of the forces and mechanisms that have forged the genomic architecture of proteobacteria associated with plants (specifically Rhizobium sp.), both in the short term and with an evolutionary perspective.

The long-term goal is to use this knowledge to develop new strategies in genomic engineering. To this end, our research seeks to understand the mechanisms and evolutionary consequences of homologous recombination, site-specific recombination during plasmid conjugation, regulation of conjugative transfer, functional genomics of plasmids (including functional analysis of genes encoded on plasmids and the role of extracytoplasmic sigma factors in stress responses), as well as molecular systematics, microevolution and phylogeography. Part of this knowledge is being integrated into the generation of new approaches for the generation of programmed deletions and global mutagenesis of the genome.

Our work combines bioinformatic analysis with genetic and molecular biology approaches as well as population genetics analysis.

Group Staff

David René Romero CamarenaResearcherFull 3175867
Susana Brom KlannerResearcherAssociate 3291691
Alejandro García de los SantosResearcherAssociate 3175867
Pablo Vinuesa FleischmannResearcherAssociate 3175867
Araceli Elvira Dávalos RodríguezLaboratory TechnicianLaboratory 3175867
Laura Cervantes de la LuzLaboratory TechnicianLaboratory 3175867
Javier Rivera CamposLaboratory TechnicianLaboratory 3175867
Claudia Guadalupe Torres CalzadaPostdoctoral 3175867
María del Carmen Guadarrama RománPostdoctoral ) 3175867

Group Publications

2018Sandner-Miranda, Luisa, Vinuesa, P., Cravioto, Alejandro and Morales-Espinosa, Rosario. (2018). "The genomic basis of intrinsic and acquired antibiotic resistance in the genus Serratia". Frontiers in Microbiology. 9(MAY):828-828. [doi:10.3389/fmicb.2018.00828]29867787
2018González-Sánchez A, Cubillas CA, Miranda F, Dávalos A and García-de los Santos, A.. (2018). "The ropAe gene encodes a porin-like protein involved in copper transit in Rhizobium etli CFN42". MICROBIOLOGYOPEN. 7(3):e00573-. [doi:10.1002/mbo3.573]29280343
2018Vinuesa, P., Ochoa-Sánchez, L.E. and Contreras-Moreira, B.. (2018). "GET_PHYLOMARKERS, a software package to select optimal orthologous clusters for phylogenomics and inferring pan-genome phylogenies, used for a critical geno-taxonomic revision of the genus Stenotrophomonas". Frontiers in Microbiology. 9(MAY):771-771. [doi:10.3389/fmicb.2018.00771]29765358
2017Cubillas, C., Miranda-Sánchez, F., González-Sánchez, A., Elizalde, J.P., Vinuesa, P., Brom, S. and García-de los Santos, A.. (2017). "A comprehensive phylogenetic analysis of copper transporting P1BATPases from bacteria of the Rhizobiales order uncovers multiplicity, diversity and novel taxonomic subtypes". MICROBIOLOGYOPEN. 6(4):e00452-. [doi:10.1002/mbo3.452]28217917
2017Martínez-Flores, W.A., Palma-García, J.M., Caballero-Ortega, H., Del Viento-Camacho, A., López-Escamilla, E., Martínez-Hernández, F., Vinuesa, P., Correa, D. and Maravilla, P.. (2017). "Genotyping Toxoplasma Gondii with the B1 Gene in Naturally Infected Sheep from an Endemic Region in the Pacific Coast of Mexico". VECTOR-BORNE AND ZOONOTIC DISEASES. 17(7):495-502. [doi:10.1089/vbz.2016.2085]28530509
2017Alfredo Banuelos-Vazquez, Luis, Torres Tejerizo, Gonzalo and Brom, S.. (2017). "Regulation of conjugative transfer of plasmids and integrative conjugative elements". Plasmid. 91():82-89. [doi:10.1016/j.plasmid.2017.04.002]28438469
2016Calvillo, G. and Romero, D.. (2016). "On the closest point to the origin in transportation polytopes". DISCRETE APPL MATH. 210():88-102. [doi:10.1016/j.dam.2015.01.027]
2016Perez Carrascal, Olga M., VanInsberghe, David, Juarez, Soledad, Polz, Martin F., Vinuesa, P. and González, V.. (2016). "Population genomics of the symbiotic plasmids of sympatric nitrogen-fixing Rhizobium species associated with Phaseolus vulgaris". Environmental Microbiology. 18(8):2660-2676. [doi:10.1111/1462-2920.13415]27312778
2016Miranda-Sanchez, Fabiola, Rivera, Javier and Vinuesa, P.. (2016). "Diversity patterns of Rhizobiaceae communities inhabiting soils, root surfaces and nodules reveal a strong selection of rhizobial partners by legumes". Environmental Microbiology. 18(8):2375-2391. [doi:10.1111/1462-2920.13061]26395550
2016Vinuesa, P., Puente, J.L., Calva, E., Zaidi, M.B. and Silva, C.. (2016). "Complete genome sequence of Salmonella enterica serovar Typhimurium strain SO3 (sequence type 302) isolated from a baby with meningitis in Mexico". Genome Announcements. 4(2):e00285-16-. [doi:10.1128/genomeA.00285-16]27103717
2016Centeno-Leija, S., Vinuesa, P., Karol Rodr�guez-Pe�a,, Trenado-Uribe, M., Yair C�rdenas-Conejo,, Serrano-Posada, H., Romina Rodr�guez-Sanoja, and S�ncheza, S.. (2016). "Draft genome Sequence of an endophytic actinoplanes species, encoding uncommon trans-Acyltransferase polyketide synthases". Genome Announcements. 4(2):e00164-16-. [doi:10.1128/genomeA.00164-16]27013046
2016Sandner-Miranda, L., Vinuesa, P., Sober�n-Ch�vez, G. and Morales-Espinosa, R.. (2016). "Complete genome sequence of Serratia marcescens SmUNAM836, a nonpigmented multidrug-resistant strain isolated from a Mexican patient with obstructive pulmonary disease". Genome Announcements. 4(1):e01417-15-. [doi:10.1128/genomeA.01417-15]26798087
2016Silva, C., Calva, E., Puente, J.L., Zaidi, M.B. and Vinuesa, P.. (2016). "Complete genome sequence of Salmonella enterica serovar Typhimurium strain SO2 (sequence type 302) isolated from an asymptomatic child in Mexico". Genome Announcements. 4(2):e00253-16-. [doi:10.1128/genomeA.00253-16]27081133
2016Silva, C., Calva, E., Puente, J.L., Zaidi, M.B. and Vinuesa, P.. (2016). "Complete genome sequence of Salmonella enterica serovar Typhimurium strain YU15 (sequence type 19) harboring the Salmonella genomic island 1 and virulence plasmid pSTV". Genome Announcements. 4(2):e00252-16-. [doi:10.1128/genomeA.00252-16]27081132
