Functional Genomics of Prokaryotes

Dr. Michael Dunn´s group. Carbon and nitrogen metabolism of Rhizobia, specially the biochemical characterization of anaplerotic enzymes from the tricarboxylic acids cycle, such as Pyruvate carboxylase, Pyruvate dehydrogenase and Phosphoenolpyruvate carboxylase.
Dr. Sergio Encarnación´s group. This group was pioneer in the field of proteomics in Mexico and Latin America. This tool has been used to characterize the metabolism of several strains of Rhizobia, in free living and in symbiosis with legumes; as also in the formation of biofilms and in stress.
Dr. Jaime Mora´s group. The carbon and nitrogen metabolism of Rhizobia, the physiological characterization of growth and the requirement of the vitamins biotin and thiamine, the sensing of metabolites (extra or intracellular) by the receptor tar and its influence on growth. Also, study of genomics and evolution.

Group Staff

Jaime Mora CelisResearcherEmeritus 3291687
Sergio Manuel Encarnación GuevaraResearcherFull 3291899
Michael Frederick Dunn ResearcherAssociate 120 4773
Omar Alejandro Aguilar VeraLaboratory TechnicianLaboratory 3139944
Sandra Contreras MartínezLaboratory TechnicianLaboratory 3114662
Rafael Díaz MendezLaboratory TechnicianLaboratory 3139944
Magdalena Hernández OrtizLaboratory TechnicianLaboratory 3139944
Humberto Peralta DíazLaboratory TechnicianLaboratory 3290865
María del Carmen Vargas LagunasLaboratory TechnicianLaboratory 3139944
Hermenegildo Taboada CastroLaboratory TechnicianLaboratory 376 0882
Oliver Castillo QuevedoSupport 3291687
Ángel Gabriel Martínez BatallarSupport 3139944
Alma Ruth Reyes GonzálezLaboratory TechnicianLaboratory 3291687
Nohemí Salinas JazmínPostdoctoral 3291899

Group Publications

2018Paik, Y.K., Lane, L., Kawamura, T., Chen, Y.J., Cho, J.Y., Labaer, J., Yoo, J.S., Domont, G., Corrales, F., Omenn, G.S., Archakov, A., Encarnación, S, Lui, S., Salekdeh, G.H., Cho, J.Y., Kim, C.Y. and Overall, C.M.. (2018). "Launching the C-HPP neXt-CP50 Pilot Project for Functional Characterization of Identified Proteins with No Known Function". J PROTEOME RES. 17(12):4042-4050. [doi:10.1021/acs.jproteome.8b00383]30269496
2018Aguilar, Cesar, Martínez-Batallar, AG, Flores, Noemi, Moreno-Avitia, Fabian, Encarnación, S, Escalante, Adelfo and Bolivar, Francisco. (2018). "Analysis of differentially upregulated proteins in ptsHIcrr(-) and rppH(-) mutants in Escherichia coli during an adaptive laboratory evolution experiment". Applied Microbiology And Biotechnology. 102(23):10193-10208. [doi:10.1007/s00253-018-9397-3]30284012
2018Guevara-Luna, J., Alvarez-Fitz, P., Ríos-Leal, E., Acevedo-Quiroz, M., Encarnación, S, Moreno-Godinez, M.E., Castellanos-Escamilla, M., Toribio-Jiménez, J. and Romero-Ramírez, Y.. (2018). "Biotransformation of benzo[a]pyrene by the thermophilic bacterium Bacillus licheniformis M2-7". World Journal Of Microbiology & Biotechnology. 34(7):88-. [doi:10.1007/s11274-018-2469-9]29886516
2018Becerra-Rivera, V.A., Bergström, E., Thomas-Oates, J. and Dunn, MF. (2018). "Polyamines are required for normal growth in Sinorhizobium meliloti". MICROBIOLOGY-SGM. 164(4):600-613. [doi:10.1099/mic.0.000615]29619919
2017Hernandez-Vargas, Maria J., Gil, Jeovanis, Lozano, L, Pedraza-Escalona, Martha, Ortiz, Ernesto, Encarnación, S, Alagon, Alejandro and Corzo, Gerardo. (2017). "Proteomic and transcriptomic analysis of saliva components from the hematophagous reduviid Triatoma Pallidipennis". Journal Of Proteomics. 162():30-39. [doi:10.1016/j.jprot.2017.04.022]28442446
2017Gil, Jeovanis, Ramirez-Torres, Alberto and Encarnación, S. (2017). "Lysine acetylation and cancer: A proteomics perspective". Journal Of Proteomics. 150():297-309. [doi:10.1016/j.jprot.2016.10.003]27746255
2017Gil J, Ramírez-Torres A, Chiappe D, Luna-Peñaloza J, Fernandez-Reyes FC, Arcos-Encarnación B, Contreras-Martínez, S and Encarnación, S. (2017). "Lysine acetylation stoichiometry and proteomics analyses reveal pathways regulated by sirtuin 1 in human cells". JOURNAL OF BIOLOGICAL CHEMISTRY. 292(44):18129-18144. [doi:10.1074/jbc.M117.784546]28893905
2017Meneses, N., Taboada, H, Dunn, MF, Vargas, MC, Buchs, N., Heller, M. and Encarnación, S. (2017). "The naringenin-induced exoproteome of Rhizobium etli CE3". Archives Of Microbiology. 199(5):737-755. [doi:10.1007/s00203-017-1351-8]28255691
2017Encarnación, S. (2017). "The dawn and the first twenty-five years of proteomics in Mexico: a personal chronicle". Boletin Medico del Hospital Infantil de Mexico. 74(3):208-211. [doi:10.1016/j.bmhimx.2017.03.006]29382488
2017Patiño-Lopez G. and Encarnación, S. (2017). "Clinical Proteomics in Mexico: where do we stand?". Boletin Medico del Hospital Infantil de Mexico. 74(3):173-174. [doi:10.1016/j.bmhimx.2017.04.001]29382483
2017Herrera Y., Contreras-Martínez, S, Hernández M., Álvarez L., Mora Y. and Encarnación, S. (2017). "Displacers improve the selectivity of phosphopeptide enrichment by metal oxide affinity chromatography". Boletin Medico del Hospital Infantil de Mexico. 74(3):200-207. [doi:10.1016/j.bmhimx.2017.03.008]29382487
2017Gamez-Reyes, Aurora, Becerra-Lobato, Noe, Augusto Ramirez-Trujillo, Jose, Martínez-Romero, E, Dunn, MF and Hernandez-Lucas, Ismael. (2017). "The Rhizobium leucaenae CFN 299 pSym plasmid contains genes expressed in free life and symbiosis, as well as two replication systems". ANNALS OF MICROBIOLOGY. 67(3):263-273. [doi:10.1007/s13213-017-1257-3]
2017Garcia-Gomez, Elizabeth, Jaso-Vera, Marcos E., Juarez-Verdayes, Marco A., Alcantar-Curiel, Maria D., Zenteno, Juan C., Betanzos-Cabrera, Gabriel, Peralta, H, Rodriguez-Martinez, Sandra, Cancino-Diaz, Mario E., Jan-Roblero, Janet and Cancino-Diaz, Juan C.. (2017). "The95 G mutation in the 5'untranslated region of the norA gene increases efflux activity in Staphylococcus epidermidis isolates". Microbial Pathogenesis. 103():139-148. [doi:10.1016/j.micpath.2016.12.021]28017900
2017Dunn, MF. (2017). "Rhizobial Amino Acid Metabolism: Polyamine Biosynthesis and Functions". Handbook Of Microbial Metabolism Of Amino Acids. ():352-370.
2016Alvarado-Delgado A, Perales Ortiz G, Tello-López ÁT, Encarnación, S, Conde R, Martínez-Batallar, AG, Moran-Francia K and Lanz-Mendoza H. (2016). "Infection with Plasmodium berghei ookinetes alters protein expression in the brain of Anopheles albimanus mosquitoes". PARASITES & VECTORS. 9(1):542-542. [doi:10.1186/s13071-016-1830-9]27724938
2016Peralta, H, Aguilar, A, Díaz-Mendez, R, Mora Y, Martínez-Batallar, AG, Salazar E, Vargas, MC, Martínez-Romero, E, Encarnación, S, Girard, L and Mora, J. (2016). "Genomic studies of nitrogen-fixing rhizobial strains from Phaseolus vulgaris seeds and nodules". Bmc Genomics. 17(1):1-1. [doi:10.1186/s12864-016-3053-z]27601031
2016Reyes-Perez, Agustin, Vargas, MC, Hérnandez, M, Aguirre-von-Wobeser, Eneas, Perez-Rueda, Ernesto and Encarnación, S. (2016). "Transcriptomic analysis of the process of biofilm formation in Rhizobium etli CFN42". Archives Of Microbiology. 198(9):847-860. [doi:10.1007/s00203-016-1241-5]27226009
2016Alfonso-Gordillo, Guadalupe, Cristiani-Urbina, Eliseo, Mateo Flores-Ortiz, Cesar, Peralta, H, Carlos Cancino-Diaz, Juan, Antonio Cruz-Maya, Juan and Jan-Roblero, Janet. (2016). "Stenotrophomonas maltophilia isolated from gasoline-contaminated soil is capable of degrading methyl tert-butyl ether". ELECTRONIC JOURNAL OF BIOTECHNOLOGY. 23():12-20. [doi:10.1016/j.ejbt.2016.06.006]
2016Yadira Lopez-Chavez, Mariana, Guillen-Navarro, Karina, Bertolini, Vincenzo, Encarnación, S, Hérnandez, M, Sanchez-Moreno, Irene and Damon, Anne. (2016). "Proteomic and morphometric study of the in vitro interaction between Oncidium Sphacelatum Lindl. (Orchidaceae) and Thanatephorus sp RG26 (Ceratobasidiaceae)". Mycorrhiza. 26(5):353-365. [doi:10.1007/s00572-015-0676-x]26732875
2016Augusto Ramirez-Trujillo, Jose, Dunn, MF, Suarez-Rodriguez, Ramon and Hernandez-Lucas, Ismael. (2016). "The Sinorhizobium meliloti glyoxylate cycle enzyme isocitrate lyase (aceA) is required for the utilization of poly-ß-hydroxybutyrate during carbon starvation". ANNALS OF MICROBIOLOGY. 66(2):921-924. [doi:10.1007/s13213-015-1131-0]
2016Moreno Castillo, Benjamin, Dunn, MF, Guillen Navarro, Karina, Holguin Melendez, Francisco, Hérnandez, M, Encarnación, S and Huerta Palacios, Graciela. (2016). "Antifungal performance of extracellular chitinases and culture supernatants of Streptomyces galilaeus CFFSUR-B12 against Mycosphaerella Fijiensis Morelet". World Journal Of Microbiology & Biotechnology. 32(3):1-12. [doi:10.1007/s11274-015-1993-0]26873555
2016Guzman-Flores, Juan M., Flores-Perez, Elsa C., Hérnandez, M, Lopez-Briones, Sergio, Ramirez-Emiliano, Joel, Encarnación, S and Perez-Vazquez, Victoriano. (2016). "Comparative Proteomics of Liver of the Diabetic Obese db/db and Non-Obese or Diabetic Mice". Current Proteomics. 13(3):231-236. [doi:10.2174/1570164613666160722102430]
2015Dunn, MF. (2015). "Key roles of microsymbiont amino acid metabolism in Rhizobia-legume interactions". Critical Reviews in Microbiology. 41(4):411-451. [doi:10.3109/1040841X.2013.856854]24601835
2015Hernandez, Victor M., Girard, L, Hernandez-Lucas, Ismael, Vazquez, Alejandra, Ortiz-Ortiz, Catalina, Díaz-Mendez, R and Dunn, MF. (2015). "Genetic and biochemical characterization of arginine biosynthesis in Sinorhizobium meliloti 1021". MICROBIOLOGY-SGM. 161(8):1671-1682. [doi:10.1099/mic.0.000122]26271664
2015Ormeño-Orrillo, E., Servín-Garcidueñas, L.E., Rogel, MA, González, V, Peralta, H, Mora, J, Martínez, J and Martínez-Romero, E. (2015). "Taxonomy of Rhizobia and agrobacteria from the Rhizobiaceae family in light of genomics". Systematic And Applied Microbiology. 38(4):287-291. [doi:10.1016/j.syapm.2014.12.002]25660942