2015Riquelme, Cristina, Camara, Sandra, Enes Dapkevicius, Maria de Lurdes N., Vinuesa, P., Gomes da Silva, Celia Costa, Xavier Malcata, F. and Rego, Oldemiro A.. (2015). "Characterization of the bacterial biodiversity in Pico cheese (an artisanal Azorean food)". International Journal Of Food Microbiology. 192():86-94. [doi:10.1016/j.ijfoodmicro.2014.09.031]25440551
2015Torres Tejerizo, G., Bañuelos, L.A., Cervantes, L., Gaytán, P., Pistorio, M., Romero, D. and Brom, S.. (2015). "Development of molecular tools to monitor conjugative transfer in Rhizobia". JOURNAL OF MICROBIOLOGICAL METHODS. 117():155-163. [doi:10.1016/j.mimet.2015.08.005]26272377
2015Vinuesa, P. and Contreras-Moreira, B.. (2015). "Pangenomic Analysis of the Rhizobiales Using the GET_HOMOLOGUES Software Package". Biological Nitrogen Fixation. 1-2():271-280. [doi:10.1002/9781119053095.ch27]
2015Vinuesa, P. and Ochoa-S�nchez, L.E.. (2015). "Complete genome sequencing of Stenotrophomonas acidaminiphila ZAC14D2_NAIMI4_2, a multidrug-resistant strain isolated from sediments of a polluted river in Mexico, uncovers new antibiotic resistance genes and a novel class-II lasso peptide biosynthesis gene cluster". Genome Announcements. 3(6):e0143315-. [doi:10.1128/genomeA.01433-15]26659678
2015Vinuesa, P. and Contreras-Moreira, B.. (2015). "Robust identification of orthologues and paralogues for microbial pan-genomics using GET_HOMOLOGUES: A case study of pIncA/C plasmids". Methods in Molecular Biology. 1231():203-232. [doi:10.1007/978-1-4939-1720-4_14]25343868
2015Yáñez-Cuna, F.O., Castellanos, M. and Romero, D.. (2015). "Biased gene conversion in Rhizobium etli is caused by preferential double-strand breaks on one of the recombining homologs". Journal Of Bacteriology. 198(3):591-599. [doi:10.1128/JB.00768-15]26598365
2014Rogel, M.A., Bustos, P., Santamaría, R.I., González, V., Romero, D., Cevallos, M.A., Lozano, L., Castro-Mondragón, J., Martínez, J., Ormeño-Orrillo, E. and Martínez-Romero, E.. (2014). "Genomic basis of symbiovar mimosae in Rhizobium etli". Bmc Genomics. 15(1):575-575. [doi:10.1186/1471-2164-15-575]25005495
2014Chang, F.M.J., Coyne, H.J., Cubillas Ramírez, Ciro Alberto, Vinuesa, P., Fang, X.Y., Ma, Z., Ma, D.J., Helmann, J.D., García-de los Santos, A., Wang, Y.X., Dann, C.E. and Giedroc, D.P.. (2014). "Cu(I)-mediated allosteric switching in a copper-sensing operon repressor (CsoR)". JOURNAL OF BIOLOGICAL CHEMISTRY. 289(27):19204-19217. [doi:10.1074/jbc.M114.556704]24831014
2014Brom, S., Pistorio, M., Romero, D. and Torres-Tejerizo, G.. (2014). "Boundaries for conjugative transfer of rhizobial plasmids: Restraining and releasing factors". Plasticity In Plant-Growth-Promoting And Phytopathogenic Bacteria. 9781461492030():43-54. [doi:10.1007/978-1-4614-9203-0_3]
2014Cubillas, Ciro, Vinuesa, P., Tabche, Maria Luisa, Davalos, Araceli, Vazquez, Alejandra, Hernandez-Lucas, Ismael, Romero, D. and García-de los Santos, A.. (2014). "The cation diffusion facilitator protein EmfA of Rhizobium etli belongs to a novel subfamily of Mn<sup>2+</sup>/Fe<sup>2+</sup> transporters conserved in a-proteobacteria". Metallomics. 6(10):1808-1815. [doi:10.1039/c4mt00135d]25054342
2014Tejerizo, G.T., Pistorio, M., Althabegoiti, M.J., Cervantes de la Luz, Laura, Wibberg, D., Schluter, A., Puhler, A., Lagares, A., Romero, D. and Brom, S.. (2014). "Rhizobial plasmid pLPU83a is able to switch between different transfer machineries depending on its genomic background". Fems Microbiology Ecology. 88(3):565-578. [doi:10.1111/1574-6941.12325]24646299
2013Cubillas Ramírez, Ciro Alberto, Vinuesa, P., Tabche, M.L. and García-de los Santos, A.. (2013). "Phylogenomic analysis of Cation Diffusion Facilitator proteins uncovers Ni2+/Co2+ transporters". Metallomics. 5(12):1634-1643. [doi:10.1039/c3mt00204g]24077251
2013Contreras-Moreira, B. and Vinuesa, P.. (2013). "GET_HOMOLOGUES, a versatile software package for scalable and robust microbial pangenome analysis". Applied And Environmental Microbiology. 79(24):7696-7701. [doi:10.1128/AEM.02411-13]24096415
2013Estrada De Los Santos, Paulina, Vinuesa, P., Martínez Aguilar, Lourdes, Hirsch, A.M. and Caballero Mellado, José de Jesús. (2013). "Phylogenetic analysis of Burkholderia species by multilocus Sequence Analysis". Current Microbiology. 67(1):51-60. [doi:10.1007/s00284-013-0330-9]23404651
2012Escalera-Zamudio, M., Cobian-Guemes, G., Soto-del Río, M.D., Isa, P., Sánchez-Betancourt, I., Parissi-Crivelli, A., Martinez-Cazares, M.T., Romero, P., Velázquez-Salinas, L., Huerta-Lozano, B., Nelson, M., Montero, H., Vinuesa, P., López, S. and Arias, C.F.. (2012). "Characterization of an influenza A virus in Mexican swine that is related to the A/H1N1/2009 pandemic clade". Virology. 433(1):176-182. [doi:10.1016/j.virol.2012.08.003]22921315
2012Bonilla-Rosso, G., Eguiarte, L.E., Romero, D., Travisano, M. and Souza, V.. (2012). "Understanding microbial community diversity metrics derived from metagenomes: Performance evaluation using simulated data sets". Fems Microbiology Ecology. 82(1):37-49. [doi:10.1111/j.1574-6941.2012.01405.x]22554028
2012Tejerizo, G.T., Lozano, L, González, V., Bustos, P, Romero, D. and Brom, S.. (2012). "Draft genome sequence of the bean-nodulating Sinorhizobium fredii strain GR64". Journal Of Bacteriology. 194(24):6978-6978. [doi:10.1128/JB.01882-12]23209231
2012Calvillo, G. and Romero, D.. (2012). "The dominance assignment problem". DISCRETE OPTIM. 9(3):149-158. [doi:10.1016/j.disopt.2012.06.001]
2012Castillo-Rodal, A.I., Mazari-Hiriart, M., Lloret-Sánchez, L.T., Sachman Ruiz, Bernardo, Vinuesa, P. and López-Vidal, Y. (2012). "Potentially pathogenic nontuberculous mycobacteria found in aquatic systems. Analysis from a reclaimed water and water distribution system in Mexico City". European Journal Of Clinical Microbiology and Infectious Diseases. 31(5):683-694. [doi:10.1007/s10096-011-1359-y]21805195
2012Romero, D. and Alonso-Pecina, F.. (2012). "Ad hoc heuristic for the cover printing problem". DISCRETE OPTIM. 9(1):17-28. [doi:10.1016/j.disopt.2011.10.002]
2012Romero, D.. (2012). "Aspectos bioeticos de la generación de células sintéticas". Valores para la sociedad contemporánea. En qué pueden creer los que no creen. ():456-462.
2011Villaseñor Toledo, Tomas, Dávalos Rodríguez, Araceli Elvira, Lozano Aguirre Beltrán, Luis Fernando, Romero, D. and García-de los Santos, A.. (2011). "Housekeeping genes essential for pantothenate biosynthesis are plasmid-encoded in Rhizobium etli and Rhizobium leguminosarum". Bmc Microbiology. 11():66-66. [doi:10.1186/1471-2180-11-66]21463532
2011Sachman-Ruiz, B., Contreras-Moreira, B., Zozaya, E., Martínez-Garza, C. and Vinuesa, P.. (2011). "Primers4clades: A Web Server to Design Lineage-Specific PCR Primers for Gene-Targeted Metagenomics". Handbook of Molecular Microbial Ecology I: Metagenomics and Complementary Approaches. 1():441-452. [doi:10.1002/9781118010518.ch51]
2011Landeta Escamilla, Cristina, Dávalos Rodríguez, Araceli Elvira, Cevallos, M.A., Geiger, O., Brom, S. and Romero, D.. (2011). "Plasmids with a chromosome-like role in Rhizobia". Journal Of Bacteriology. 193(6):1317-1326. [doi:10.1128/JB.01184-10]21217003
2011Silva-Sanchez, J., Garza-Ramos, J.U., Reyna-Flores, F., Sánchez-Pérez, A, Rojas-Moreno, T., Andrade-Almaraz, V., Pastrana, J., Castro-Romero, J.I., Vinuesa, P., Barrios, H. and Cervantesde, C. (2011). "Extended-spectrum ß-Lactamase-Producing Enterobacteriaceae Causing Nosocomial Infections in Mexico. A Retrospective and Multicenter Study". Archives Of Medical Research. 42(2):156-162. [doi:10.1016/j.arcmed.2011.02.004]21565630
2010Vinuesa, P.. (2010). "multilocus Sequence Analysis and Bacterial Species Phylogeny Estimation". Molecular Phylogeny of Microorganisms. ():41-64.
2009Contreras-Moreira, Bruno, Sachman-Ruiz, Bernardo, Figueroa-Palacios, Irais and Vinuesa, P.. (2009). "primers4clades: A web server that uses phylogenetic trees to design lineage-specific PCR primers for metagenomic and diversity studies". Nucleic Acids Research. 37(SUPPL. 2):95-100. [doi:10.1093/nar/gkp377]19465390
2009Cummings, Stephen P., Gyaneshwar, Prasad, Vinuesa, P., Farruggia, Frank T., Andrews, Mitchell, Humphry, David, Elliott, Geoffrey N., Nelson, Andrew, Orr, Caroline, Pettitt, Deborah, Shah, Gopit R., Santos, Scott R., Krishnan, Hari B., Odee, David, Moreira, Fatima M. S., Sprent, Janet I., Young, J. Peter W. and James, Euan K.. (2009). "Nodulation of Sesbania species by Rhizobium (Agrobacterium) strain IRBG74 and other Rhizobia". Environmental Microbiology. 11(10):2510-2525. [doi:10.1111/j.1462-2920.2009.01975.x]19555380
2009Castellanos, Mildred and Romero, D.. (2009). "The extent of migration of the holliday junction is a crucial factor for gene conversion in Rhizobium etli". Journal Of Bacteriology. 191(15):4987-4995. [doi:10.1128/JB.00111-09]19502410
2009Martinez-Salazar, Jaime M., Salazar, Emmanuel, Encarnacion, Sergio, Ramirez-Romero, Miguel A. and Rivera, Javier. (2009). "Role of the Extracytoplasmic Function Sigma Factor RpoE4 in Oxidative and Osmotic Stress Responses in Rhizobium etli". Journal Of Bacteriology. 191(13):4122-4132. [doi:10.1128/JB.01626-08]19376852
2009Martinez-Salazar, Jaime M., Zuniga-Castillo, Jacobo and Romero, D.. (2009). "Differential roles of proteins involved in migration of Holliday junctions on recombination and tolerance to DNA damaging agents in Rhizobium etli". Gene. 432(1-2):26-32. [doi:10.1016/j.gene.2008.11.009]19071199
2008Renteria, Miguel E., Gandhi, Neha S., Vinuesa, P., Helmerhorst, Erik and Mancera, Ricardo L.. (2008). "A comparative structural bioinformatics analysis of the insulin receptor family ectodomain based on phylogenetic information". Plos One. 3(11):e3667-. [doi:10.1371/journal.pone.0003667]18989367
2008Crossman, Lisa C., Castillo-Ramirez, S., McAnnula, Craig, Lozano, Luis, Vernikos, Georgios S., Acosta, Jose L., Ghazoui, Zara F., Hernandez-Gonzalez, Ismael, Meakin, Georgina, Walker, Alan W., Hynes, Michael F., Young, J. Peter W., Downie, J. Allan, Romero, D., Johnston, Andrew W. B., Davila, Guillermo, Parkhill, Julian and González, V.. (2008). "A common genomic framework for a diverse assembly of plasmids in the symbiotic nitrogen fixing bacteria". Plos One. 3(7):e2567-. [doi:10.1371/journal.pone.0002567]18596979
2008Vinuesa, P., Rojas-Jimenez, Keilor, Contreras-Moreira, Bruno, Mahna, Suresh K., Prasad, Braj Nandan, Moe, Hla, Selvaraju, Suresh Babu, Thierfelder, Heidemarie and Werner, Dietrich. (2008). "multilocus Sequence Analysis for assessment of the biogeography and evolutionary genetics of four Bradyrhizobium species that nodulate soybeans on the asiatic continent". Applied And Environmental Microbiology. 74(22):6987-6996. [doi:10.1128/AEM.00875-08]18791003
2008Sepulveda, E., Perez-Mendoza, D., Ramirez-Romero, M. A., Soto, M. J., López-Lara, I.M.,, Geiger, O., Sanjuan, J., Brom, S. and Romero, D.. (2008). "Modulation of conjugative activity of rhizobial symbiotic plasmids by repression and transcriptional interference". FEBS JOURNAL. 275(1):49-49.
2008Sepulveda, Edgardo, Perez-Mendoza, Daniel, Ramirez-Romero, Miguel A., Soto, Maria J., López-Lara, I.M.,, Geiger, O., Sanjuan, Juan, Brom, S. and Romero, D.. (2008). "Transcriptional interference and repression modulate the conjugative ability of the symbiotic plasmid of Rhizobium etli". Journal Of Bacteriology. 190(12):4189-4197. [doi:10.1128/JB.00041-08]18424522
2008García-de los Santos, A., Lopez, Erika, Cubillas, Ciro A., Noel, K. Dale, Brom, S. and Romero, D.. (2008). "Requirement of a plasmid-encoded catalase for survival of Rhizobium etli CFN42 in a polyphenol-rich environment". Applied And Environmental Microbiology. 74(8):2398-2403. [doi:10.1128/AEM.02457-07]18310436
2008Cerritos, Rene, Vinuesa, P., Eguiarte, Luis E., Herrera-Estrella, Luis, Alcaraz-Peraza, Luis D., Arvizu-Gomez, Jackeline L., Olmedo, Gabriela, Ramirez, Enrique, Siefert, Janet L. and Souza, Valeria. (2008). "Bacillus coahuilensis sp. nov., a moderately halophilic species from a desiccation lagoon in the Cuatro Ciénegas Valley in Coahuila, Mexico". International Journal Of Systematic And Evolutionary Microbiology. 58(4):919-923. [doi:10.1099/ijs.0.64959-0]18398195
2007Romero, D. and Zertuche, F.. (2007). "Number of different binary functions generated by NK -Kauffman networks and the emergence of genetic robustness". J MATH PHYS. 48(8):083506-. [doi:10.1063/1.2768747]
2007Sohlenkamp, C., Galindo-Lagunas, Kanaan A., Guan, Ziqiang, Vinuesa, P., Robinson, Sally, Thomas-Oates, Jane, Raetz, Christian R. H. and Geiger, O.. (2007). "The lipid lysyl-phosphatidylglycerol is present in membranes of Rhizobium tropici CIAT899 and confers increased resistance to polymyxin B under acidic growth conditions". Molecular Plant-Microbe Interactions. 20(11):1421-1430. [doi:10.1094/MPMI-20-11-1421]17977153
2007Granados Baeza, Manuel Jesús, Gómez Hernández, Nicolás, Mora, Yolanda, Delgado, M.J., Romero, D. and Girard, L.. (2007). "Novel reiterated Fnr-type proteins control the production of the symbiotic terminal oxidase cbb3 in Rhizobium etli CFN42". Molecular Plant-Microbe Interactions. 20(10):1241-1249. [doi:10.1094/MPMI-20-10-1241]17918626
2007Romero, D. and Sánchez-Arroyo, A.. (2007). "Adding evidence to the Erdos-Faber-Lovász conjecture". Ars Combinatoria. 85():71-84.