2015Ramon-Perez, Miriam L., Diaz-Cedillo, Francisco, Contreras-Rodriguez, Araceli, Betanzos-Cabrera, Gabriel, Peralta, H, Rodriguez-Martinez, Sandra, Cancino-Diaz, Mario E., Jan-Roblero, Janet and Cancino Diaz, Juan C.. (2015). "Different sensitivity levels to norspermidine on biofilm formation in clinical and commensal Staphylococcus epidermidis strains". Microbial Pathogenesis. 79():8-16. [doi:10.1016/j.micpath.2014.12.004]25549879
2014Althabegoiti, M.J., Ormeño Orrillo, Ernesto Aldo, Lozano, L, Tejerizo, G.T., Rogel, MA, Mora, J and Martínez-Romero, E. (2014). "Characterization of Rhizobium Grahamii extrachromosomal replicons and their transfer among Rhizobia". Bmc Microbiology. 14(1):6-6. [doi:10.1186/1471-2180-14-6]24397311
2014de Luna-Valdez, L. A., Martínez-Batallar, AG, Hérnandez, M, Encarnacion-Gueuara, S., Ramos-Vega, M., Lopez-Bucio, J. S., Leon, P. and Guevara-Garcia, A. A.. (2014). "Proteomic analysis of chloroplast biogenesis (clb) mutants uncovers novel proteins potentially involved in the development of Arabidopsis thaliana chloroplasts". Journal Of Proteomics. 111(SI):148-164. [doi:10.1016/j.jprot.2014.07.003]25154054
2014Trejo-Hernandez, Abigail, Andrade-Dominguez, Andres, Hérnandez, M and Encarnación, S. (2014). "Interspecies competition triggers virulence and mutability in Candida albicans-pseudomonas Aeruginosa mixed biofilms". ISME JOURNAL. 8(10):1974-1988. [doi:10.1038/ismej.2014.53]24739628
2014Mora, Yolanda, Díaz-Mendez, R, Vargas, MC, Peralta, H, Guerrero, G, Aguilar, A, Encarnación, S, Girard, L and Mora, J. (2014). "Nitrogen-fixing rhizobial strains isolated from common bean seeds: Phylogeny, physiology, and genome analysis". Applied And Environmental Microbiology. 80(18):5644-5654. [doi:10.1128/AEM.01491-14]25002426
2014Villarreal, J.M., Becerra-Lobato, N., Rebollar-Flores, J.E., Medina-Aparicio, L., Carbajal-Gómez, E., Zavala-Garcia, M.L., Vázquez, A, Gutierrez-Ríos, R.M., Encarnación, S, Martínez-Batallar, AG, Calva, E. and Hernández-Lucas, I.. (2014). "The Salmonella enterica serovar Typhi ltrR-ompR-ompC-ompF genes are involved in resistance to the bile salt sodium deoxycholate and in bacterial transformation". Molecular Microbiology. 92(5):1005-1024. [doi:10.1111/mmi.12610]24720747
2014Pérez-Vázquez, V., Guzmán-Flores, J.M., Mares-Alvarez, D., Hérnandez, M, Macias-Cervantes, M.H., Ramírez-Emiliano, J. and Encarnación, S. (2014). "Differential Proteomic Analysis of the Pancreas of Diabetic db/db Mice Reveals the Proteins Involved in the Development of Complications of Diabetes Mellitus". International Journal Of Molecular Sciences. 15(6):9579-9593. [doi:10.3390/ijms15069579]24886809
2014Andrade Domínguez, Andrés, Salazar Bustamante, Emmanuel, Vargas, MC, Kolter, R. and Encarnación, S. (2014). "Eco-evolutionary feedbacks drive species interactions". ISME JOURNAL. 8(5):1041-1054. [doi:10.1038/ismej.2013.208]24304674
2014Cocotl-Yañez, M., Moreno, S., Encarnación, S, López-Pliego, L., Castañeda, M. and Espín, G.. (2014). "A small heat-shock protein (Hsp20) regulated by RpoS is essential for cyst desiccation resistance in Azotobacter Vinelandii". MICROBIOLOGY-SGM. 160(3):479-487. [doi:10.1099/mic.0.073353-0]24385478
2014Rosas Pérez, Tania, Rosenblueth, M, Rincón-Rosales, R., Mora, J and Martínez-Romero, E. (2014). "Genome sequence of "Candidatus Walczuchella monophlebidarum" the flavobacterial endosymbiont of Llaveia axin axin (Hemiptera: Coccoidea: Monophlebidae)". Genome Biology And Evolution. 6(3):714-726. [doi:10.1093/gbe/evu049]24610838
2014Gutiérrez-Roman, M.I., Dunn, MF, Tinoco-Valencia, R., Holguin-Melendez, F., Huerta-Palacios, G. and Guillen-Navarro, K.. (2014). "Potentiation of the synergistic activities of chitinases chiA, chiB and chiC from Serratia marcescens CFFSUR-B2 by chitobiase (Chb) and chitin binding protein (CBP)". World Journal Of Microbiology & Biotechnology. 30(1):33-42. [doi:10.1007/s11274-013-1421-2]23824666
2013Higareda Almaraz, Juan Carlos, Valtierra Gutiérrez, Ilse Ariadna, Hérnandez, M, Contreras-Martínez, S, Hernádez, E. and Encarnación, S. (2013). "Analysis and Prediction of Pathways in HeLa Cells by Integrating Biological Levels of Organization with Systems-Biology Approaches". Plos One. 8(6):UNSP e65433-. [doi:10.1371/journal.pone.0065433]23785426
2013Esparza-Garrido, R.R., Velazquez-Flores, M.A., Diegoperez-Ramírez, J., López-Aguilar, E., Siordia-Reyes, G., Hérnandez, M, Martínez-Batallar, AG, Encarnación, S, Salamanca-Gomez, F. and Arenas-Aranda, D.J.. (2013). "A proteomic approach of pediatric astrocytomas: MiRNAs and network insight". Journal Of Proteomics. 94():162-175. [doi:10.1016/j.jprot.2013.09.009]24060999