2007Ramirez-Trujillo, J. A., Encarnacion, S., Salazar, E., García-de los Santos, A., Dunn, M.F., Emerich, D. W., Calva, E. and Hernandez-Lucas, I.. (2007). "Functional characterization of the Sinorhizobium meliloti acetate metabolism genes aceA, SMc00767, and glcB". Journal Of Bacteriology. 189(16):5875-5884. [doi:10.1128/JB.00385-07]17526694
2007Pinero, Silvia, Rivera, Javier, Romero, D., Cevallos, M.A., Martinez, Alfredo, Bolivar, Francisco and Gosset, Guillermo. (2007). "Tyrosinase from Rhizobium etli is involved in nodulation efficiency and symbiosis-associated stress resistance". JOURNAL OF MOLECULAR MICROBIOLOGY AND BIOTECHNOLOGY. 13(1-3):35-44. [doi:10.1159/000103595]17693711
2007Poggio, Sebastian, Abreu-Goodger, Cei, Fabela, Salvador, Osorio, Aurora, Dreyfus, Georges, Vinuesa, P. and Camarena, Laura. (2007). "A complete set of flagellar genes acquired by horizontal transfer coexists with the endogenous flagellar system in Rhodobacter sphaeroides". Journal Of Bacteriology. 189(8):3208-3216. [doi:10.1128/JB.01681-06]17293429
2007Romero, D., García-de los Santos, A. and Brom, S.. (2007). "Essential plasmids in Rhizobium.". Plasmid. 57(2):227-227.
2007Brom, S., García-de los Santos, A. and Romero, Laura Cervantes David. (2007). "Conjugative transfer of Rhizobium plasmids.". Plasmid. 57(2):220-220.
2007Top, Eva and Romero, D.. (2007). "Evolution and ecology - Summary". Plasmid. 57(2):223-225.
2007Sepulveda, Edgardo, Perez-Mendoza, Daniel, Munoz, Socorro, Ramirez-Romero, Miguel A., Soto, Maria Jose, Cervantes, Laura, Herrera-Cervera, Jose A., López-Lara, I.M.,, Geiger, O., Sanuan, Juan, Brom, S. and Romero, D.. (2007). "Regulation of conjugal transfer of the Rhizobium etli Sym plasmid.". Plasmid. 57(2):220-221.
2007Silva Romero, Claudia Verónica and Vinuesa, P.. (2007). "Ecología evolutiva de bacterias y el concepto de especie: el caso de los rizobios". Ecología Molecular. ():351-392.
2006Albino, U., Saridakis, D. P., Ferreira, M. C., Hungria, M., Vinuesa, P. and Andrade, G.. (2006). "High diversity of diazotrophic bacteria associated with the carnivorous plant Drosera villosa var. villosa growing in oligotrophic habitats in Brazil". PLANT AND SOIL. 287(1-2):199-207. [doi:10.1007/s11104-006-9066-7]
2006Silva Romero, Claudia Verónica, Vinuesa, P. and Martínez-Romero, E.. (2006). "Species delineation and biogeography of Rhizobia: Two case studies". Proceedings of the 12th International Congress on Molecular Plant-Microbe Interactions. 5():319-324.
2005Rojas-Jimenez, K., Sohlenkamp, C., Geiger, O., Martínez-Romero, E., Werner, D. and Vinuesa, P.. (2005). "A CIC chloride channel homolog and ornithine-containing membrane lipids of Rhizobium tropici CIAT899 are involved in symbiotic efficiency and acid tolerance". Molecular Plant-Microbe Interactions. 18(11):1175-1185. [doi:10.1094/MPMI-18-1175]16353552
2005Silva Romero, Claudia Verónica, Vinuesa, P., Eguiarte, L.E., Souza, V. and Martínez-Romero, E.. (2005). "Evolutionary genetics and biogeographic structure of Rhizobium gallicum sensu lato, a widely distributed bacterial symbiont of diverse legumes". MOLECULAR ECOLOGY. 14(13):4033-4050. [doi:10.1111/j.1365-294X.2005.02721.x]16262857
2005Perez-Mendoza, D, Sepulveda, E, Pando, V, Munoz, S, Nogales, J, Olivares, J, Soto, MJ, Herrera-Cervera, JA, Romero, D., Brom, S. and Sanjuan, J. (2005). "Identification of the rctA gene, which is required for repression of conjugative transfer of rhizobial symbiotic megaplasmids". Journal Of Bacteriology. 187(21):7341-7350. [doi:10.1128/JB.187.21.7341-7350.2005]16237017
2005Santoyo, G, Martinez-Salazar, JM, Rodriguez, C and Romero, D.. (2005). "Gene conversion tracts associated with crossovers in Rhizobium etli". Journal Of Bacteriology. 187(12):4116-4126. [doi:10.1128/JB.187.12.4116-4126.2005]15937174
2005Santoyo Pizano, Gustavo and Romero, D.. (2005). "Gene conversion and concerted evolution in bacterial genomes". Fems Microbiology Reviews. 29(2):169-183. [doi:10.1016/j.femsre.2004.10.004]15808740
2005Vinuesa, P., Leon-Barrios, M., Silva Romero, Claudia Verónica, Willems, A., Jarabo-Lorenzo, A., Perez-Galdona, R., Werner, D. and Martínez-Romero, E.. (2005). "Bradyrhizobium canariense sp. nov., an acid-tolerant endosymbiont that nodulates endemic genistoid legumes (Papilionoideae: Genisteae) from the Canary Islands, along with Bradyrhizobium japonicum bv. genistearum, Bradyrhizobium genospecies alpha and Bradyrhizobium genospecies beta". International Journal Of Systematic And Evolutionary Microbiology. 55(2):569-575. [doi:10.1099/ijs.0.63292-0]15774626
2005Vinuesa, P., Silva Romero, Claudia Verónica, Werner, D. and Martínez-Romero, E.. (2005). "Population genetics and phylogenetic inference in bacterial molecular systematics: The roles of migration and recombination in Bradyrhizobium species cohesion and delineation". Molecular Phylogenetics And Evolution. 34(1):29-54. [doi:10.1016/j.ympev.2004.08.020]15579380
2005Romero, D.. (2005). "Revista Latinoamericana de Microbiologia: Message from the Editor in chief". Revista Latinoamericana De Microbiologia. 47(1-2):5-5.
2004Zuniga-Castillo, J, Romero, D. and Martinez-Salazar, JM. (2004). "The recombination genes addAB are not restricted to gram-positive bacteria: Genetic analysis of the recombination initiation enzymes recF and addAB in Rhizobium etli". Journal Of Bacteriology. 186(23):7905-7913. [doi:10.1128/JB.186.23.7905-7913.2004]15547262
2004Pérez, J., Pazos, R.A., Frausto, J., Rodríguez, G., Romero, D. and Cruz, L.. (2004). "A statistical approach for algorithm selection". LECT NOTES COMPUT SC. 3059():417-431.
2004Brom, S., Girard, L., Tun Garrido, Cristina Soleda, García-de los Santos, A., Bustos Arcos, Virginia Patricia, González, V. and Romero, D.. (2004). "Transfer of the symbiotic plasmid of Rhizobium etli CFN42 requires cointegration with p42a, which may be mediated by site-specific recombination". Journal Of Bacteriology. 186(22):7538-7548. [doi:10.1128/JB.186.22.7538-7548.2004]15516565
2004Medrano Soto, Luis Arturo, Moreno Hagelsieb, Gabriel, Vinuesa, P., Christen, J.A. and Collado-Vides, J.. (2004). "Successful lateral transfer requires codon usage compatibility between foreign genes and recipient genomes". MOLECULAR BIOLOGY AND EVOLUTION. 21(10):1884-1894. [doi:10.1093/molbev/msh202]15240837
2004Sepulveda, Edgardo, Perez-Mendoza, Daniel, Munoz, Socorro, Ramirez-Romero, Miguel A., Soto, Maria Jose, Cervantes, Laura, Herrera-Cervera, Jose A., López-Lara, I.M.,, Geiger, O., Sanuan, Juan, Brom, S. and Romero, D.. (2004). "Identification of functional mob regions in Rhizobium etli: Evidence for self-transmissibility of the symbiotic plasmid pRetCFN42d". Journal Of Bacteriology. 186(17):5753-5761. [doi:10.1128/JB.186.17.5753-5761.2004]15317780
2003Romero, D. and Zertuche, F.. (2003). "The asymptotic number of attractors in the random map model". J PHYS A-MATH GEN. 36(13):3691-3700. [doi:10.1088/0305-4470/36/13/304]
2003González, V., Bustos Arcos, Virginia Patricia, Ramírez Romero, Miguel Ángel, Medrano Soto, Luis Arturo, Salgado Osorio, Heladia, Hernández González, Ismael Luis, Hernández Celis, Juan Carlos, Quintero Hernández, Verónica, Moreno Hagelsieb, Gabriel, Girard, L., Rodríguez Sánchez, Oscar, Flores López, Margarita, Cevallos, M.A., Collado-Vides, J., Romero, D. and Dávila Ramos, José Guillermo. (2003). "The mosaic structure of the symbiotic plasmid of Rhizobium etli CFN42 and its relation to other symbiotic genome compartments.". Genome Biology. 4(6):R36-. [doi:10.1186/gb-2003-4-6-r36]12801410
2003Pérez O., J., Pazos R., R.A., Romero, D., Santaolaya S., R., Rodriguez O., G. and Sosa S., V.. (2003). "Adaptive and scalable allocation of data-objects in the web". LECT NOTES COMPUT SC. 2667():134-143.
2003Vargas, MD, Encarnacion, S, Davalos, A, Reyes-Perez, A, Mora, Y, García-de los Santos, A., Brom, S. and Mora, J.. (2003). "Only one catalase, katG, is detectable in Rhizobium etli, and is encoded along with the regulator OxyR on a plasmid replicon". MICROBIOLOGY-SGM. 149(5):1165-1176. [doi:10.1099/mic.0.25909-0]12724378
2003Tun-Garrido, C, Bustos, P, González, V. and Brom, S.. (2003). "Conjugative transfer of p42a from Rhizobium etli CFN42, which is required for mobilization of the symbiotic plasmid, is regulated by quorum sensing". Journal Of Bacteriology. 185(5):1681-1692. [doi:10.1128/JB.185.5.1681-1692.2003]12591886
2003Silva, C, Vinuesa, P., Eguiarte, LE, Martínez-Romero, E. and Souza, V. (2003). "Rhizobium etli and Rhizobium gallicum nodulate common bean (Phaseolus vulgaris) in a traditionally managed milpa plot in Mexico: Population genetics and biogeographic implications". Applied And Environmental Microbiology. 69(2):884-893. [doi:10.1128/AEM.69.2.884-893.2003]12571008
2003Vinuesa, P., Neumann-Silkow, F., Pacios-Bras, C., Spaink, H.P., Martínez-Romero, E. and Werner, D.. (2003). "Genetic analysis of a pH-regulated operon from Rhizobium tropici CIAT899 involved in acid tolerance and nodulation competitiveness". Molecular Plant-Microbe Interactions. 16(2):159-168. [doi:10.1094/MPMI.2003.16.2.159]12575750
2003Jahn, OJ, Davila, G, Romero, D. and Noel, KD. (2003). "BacS: An abundant bacteroid protein in Rhizobium etli whose expression ex planta requires nifA". Molecular Plant-Microbe Interactions. 16(1):65-73. [doi:10.1094/MPMI.2003.16.1.65]12580283
2002Ramírez Alfonsín, J.L. and Romero, D.. (2002). "Embeddability of the combinohedron". DISCRETE MATH. 254(1-3):473-483. [doi:10.1016/S0012-365X(01)00298-9]
2002Encarnacion, S, del Vargas, M, Dunn, M.F., Davalos, A, Mendoza, G, Mora, Y and Mora, J.. (2002). "aniA regulates reserve polymer accumulation and global protein expression in Rhizobium etli". Journal Of Bacteriology. 184(8):2287-2295. [doi:10.1128/JB.184.8.2287-2295.2002]11914361
2002García-de los Santos, A., Morales, A, Baldoma, L, Clark, SRD, Brom, S., Yost, CK, Hernandez-Lucas, I, Aguilar, J and Hynes, MF. (2002). "The glcB locus of Rhizobium leguminosarum VF39 encodes an arabinose-inducible malate synthase". Canadian Journal Of Microbiology. 48(10):922-932. [doi:10.1139/w02-091]12489782
2002Falcon, LI, Escobar-Briones, E and Romero, D.. (2002). "Nitrogen fixation patterns displayed by cyanobacterial consortia in Alchichica crater-lake, Mexico". Hydrobiologia. 467(1-3):71-78. [doi:10.1023/A:1014984629985]
2001Díaz-Leal, H., Martínez-Bernal, J. and Romero, D.. (2001). "Dimension of the fixed point set of a nilpotent endomorphism on the flag variety". BOL SOC MAT MEX. 7(1):23-33.