2013Martínez-Aguilar, L, Salazar-Salazar, C., Díaz-Mendez, R, Caballero Mellado, José de Jesús, Hirsch, A.M., Vasquez-Murrieta, M.S. and Estrada De Los Santos, Paulina. (2013). "Burkholderia Caballeronis sp nov., a nitrogen fixing species isolated from tomato (Lycopersicon esculentum) with the ability to effectively nodulate Phaseolus vulgaris". ANTONIE VAN LEEUWENHOEK INTERNATIONAL JOURNAL OF GENERAL AND MOLECULAR; MICROBIOLOGY. 104(6):1063-1071. [doi:10.1007/s10482-013-0028-9]24057982
2013Ramírez, M, Guillén, G., Fuentes, SI, Iñiguez Rabago, Luis Pedro, Aparicio Fabre, Rosaura, Zamorano-Sánchez, D, Encarnación, S, Panzeri, D., Castiglioni, B., Cremonesi, P., Strozzi, F., Stella, A., Girard, L, Sparvoli, F. and Hernández, G. (2013). "Transcript profiling of common bean nodules subjected to oxidative stress". Physiologia Plantarum. 149(3):389-407. [doi:10.1111/ppl.12040]23432573
2013Gutiérrez-Román, M. I., Dunn, MF, Tinoco-Valencia, F., Holguín-Meléndez, K., Guillen Navarro, Griselda Karina and Huerta-Palacios, G.. (2013). "Antifungal activity of chitinases (chiA, chiC and chiB) produced by Serratia marcescens CFFSUR-B2 against Mycosphaerella Fijiensis causal agent of black sigatoka in banana (Musa spp.)". Acta Phytopathol. 43():96-.
2013de Luna,L. A., León, P., Encarnación, S and Guevara-García, A. A.. (2013). "Chloroplast omics". Barh Delmya. ():-.
2012Resendis Antonio, Osbaldo, Hérnandez, M, Pérez-Tejada Domínguez, Yolanda and Encarnación, S. (2012). "Functional Modules, Structural Topology, and Optimal Activity in Metabolic Networks". Plos Computational Biology. 8(10):1002720-. [doi:10.1371/journal.pcbi.1002720]23071431
2012Juárez-Verdayes, M.A., González-Uribe, P.M., Peralta, H, Rodríguez-Martínez, S., Jan-Roblero, J., Escamilla-Hernández, R., Cancino-Díaz, M.E. and Cancino-Díaz, J.C.. (2012). "Detection of hssS, hssR, hrtA, and hrtB genes and their expression by hemin in Staphylococcus epidermidis". Canadian Journal Of Microbiology. 58(9):1063-1072. [doi:10.1139/W2012-086]22906238
2012Chino-Flores, C., Dantan-González, E., Vázquez-Ramos, A., Tinoco-Valencia, R., Díaz-Mendez, R, Sánchez-Salinas, E., Castrejón-Godinez, M.L., Ramos-Quintana, F. and Ortíz-Hernandez, M.L.. (2012). "Isolation of the opdE gene that encodes for a new hydrolase of Enterobacter sp capable of degrading organophosphorus pesticides". BIODEGRADATION. 23(3):387-397. [doi:10.1007/s10532-011-9517-6]22065283
2012Gutiérrez-Roman, M.I., Holguin-Melendez, F., Bello-Mendoza, R., Guillén-Navarro, K., Dunn, MF and Huerta-Palacios, G.. (2012). "Production of prodigiosin and chitinases by tropical Serratia marcescens strains with potential to control plant pathogens". World Journal Of Microbiology & Biotechnology. 28(1):145-153. [doi:10.1007/s11274-011-0803-6]22806790
2011Peralta, H, Guerrero, G, Aguilar, A and Mora, J. (2011). "Sequence variability of Rhizobiales orthologs and relationship with physico-chemical characteristics of proteins". Biology Direct. 6():48-48. [doi:10.1186/1745-6150-6-48]21970442
2011Dunn, MF. (2011). "Anaplerotic function of phosphoenolpyruvate carboxylase in Bradyrhizobium japonicum USDA110". Current Microbiology. 62(6):1782-1788. [doi:10.1007/s00284-011-9928-y]21479798
2011Gómez Hernández, Nicolás, Reyes-González, A, Sanchez, C., Pérez-Tejada Domínguez, Yolanda, Delgado, M.J. and Girard, L. (2011). "Regulation and Symbiotic Role of nirK and norC Expression in Rhizobium etli". Molecular Plant-Microbe Interactions. 24(2):233-245. [doi:10.1094/MPMI-07-10-0173]21043576
2011Díaz-Mendez, R, Vargas, MC, Villalobos López, Miguel Angel, Peralta, H, Pérez-Tejada Domínguez, Yolanda, Encarnación, S, Girard, L and Mora, J. (2011). "argC orthologs from Rhizobiales show diverse profiles of transcriptional efficiency and functionality in Sinorhizobium meliloti". Journal Of Bacteriology. 193(2):460-472. [doi:10.1128/JB.01010-10]21075924
2010Salazar, Emmanuel, Diaz-Mejia, J. Javier, Moreno-Hagelsieb, Gabriel, Martínez-Batallar, AG, Mora, Yolanda, Mora, J and Encarnación, S. (2010). "Characterization of the nif A-RpoN regulon in Rhizobium etli in free life and in symbiosis with Phaseolus vulgaris". Applied And Environmental Microbiology. 76(13):4510-4520. [doi:10.1128/AEM.02007-09]20453139
2010González, V, Acosta, Jose L., Santamaria, RI, Bustos, P, Fernandez, Jose L., Hernandez Gonzalez, Ismael L., Díaz-Mendez, R, Flores, Margarita, Palacios, Rafael, Mora, J and Davila, Guillermo. (2010). "Conserved symbiotic plasmid DNA sequences in the multireplicon pangenomic structure of Rhizobium etli". Applied And Environmental Microbiology. 76(5):1604-1614. [doi:10.1128/AEM.02039-09]20048063
2010Mora, J. (2010). "La UNAM por México". Comisión Universitaria para los festejos de los 100 años de la Universidad Nacional Autónoma de México. ():325-348.