2000Martinez-Salazar, JM and Romero, D.. (2000). "Role of the ruvB gene in homologous and homeologous recombination in Rhizobium etli". Gene. 243(1-2):125-131. [doi:10.1016/S0378-1119(99)00548-X]10675620
2000Girard, L., Brom, S., Dávalos Rodríguez, Araceli Elvira, López, O., Soberón Chávez, Mario and Romero, D.. (2000). "Differential regulation of fixN-reiterated genes in Rhizobium etli by a novel fixL-fixK cascade". Molecular Plant-Microbe Interactions. 13(12):1283-1292. [doi:10.1094/MPMI.2000.13.12.1283]11106020
2000Flores, M, Mavingui, P, Perret, X, Broughton, WJ, Romero, D., Hernández, G., Davila, G and Palacios, R. (2000). "Prediction, identification, and artificial selection of DNA rearrangements in Rhizobium: Toward a natural genomic design". PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 97(16):9138-9143. [doi:10.1073/pnas.97.16.9138]10922070
2000Brom, S., García-de los Santos, A., Cervantes, L, Palacios, R and Romero, D.. (2000). "In Rhizobium etli symbiotic plasmid transfer, nodulation competitivity and cellular growth require interaction among different replicons". Plasmid. 44(1):34-43. [doi:10.1006/plas.2000.1469]10873525
2000Valencia-Morales, E and Romero, D.. (2000). "Recombination enhancement by replication (RER) in Rhizobium etli". Genetics. 154(3):971-983. 10757747
1999Romero, D., Barrón, C. and Gómez, S.. (1999). "The optimal geometry of Lennard-Jones clusters: 148-309". COMPUT PHYS COMMUN. 123(1-3):87-96.
1999Romero, D., Martinez-Salazar, J, Ortiz, E, Rodriguez, C and Valencia-Morales, E. (1999). "Repeated sequences in bacterial chromosomes and plasmids: A glimpse from sequenced genomes". Research In Microbiology. 150(9-10):735-743. [doi:10.1016/S0923-2508(99)00119-9]10673011
1999Wang, ET, Roel, MA, García-de los Santos, A., Martínez, J., Cevallos, M.A. and Martínez-Romero, E.. (1999). "Rhizobium etli bv. mimosae, a novel biovar isolated from Mimosa affinis". INTERNATIONAL JOURNAL OF SYSTEMATIC BACTERIOLOGY. 49(4):1479-1491. [doi:10.1099/00207713-49-4-1479]10555329
1999Thieffry, D. and Romero, D.. (1999). "The modularity of biological regulatory networks". Biosystems. 50(1):49-59. [doi:10.1016/S0303-2647(98)00087-2]10235650
1999Brom, S. and Romero, D.. (1999). "Plasmid biology 98: international symposium on plasmid biology". Plasmid. 41(2):141-177. 10087219
1999Corvera Poire, Adriana De La Concepción, Prome, D., Prome, J.C., Martínez-Romero, E. and Romero, D.. (1999). "The nolL gene from Rhizobium etli determines nodulation efficiency by mediating the acetylation of the fucosyl residue in the nodulation factor". Molecular Plant-Microbe Interactions. 12(3):236-246. [doi:10.1094/MPMI.1999.12.3.236]10065560
1998Mavingui, P, Laeremans, T, Flores, M, Romero, D., Martínez-Romero, E. and Palacios, R. (1998). "Genes essential for nod factor production and nodulation are located on a symbiotic amplicon (AMPRtrCFN299pc60) in Rhizobium tropici". Journal Of Bacteriology. 180(11):2866-2874. 9603874
1998Rodriguez, C and Romero, D.. (1998). "Multiple recombination events maintain sequence identity among members of the nitrogenase multigene family in Rhizobium etli". Genetics. 149(2):785-794. 9611191
1997Barrón, C., Gómez, S. and Romero, D.. (1997). "Lower energy icosahedral atomic clusters with incomplete core". APPLIED MATHEMATICS LETTERS. 10(5):25-28. [doi:10.1016/S0893-9659(97)00078-5]
1997Romero, D. and Palacios de la Lama, Rafael. (1997). "Gene amplification and genomic plasticity in prokaryotes". ANNUAL REVIEW OF GENETICS. 31():91-111. [doi:10.1146/annurev.genet.31.1.91]9442891
1997MirandaRios, J, Morera, C, Taboada, H, Davalos, A, Encarnacion, S, Mora, J. and Soberon, M. (1997). "Expression of thiamin biosynthetic genes (thiCOGE) and production of symbiotic terminal oxidase cbb(3), in Rhizobium etli". Journal Of Bacteriology. 179(22):6887-6893. [doi:10.1128/jb.179.22.6887-6893.1997]9371431
1997García-de los Santos, A. and Brom, S.. (1997). "Characterization of two plasmid-borne lps beta loci of Rhizobium etli required for lipopolysaccharide synthesis and for optimal interaction with plants". Molecular Plant-Microbe Interactions. 10(7):891-902. [doi:10.1094/MPMI.1997.10.7.891]9304861
1997Mavingui Malonda, Aime Dieudonne Patrick, Flores López, Margarita, Romero, D., Martínez-Romero, E. and Palacios de la Lama, Rafael. (1997). "Generation of Rhizobium Strains with Improved Symbiotic Properties by Random Dna Amplification (RDA)". Nature Biotechnology. 15(6):564-569. [doi:10.1038/nbt0697-564]9181580
1997Romero, D. and Sánchez-Flores, A.. (1997). "Omnipotence in stretchable two-dimensional scaling". MATH SOC SCI. 33(1):1-21. [doi:10.1016/S0165-4896(96)00817-7]
1996Dunn, M.F., Encarnacion, S, Araiza, G, Vargas, MC, Davalos, A, Peralta, H, Mora, Y and Mora, J.. (1996). "Pyruvate carboxylase from Rhizobium etli: Mutant characterization, nucleotide sequence, and physiological role". Journal Of Bacteriology. 178(20):5960-5970. [doi:10.1128/jb.178.20.5960-5970.1996]8830693
1996Girard, L., Valderrama, B, Palacios, R, Romero, D. and Davila, G. (1996). "Transcriptional activity of the symbiotic plasmid of Rhizobium etli is affected by different environmental conditions". MICROBIOLOGY-SGM. 142(10):2847-2856. [doi:10.1099/13500872-142-10-2847]
1996Valderrama, B, Davalos, A, Girard, L., Morett, E and Mora, J.. (1996). "Regulatory proteins and CIS-acting elements involved in the transcriptional control of Rhizobium etli reiterated nifH genes". Journal Of Bacteriology. 178(11):3119-3126. [doi:10.1128/jb.178.11.3119-3126.1996]8655489
1996Santos, AGD, Brom, S. and Romero, D.. (1996). "Rhizobium plasmids in bacteria-legume interactions". World Journal Of Microbiology & Biotechnology. 12(2):119-125. [doi:10.1007/BF00364676]24415159
1996Romero, D., Martinez, L. and Fionova, L.. (1996). "Computer simulation of grain boundary spatial distribution in a three-dimensional polycrystal with cubic structure". ACTA MATER. 44(1):391-402. [doi:10.1016/1359-6454(95)00142-X]
1996Barrón, C., Gómez, S. and Romero, D.. (1996). "Archimedean polyhedron structure yields a lower energy atomic cluster". APPLIED MATHEMATICS LETTERS. 9(5):75-78. [doi:10.1016/0893-9659(96)00076-6]
1995Romero, D., MARTINEZSALAZAR, J, Girard, L., Brom, S., DAVILA, G, PALACIOS, R, FLORES, M and RODRIGUEZ, C. (1995). "Discrete amplifiable regions (amplicons) in the symbiotic plasmid of Rhizobium etli CFN42". Journal Of Bacteriology. 177(4):973-980. [doi:10.1128/jb.177.4.973-980.1995]7860608
1994Garduño- Juárez, R. and Romero, D.. (1994). "Heuristic methods in conformational space search of peptides". THEOCHEM-J MOL STRUC. 308(C):115-123. [doi:10.1016/0166-1280(94)80097-9]