2009Martinez-Salazar, Jaime M., Salazar, Emmanuel, Encarnación, S, Ramirez-Romero, Miguel A. and Rivera, J. (2009). "Role of the Extracytoplasmic Function Sigma Factor RpoE4 in Oxidative and Osmotic Stress Responses in Rhizobium etli". Journal Of Bacteriology. 191(13):4122-4132. [doi:10.1128/JB.01626-08]19376852
2009Rodriguez-Alvarez, Mauricio, Mendoza-Hernandez, Guillermo, Encarnación, S, Jose Calva, Juan and Lopez-Vidal, Yolanda. (2009). "Phenotypic differences between BCG vaccines at the proteome level". Tuberculosis. 89(2):126-135. [doi:10.1016/]19231290
2009Balleza, Enrique, Lopez-Bojorquez, Lucia N., Martinez-Antonio, Agustino, Resendis-Antonio, Osbaldo, Lozada-Chavez, Irma, Balderas-Martinez, Yalbi I., Encarnación, S and Collado-Vides, J. (2009). "Regulation by transcription factors in bacteria: Beyond description". Fems Microbiology Reviews. 33(1):133-151. [doi:10.1111/j.1574-6976.2008.00145.x]19076632
2008Contreras-Rodriguez, Araceli, Quiroz-Limon, Jose, Martins, Ana M., Peralta, H, Avila-Calderon, Eric, Sriranganathan, Nammalwar, Boyle, Stephen M. and Lopez-Merino, Ahide. (2008). "Enzymatic, immunological and phylogenetic characterization of Brucella suis urease". Bmc Microbiology. 8():121-121. [doi:10.1186/1471-2180-8-121]18638408
2008Rodriguez-Perez, Mario A., Medina-Aunon, Alberto, Encarnación, S, Bernal-Silvia, Sofia, Barrera-Saldana, Hugo and Pablo Albar-Ramirez, Juan. (2008). "In Silico analysis of protein neoplastic biomarkers for cervix and uterine cancer". Clinical and Translational Oncology. 10(10):604-617. [doi:10.1007/s12094-008-0261-2]18940741
2008Martínez-Aguilar, L, Díaz-Mendez, R, Pena-Cabriales, Juan Jose, Estrada-de los Santos, Paulina, Dunn, MF and Caballero-Mellado, Jesus. (2008). "Multichromosomal genome structure and confirmation of diazotrophy in novel plant-associated Burkholderia species". Applied And Environmental Microbiology. 74(14):4574-4579. [doi:10.1128/AEM.00201-08]18502926
2008Hernandez-Lucas, I., Gallego-Hernandez, A. L., Encarnación, S, Fernandez-Mora, M., Martínez-Batallar, AG, Salgado, H, Oropeza, R. and Calva, E.. (2008). "The LysR-type transcriptional regulator LeuO controls expression of several genes in Salmonella enterica serovar typhi". Journal Of Bacteriology. 190(5):1658-1670. [doi:10.1128/JB.01649-07]18156266
2008Taboada, H, Encarnación, S, Vargas, MC, Mora, Yolanda, Miranda-Rios, Juan, Soberon, Mario and Mora, J. (2008). "Thiamine limitation determines the transition from aerobic to fermentative-like metabolism in Rhizobium etli CE3". Fems Microbiology Letters. 279(1):48-55. [doi:10.1111/j.1574-6968.2007.01006.x]18177306
2008Mora, J, Peralta, H and Encarnación, S. (2008). "Nitrógeno, fisiología y genómica". Descubrimientos y Aportaciones Científicas y Humanísticas Mexicanas en el Siglo XX. (0):642-651.
2008Velázquez-Arellano A. and Encarnación, S. (2008). "Role of Proteomics in the Study of Nutrition". JOURNAL OF NUTRIGENETICS AND NUTRIGENOMICS. 1(1-2):55-58. [doi:10.1159/000109875]19918115
2008Velazquez-Arellano, A., Cerevisiae, S., Elegans, C., Norvergicus, R., Ortega-Cuellar, D., Hernandez-Mendoza, A., Gonzalez-Alvarez, R., Encarnación, S, Salazar, E., Uribe-Carvajal, S. and Galvez-Mariscal, A.. (2008). "Biotin Is a Major Regulator of Carbon Fluxes Genes in Eukaryotes". JOURNAL OF NUTRIGENETICS AND NUTRIGENOMICS. 1(6):294-294.