1993Flores López, Margarita, Brom, S., Stepkowsky, Tomász, Girard, L., Dávila Ramos, José Guillermo, Romero, D. and Palacios de la Lama, Rafael. (1993). "Gene amplification in Rhizobium: Identification and in vivo cloning of discrete amplifiable DNA regions (amplicons) from Rhizobium leguminosarum biovar phaseoli". PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 90(11):4932-4936. [doi:10.1073/pnas.90.11.4932]8506337
1992Brom, S., García-de los Santos, A., STEPKOWSKI, T, FLORES, M, DAVILA, G, Romero, D. and PALACIOS, R. (1992). "DIFFERENT PLASMIDS OF Rhizobium-leguminosarum BV phaseoli ARE REQUIRED FOR OPTIMAL SYMBIOTIC PERFORMANCE". Journal Of Bacteriology. 174(16):5183-5189. [doi:10.1128/jb.174.16.5183-5189.1992]1644746
1992Morales, L.B., Garduñojuárez, R. and Romero, D.. (1992). "The multiple-minima problem in small peptides revisited. The threshold accepting approach". J BIOMOL STRUCT DYN. 9(5):951-957. [doi:10.1080/07391102.1992.10507969]1524708
1991MARTINEZSALAZAR, JM, Romero, D., Girard, L. and DAVILA, G. (1991). "Molecular cloning and characterization of the recA gene of Rhizobium phaseoli and construction of recA mutants". Journal Of Bacteriology. 173(10):3035-3040. [doi:10.1128/jb.173.10.3035-3040.1991]2022610
1991Romero, D., Brom, S., MARTINEZSALAZAR, J, Girard, L., PALACIOS, R and DAVILA, G. (1991). "Amplification and deletion of a nod-nif region in the symbiotic plasmid of Rhizobium phaseoli". Journal Of Bacteriology. 173(8):2435-2441. [doi:10.1128/jb.173.8.2435-2441.1991]2013567
1991VAZQUEZ, M, DAVALOS, A, DELASPENAS, A, SANCHEZ, F and QUINTO, C. (1991). "NOVEL ORGANIZATION OF THE COMMON NODULATION GENES IN Rhizobium-leguminosarum BV. phaseoli STRAINS". Journal Of Bacteriology. 173(3):1250-1258. [doi:10.1128/jb.173.3.1250-1258.1991]1991718
1991Brom, S., García-de los Santos, A., Girard, L., DAVILA, G, PALACIOS, R and Romero, D.. (1991). "High-frequency rearrangements in Rhizobium leguminosarum bv. phaseoli plasmids". Journal Of Bacteriology. 173(3):1344-1346. [doi:10.1128/jb.173.3.1344-1346.1991]1991727
1991Morales, L.B., Garduñojuárez, R. and Romero, D.. (1991). "Applications of simulated annealing to the multiple-minima problem in small peptides". J BIOMOL STRUCT DYN. 8(4):721-735. [doi:10.1080/07391102.1991.10507841]2059338
1990Romero, D.. (1990). "Easy transportation-like problems on K-dimensional arrays". J OPTIMIZ THEORY APP. 66(1):137-147. [doi:10.1007/BF00940537]
1990Romero, D. and Sánchez-Flores, A.. (1990). "Methods for the one-dimensional space allocation problem". COMPUT OPER RES. 17(5):465-473. [doi:10.1016/0305-0548(90)90051-8]
1990Martínez-Romero, E., Romero, D. and PALACIOS, R. (1990). "The Rhizobium Genome". CRITICAL REVIEWS IN PLANT SCIENCES. 9(1):59-93. [doi:10.1080/07352689009382282]
1988Brom, S., Martínez-Romero, E., DAVILA, G and PALACIOS, R. (1988). "NARROW-HOST-RANGE AND BROAD-HOST-RANGE SYMBIOTIC PLASMIDS OF Rhizobium SPP STRAINS THAT NODULATE Phaseolus-VULGARIS". Applied And Environmental Microbiology. 54(5):1280-1283. 16347637
1988Martínez-Romero, E., FLORES, M, Brom, S., Romero, D., DAVILA, G and PALACIOS, R. (1988). "Rhizobium phaseoli: A molecular genetics view". PLANT AND SOIL. 108(1):179-184. [doi:10.1007/BF02370113]
1988FLORES, M, González, V., PARDO, MA, Leija, A, Martínez-Romero, E., Romero, D., Piñero, D., DAVILA, G and PALACIOS, R. (1988). "Genomic instability in Rhizobium phaseoli.". Journal Of Bacteriology. 170(3):1191-1196. [doi:10.1128/jb.170.3.1191-1196.1988]3343217
1988Romero, D., Singleton, P., SEGOVIA, L, MORETT, E, Bohlool, B.B., PALACIOS, R and DAVILA, G. (1988). "EFFECT OF NATURALLY-OCCURRING nif REITERATIONS ON SYMBIOTIC EFFECTIVENESS IN Rhizobium-phaseoli". Applied And Environmental Microbiology. 54(3):848-850. 16347593
1987FLORES, M, González, V., Brom, S., Martínez-Romero, E., PINERO, D, Romero, D., DAVILA, G and PALACIOS, R. (1987). "Reiterated DNA sequences in Rhizobium and Agrobacterium spp.". Journal Of Bacteriology. 169(12):5782-5788. [doi:10.1128/jb.169.12.5782-5788.1987]3450286
1991Girard, L., FLORES, M, Brom, S., Romero, D., PALACIOS, R and DAVILA, G. (1991). "Structural complexity of the symbiotic plasmid of Rhizobium leguminosarum bv. phaseoli". Journal Of Bacteriology. 173(8):2411-2419. [doi:10.1128/jb.173.8.2411-2419.1991]2013564
2005Vinuesa, P., Silva Romero, Claudia Verónica, Lorite, M.J., Izaguirre-Mayoral, M.L., Bedmar, E.J. and Martínez-Romero, E.. (2005). "Molecular systematics of Rhizobia based on maximum likelihood and Bayesian phylogenies inferred from rrs, atpD, recA and nifH sequences, and their use in the classification of Sesbania microsymbionts from Venezuelan wetlands". Systematic And Applied Microbiology. 28(8):702-716. [doi:10.1016/j.syapm.2005.05.007]16261860
2002Brom, S., Girard, L., García-de los Santos, A., Sanjuan-Pinilla, J.M., Olivares, J. and Sanjuan, J.. (2002). "Conservation of plasmid-encoded traits among bean-nodulating Rhizobium species". Applied And Environmental Microbiology. 68(5):2555-2561. [doi:10.1128/AEM.68.5.2555-2561.2002]11976134
2006Ormeño Orrillo, Ernesto Aldo, Vinuesa, P., Zuniga-Davila, D.Z. and Martínez-Romero, E.. (2006). "Molecular diversity of native bradyrhizobia isolated from Lima bean (Phaseolus lunatus L.) in Peru". Systematic And Applied Microbiology. 29(3):253-262. [doi:10.1016/j.syapm.2005.09.002]16564961
2009Martinez-Salazar, Jaime M., Sandoval-Calderon, Mario, Guo, Xianwu, Castillo-Ramirez, S., Reyes, Alma, Loza, Maria G., Rivera, Javier, Alvarado-Affantranger, Xochitl, Sanchez, Federico, González, V., Davila, Guillermo and Ramirez-Romero, Miguel A.. (2009). "The Rhizobium etli RpoH1 and RpoH2 sigma factors are involved in different stress responses". MICROBIOLOGY-SGM. 155(2):386-397. [doi:10.1099/mic.0.021428-0]19202087
2011Cervantes de la Luz, Laura, Bustos Arcos, Virginia Patricia, Girard, L., Santamaria Gutiérrez, Rosa Isela, Dávila Ramos, José Guillermo, Vinuesa, P., Romero, D. and Brom, S.. (2011). "The conjugative plasmid of a bean-nodulating Sinorhizobium fredii strain is assembled from sequences of two Rhizobium plasmids and the chromosome of a Sinorhizobium strain". Bmc Microbiology. 11(1):1-11. [doi:10.1186/1471-2180-11-149]21702991
2005Guillen-Navarro, K, Araiza, G, García-de los Santos, A., Mora, Y and Dunn, M.F.. (2005). "The Rhizobium etli bioMNY operon is involved in biotin transport". Fems Microbiology Letters. 250(2):209-219. [doi:10.1016/j.femsle.2005.07.020]16099603
2011Acosta, Jose L., Eguiarte, L.E., Santamaria Gutiérrez, Rosa Isela, Bustos Arcos, Virginia Patricia, Vinuesa, P., Martínez-Romero, E., Dávila Ramos, José Guillermo and González, V.. (2011). "Genomic lineages of Rhizobium etli revealed by the extent of nucleotide polymorphisms and low recombination". Bmc Evolutionary Biology. 11(1):305-305. [doi:10.1186/1471-2148-11-305]22004448
2005Shamseldin, AAY, Vinuesa, P., Thierfelder, H and Werner, D. (2005). "Rhizobium etli and Rhizobium gallicum nodulate Phaseolus vulgaris in Egyptian soils and display cultivar-dependent symbiotic efficiency". Symbiosis. 38(2):145-161.
2013Hernández Tamayo, Rogelio, Sohlenkamp, C., Puente, J.L., Brom, S. and Romero, D.. (2013). "Characterization of IntA, a bidirectional site-specific recombinase required for conjugative transfer of the symbiotic plasmid of Rhizobium etli CFN42". Journal Of Bacteriology. 195(20):4668-4677. [doi:10.1128/JB.00714-13]23935046
2002Cevallos, M.A., Porta, H, Izquierdo, J, Tun-Garrido, C, Garcia-de-los-Santos, A, Davila, G and Brom, S.. (2002). "Rhizobium etli CFN42 contains at least three plasmids of the repABC family: A structural and evolutionary analysis". Plasmid. 48(2):104-116. [doi:10.1016/S0147-619X(02)00119-1]12383728
2016Hernández-Tamayo, R., Torres-Tejerizo, G., Brom, S. and Romero, D.. (2016). "Site-specific bacterial chromosome engineering mediated by IntA integrase from Rhizobium etli". Bmc Microbiology. 16(1):133-133. [doi:10.1186/s12866-016-0755-y]27357704
2001López, O., Morera, C., Miranda-Ríos, J., Girard, L., Romero, D. and Soberón Chávez, Mario. (2001). "Regulation of gene expression in response to oxygen in Rhizobium etli: Role of FnrN in fixNOQP expression and in symbiotic nitrogen fixation". Journal Of Bacteriology. 183(24):6999-7006. [doi:10.1128/JB.183.24.6999-7006.2001]11717256
2000Reyes, J.D., Tabche, M.L., Morera, C., Girard, L., Romero, D., Krol, E., Miranda, J. and Soberón Chávez, Mario. (2000). "Expression pattern of Rhizobium etli ccmIEFH genes involved in c-type cytochrome maturation". Gene. 250(1-2):149-157. [doi:10.1016/S0378-1119(00)00176-1]10854788
2017Contreras-Moreira B, Cantalapiedra CP, García-Pereira MJ, Gordon SP, Vogel JP, Igartua E, Casas AM and Vinuesa, P.. (2017). "Analysis of plant pan-genomes and transcriptomes with GET_HOMOLOGUES-EST, a clustering solution for sequences of the same species". Frontiers In Plant Science. 8():184-184. [doi:10.3389/fpls.2017.00184]28261241
1999Barrón, C., Gómez, S., Romero, D. and Saavedra, A.. (1999). "A genetic algorithm for Lennard-Jones atomic clusters". APPLIED MATHEMATICS LETTERS. 12(7):85-90. [doi:10.1016/S0893-9659(99)00106-8]
2018Aguilar A, Mora Y, Dávalos A, Girard, L., Mora, J. and Peralta H. (2018). "Analysis of genome sequence and symbiotic ability of rhizobial strains isolated from seeds of common bean (Phaseolus vulgaris).". Bmc Genomics. 19(1):645-645. [doi:10.1186/s12864-018-5023-0]30165827
2017Silva, Claudia, Betancor, Laura, Garcia, Coralith, Astocondor, Lizeth, Hinostroza, Noemi, Bisio, Julieta, Rivera, Javier, Perezgasga, Lucia, Perez Escanda, Victoria, Yim, Lucia, Jacobs, Jan, Garcia-del Portillo, Francisco, Chabalgoity, Jose A., Puente, Jose L. and SalmoIber CYTED Network. (2017). "Characterization of Salmonella enterica isolates causing bacteremia in Lima, Peru, using multiple typing methods". Plos One. 12(12):e0189946-. [doi:10.1371/journal.pone.0189946]29267322
2017Romero, D., Torres-Irineo, E., Kern, S., Orellana, R. and Hernandez-Cerda, M.E.. (2017). "Determination of the soil moisture recession constant from satellite data: A case study of the yucatan peninsula". INT J REMOTE SENS. 38(20):5793-5813. [doi:10.1080/01431161.2017.1346844]
2005Romero, D. and Zertuche, F.. (2005). "Grasping the connectivity of random functional graphs". STUD SCI MATH HUNG. 42(1):1-9. [doi:10.1556/SScMath.42.2005.1.1]
2017Ochoa-Sánchez LE and Vinuesa, P.. (2017). "Evolutionary genetic analysis uncovers multiple species with distinct habitat preferences and antibiotic resistance phenotypes in the Stenotrophomonas maltophilia complex". Frontiers in Microbiology. 8(AUG):1548-1548. [doi:10.3389/fmicb.2017.01548]28861062
2017Santamaría RI, Bustos P, Pérez-Carrascal OM, Miranda-Sánchez F, Vinuesa, P., Martínez-Flores I, Juárez S, Lozano L, Martínez-Romero, E., Cevallos, M.A., Romero, D., Dávila G, Ormeño-Orrillo E and González, V.. (2017). "Complete genome sequences of eight Rhizobium symbionts associated with common bean (Phaseolus vulgaris)". Genome Announcements. 5(30):e00645-17-. [doi:10.1128/genomeA.00645-17]28751391
2017Bustos P, Santamaría RI, Pérez-Carrascal OM, Acosta JL, Lozano L, Juárez S, Martínez-Flores I, Martínez-Romero, E., Cevallos, M.A., Romero, D., Dávila G, Vinuesa, P., Miranda F, Ormeño E and González, V.. (2017). "Complete genome sequences of three Rhizobium gallicum symbionts associated with common bean (Phaseolus vulgaris)". Genome Announcements. 5(11):e00030-17-. [doi:10.1128/genomeA.00030-17]28302777
2015López-Fuentes E, Torres-Tejerizo G, Cervantes L and Brom, S.. (2015). "Genes encoding conserved hypothetical proteins localized in the conjugative transfer region of plasmid pRet42a from Rhizobium etli CFN42 participate in modulating transfer and affect conjugation from different donors". Frontiers in Microbiology. 5():793-793. [doi:10.3389/fmicb.2014.00793]25642223