2008Encarnación, S, Salazar Bustamante, Emmanuel, Martínez-Batallar, AG, Hérnandez, M, Reyes Pérez, Agustín, Vargas, MC, Contreras-Martínez, S, Elizalde Contreras, José Miguel, Noguez, R., Meneses, M., Bueno, O., Sánchez, R., Pérez-Tejada Domínguez, Yolanda and Mora, J. (2008). "Proteomic and Transcriptomic Approaches to Study Global Genome Expression in Rhizobium etli and Sinorhizobium meliloti". Current Plant Science and Biotechnology. Agriculture Biological Nitrogen Fixation, Sustainable Agriculture and the Environment. 42():231-232.
2008Vargas, MC, Villalobos, M.A., Díaz-Mendez, R, Flores, M.A., Contreras-Martínez, S, Encarnación, S, Pérez-Tejada Domínguez, Yolanda, Dunn, MF, Girard, L and Mora, J. (2008). "Comparative Analysis of argC protein expression in Rhizobium species". Current Plant Science and Biotechnology. Agriculture Biological Nitrogen Fixation, Sustainable Agriculture and the Environment. 42(0):239-240.
2007Resendis Antonio, Osbaldo, Reed, J.L., Encarnación, S, Collado-Vides, J and Palsson, B.O.. (2007). "Metabolic reconstruction and modeling of nitrogen fixation in Rhizobium etli". Plos Computational Biology. 3(10):1887-1895. [doi:10.1371/journal.pcbi.0030192]17922569
2007Ramirez-Trujillo, J. A., Encarnación, S, Salazar, E., García-de los Santos, A, Dunn, MF, Emerich, D. W., Calva, E. and Hernandez-Lucas, I.. (2007). "Functional characterization of the Sinorhizobium meliloti acetate metabolism genes aceA, SMc00767, and glcB". Journal Of Bacteriology. 189(16):5875-5884. [doi:10.1128/JB.00385-07]17526694
2007Peralta, H. (2007). "Azospirillum, micorrizas y Rhizobium. Biofertilizantes microbianos para la agricultura sustentable". Agricultura sustentable y biofertilizantes. 1():118-129.
2006Batista, Cesar V. F., D'Suze, Gina, Gomez-Lagunas, Froylan, Zamudio, Fernando Z., Encarnación, S, Sevcik, Carlos and Possani, Lourival D.. (2006). "Proteomic analysis of Tityus discrepans scorpion venom and amino acid sequence of novel toxins". Proteomics. 6(12):3718-3727. [doi:10.1002/pmic.200500525]16705749
2006Caballero-Mellado, J., Tenorio Salgado, S., Onofre Lemus, J., Castro González, R., Estrada De Los Santos, P., Paredes Valdez, G., Peña-Cabriales, J.J., Díaz-Mendez, R and Martínez-Aguilar, L. (2006). "Mechanisms involved in the promotion of plant growth expressed by new species of nitrogen-fixer Burkholderia". Revista Latinoamericana De Microbiologia. 48(2):155-156.
2006Encarnación, S. (2006). "Genómica y genómica funcional en microbiología". Revista Latinoamericana de Microbiología. 48(2):131-132. 17578085
2006Encarnación, S, Salazar Bustamante, Emmanuel, Martínez-Batallar, AG, Hérnandez, M, Reyes Pérez, Agustín, Contreras-Martínez, S, Vargas, MC, Domínguez Vidaña, Rocío, Gonzaga Jáuregui, Claudia Gabriela, Pérez-Tejada Domínguez, Yolanda, Rivero Zaragoza, María Ricarda and Mora, J. (2006). "GENÓMICA FUNCIONAL EN RIZOBIACEAS". Revista Latinoamericana de Microbiología. 48(2):135-141.
2006Peralta, H. (2006). "Biofertilizantes. Alternativa sustentable para la agricultura en méxico". El Abasto. Panorama de la distribución alimenticia en México. ():190-195.
2005Encarnación, S, Hernandez, M, Martínez-Batallar, AG, Contreras-Martínez, S, Vargas, MD and Mora, J. (2005). "Comparative proteomics using 2-D gel electrophoresis and mass spectrometry as tools to dissect stimulons and regulons in bacteria with sequenced or partially sequenced genomes". BIOLOGICAL PROCEDURES ONLINE. 7():117-135. [doi:10.1251/bpo110]16145578
2005Flores López, Margarita, Morales Reyes, Lucía Guadalupe, Ávila Casanueva, Agustin Bernardo, González, V, Bustos, P, García-Alonso, D, Pérez-Tejada Domínguez, Yolanda, Guo, Xianwu, Collado-Vides, J, Pinero, D., Dávila Ramos, José Guillermo, Mora, J and Palacios de la Lama, Rafael. (2005). "Diversification of DNA sequences in the symbiotic genome of Rhizobium etli". Journal Of Bacteriology. 187(21):7185-7192. [doi:10.1128/JB.187.21.7185-7192.2005]16237002
2005Chavéz-Zamora, J.C., Salazar Bustamante, Emmanuel and Encarnación, S. (2005). "Global analisis of the genome expresion in Sinorhizobium meliloti strain 1021, using microarray". Current Plant Science and Biotechnology. Agriculture Biological Nitrogen Fixation, Sustainable Agriculture and the Environment. 41():331-.
2005Vargas, MC, Encarnación, S, Girard, L, Reyes Pérez, Agustín, Pérez-Tejada Domínguez, Yolanda and Mora, J. (2005). "Characterization of the alternative protection programs against oxidative-stress in free life and simbiosis from Rhizobium etli". Current Plant Science and Biotechnology. Agriculture Biological Nitrogen Fixation, Sustainable Agriculture and the Environment. 41():331-.
2005Encarnación, S, Salazar Bustamante, Emmanuel, Hérnandez, M, Martínez-Batallar, AG, García, J., Flores, H., Reyes Pérez, Agustín, Vargas, MC, Contreras-Martínez, S, Pérez-Tejada Domínguez, Yolanda and Mora, J. (2005). "Proteomic and transcriptomic approaches to study global genome expression in free-living and symbiotically-associated Rhizobium etli and Sinorhizobium meliloti". Current Plant Science and Biotechnology. Agriculture Biological Nitrogen Fixation, Sustainable Agriculture and the Environment. 41():142-.
2005Encarnación, S. (2005). "The dawn of functional genomics in nitrogen fixation Research". Genomes and Genomics of Nitrogen Fixing Organisms. ():143-163.
2004Encarnación, S, Garcia, Juan, Hérnandez, M, Vargas, MC, Contreras, Sandra and Mora, J. (2004). "Protein expression during biofilm formation in Rhizobium etli and Sinorhizobium meliloti". MOLECULAR & CELLULAR PROTEOMICS. 3(10, S):150-150.
2004Vargas, MC, Encarnación, S, Girard, L, Reyes, A., Mora, Y. and Mora, J. (2004). "Physiological and proteome characterizations of oxidative-stress response in Rhizobium etli during free life and symbiosis with Phaseolus vulgaris.". MOLECULAR & CELLULAR PROTEOMICS. 3(10, S):160-160.
2004Peralta, H, Mora, Y, Salazar, E, Encarnación, S, Palacios, R and Mora, J. (2004). "Engineering the nifH promoter region and abolishing poly-ß -hydroxybutyrate accumulation in Rhizobium etli enhance nitrogen fixation in symbiosis with Phaseolus vulgaris". Applied And Environmental Microbiology. 70(6):3272-3281. [doi:10.1128/AEM.70.6.3272-3281.2004]15184121
2004Dunn, MF, Araiza, G and Mora, J. (2004). "Biochemical characterization of a Rhizobium etli monovalent cation-stimulated acyl-coenzyme A carboxylase with a high substrate specificity constant for propionyl-coenzyme A". MICROBIOLOGY-SGM. 150(2):399-406. [doi:10.1099/mic.0.26779-0]14766918
2003Medina, G., Juarez, K., Díaz-Mendez, R and Soberon-Chavez, Gloria. (2003). "Transcriptional regulation of pseudomonas Aeruginosa rhlR, encoding a quorum-sensing regulatory protein". MICROBIOLOGY-SGM. 149(11):3073-3081. [doi:10.1099/mic.0.26282-0]14600219
2003Encarnación, S, Guzman, Y, Dunn, MF, Hernandez, M, Vargas, MD and Mora, J. (2003). "Proteome analysis of aerobic and fermentative metabolism in Rhizobium etli CE3". Proteomics. 3(6):1077-1085. [doi:10.1002/pmic.200300427]12833533
2003Vargas, MD, Encarnación, S, Dávalos, A, Reyes-Perez, A, Mora, Y, García-de los Santos, A, Brom, S and Mora, J. (2003). "Only one catalase, katG, is detectable in Rhizobium etli, and is encoded along with the regulator OxyR on a plasmid replicon". MICROBIOLOGY-SGM. 149(5):1165-1176. [doi:10.1099/mic.0.25909-0]12724378
2002Encarnación, S, Vargas, MC, Dunn, MF, Dávalos, A, Mendoza, G, Mora, Y and Mora, J. (2002). "aniA regulates reserve polymer accumulation and global protein expression in Rhizobium etli". Journal Of Bacteriology. 184(8):2287-2295. [doi:10.1128/JB.184.8.2287-2295.2002]11914361
2002Dunn, MF, Araiza, G, Encarnación, S, Vargas, MC and Mora, J. (2002). "Effect of aniA (carbon flux regulator) and phaC (poly-ß-hydroxybutyrate synthase) mutations on pyruvate metabolism in Rhizobium etli". Journal Of Bacteriology. 184(8):2296-2299. [doi:10.1128/JB.184.8.2296-2299.2002]11914362
2001Dunn, MF, Araiza, G and Finan, TM. (2001). "Cloning and characterization of the pyruvate carboxylase from Sinorhizobium meliloti Rm1021". Archives Of Microbiology. 176(5):355-363. [doi:10.1007/s002030100336]11702077
2000Castillo, A, Taboada, H, Mendoza, A, Valderrama, B, Encarnación, S and Mora, J. (2000). "Role of GOGAT in carbon and nitrogen partitioning in Rhizobium etli". MICROBIOLOGY-SGM. 146(7):1627-1637. [doi:10.1099/00221287-146-7-1627]10878127
1999Ramírez, M, Valderrama, B, Arredondo-Peter, R, Soberon, M, Mora, J and Hernández, G. (1999). "Rhizobium etli genetically engineered for the heterologous expression of Vitreoscilla sp. hemoglobin: Effects on free-living and symbiosis". Molecular Plant-Microbe Interactions. 12(11):1008-1015. [doi:10.1094/MPMI.1999.12.11.1008]
1998Mandon, K, Michel-Reydellet, N, Encarnación, S, Kaminski, PA, Leija, A, Cevallos, MA, Elmerich, C and Mora, J. (1998). "Poly-ß-hydroxybutyrate turnover in Azorhizobium caulinodans is required for growth and affects nifA expression". Journal Of Bacteriology. 180(19):5070-5076. 9748438
1998Encarnación, S, Calderon, J, Gelbard, AS, Cooper, AJL and Mora, J. (1998). "Glutamine biosynthesis and the utilization of succinate and glutamine by Rhizobium etli and Sinorhizobium meliloti". MICROBIOLOGY-SGM. 144(9):2629-2638. [doi:10.1099/00221287-144-9-2629]9782512
1998Dunn, MF. (1998). "Tricarboxylic acid cycle and anaplerotic enzymes in Rhizobia". Fems Microbiology Reviews. 22(2):105-123. [doi:10.1016/S0168-6445(98)00010-2]9729766
1998Mendoza, A, Valderrama, B, Leija, A and Mora, J. (1998). "nifA-dependent expression of glutamate dehydrogenase in Rhizobium etli modifies nitrogen partitioning during symbiosis". Molecular Plant-Microbe Interactions. 11(2):83-90. [doi:10.1094/MPMI.1998.11.2.83]9450332
1997MirandaRios, J, Morera, C, Taboada, H, Dávalos, A, Encarnación, S, Mora, J and Soberon, M. (1997). "Expression of thiamin biosynthetic genes (thiCOGE) and production of symbiotic terminal oxidase cbb(3), in Rhizobium etli". Journal Of Bacteriology. 179(22):6887-6893. [doi:10.1128/jb.179.22.6887-6893.1997]9371431
1996Dunn, MF, Encarnación, S, Araiza, G, Vargas, MC, Dávalos, A, Peralta, H, Mora, Y and Mora, J. (1996). "Pyruvate carboxylase from Rhizobium etli: Mutant characterization, nucleotide sequence, and physiological role". Journal Of Bacteriology. 178(20):5960-5970. [doi:10.1128/jb.178.20.5960-5970.1996]8830693
1996Valderrama, B, Dávalos, A, Girard, L, Morett, E and Mora, J. (1996). "Regulatory proteins and CIS-acting elements involved in the transcriptional control of Rhizobium etli reiterated nifH genes". Journal Of Bacteriology. 178(11):3119-3126. [doi:10.1128/jb.178.11.3119-3126.1996]8655489
1996Taboada, H, Encarnación, S, Vargas, MD, Mora, Y, Martínez-Romero, E and Mora, J. (1996). "Glutamine synthetase II constitutes a novel taxonomic marker in Rhizobium etli and other Rhizobium species". INTERNATIONAL JOURNAL OF SYSTEMATIC BACTERIOLOGY. 46(2):485-491. [doi:10.1099/00207713-46-2-485]
1996Cevallos, MA, Encarnación, S, Leija, A, Mora, Y and Mora, J. (1996). "Genetic and physiological characterization of a Rhizobium etli mutant strain unable to synthesize poly-ß-hydroxybutyrate". Journal Of Bacteriology. 178(6):1646-1654. [doi:10.1128/jb.178.6.1646-1654.1996]8626293
1995Mendoza Herrera, Alberto, Leija, A, Martínez-Romero, E, Hernández, G and Mora, J. (1995). "The enhancement of ammonium assimilation in Rhizobium etli prevents nodulation of Phaseolus vulgaris". Molecular Plant-Microbe Interactions. 8(4):584-592. [doi:10.1094/MPMI-8-0584]8589413
1995Encarnación, S, Dunn, MF, WILLMS, K and Mora, J. (1995). "Fermentative and aerobic metabolism in Rhizobium etli". Journal Of Bacteriology. 177(11):3058-3066. [doi:10.1128/jb.177.11.3058-3066.1995]7768801
1990Mora, J. (1990). "Glutamine metabolism and cycling in Neurospora crassa". MICROBIOLOGICAL REVIEWS. 54(3):293-304. 2145504
1989CALDERON, J and Mora, J. (1989). "Glutamine assimilation pathways in Neurospora crassa growing on glutamine as sole nitrogen and carbon source". Journal Of General Microbiology. 135(10):2699-2707. [doi:10.1099/00221287-135-10-2699]2576659
1989CALDERON, J, Cooper, A.J.L., Gelbard, A.S. and Mora, J. (1989). "13N isotope studies of glutamine assimilation pathways in Neurospora crassa.". Journal Of Bacteriology. 171(3):1772-1774. [doi:10.1128/jb.171.3.1772-1774.1989]2522094
1988BRAVO, A, BECERRIL, B and Mora, J. (1988). "INTRODUCTION OF THE ESCHERICHIA-COLI gdhA GENE INTO Rhizobium-phaseoli - EFFECT ON NITROGEN-FIXATION". Journal Of Bacteriology. 170(2):985-988. [doi:10.1128/jb.170.2.985-988.1988]2892830
1988BRAVO, A and Mora, J. (1988). "Ammonium assimilation in Rhizobium phaseoli by the glutamine synthetase-glutamate synthase pathway.". Journal Of Bacteriology. 170(2):980-984. [doi:10.1128/jb.170.2.980-984.1988]2892829
1987LOMNITZ, A, CALDERON, J, Hernández, G and Mora, J. (1987). "FUNCTIONAL-ANALYSIS OF AMMONIUM ASSIMILATION ENZYMES IN NEUROSPORA-CRASSA". Journal Of General Microbiology. 133(8):2333-2340.
1986Hernández, G and Mora, J. (1986). "Glutamine synthesis regulates sucrose catabolism in Neurospora crassa". Journal Of General Microbiology. 132(12):3315-3323.
1986Leija, A, Ruíz-Herrera, J. and Mora, J. (1986). "Effect of L-amino acids on Mucor rouxii dimorphism". Journal Of Bacteriology. 168(2):843-850. [doi:10.1128/jb.168.2.843-850.1986]3096961
1986Hernández, G, MORA, Y and Mora, J. (1986). "Regulation of glutamine synthesis by glycine and serine in Neurospora crassa". Journal Of Bacteriology. 165(1):133-138. [doi:10.1128/jb.165.1.133-138.1986]2867084
1985CALDERON, J, MORETT, E and Mora, J. (1985). "?-Amidase pathway in the degradation of glutamine in Neurospora crassa". Journal Of Bacteriology. 161(2):807-809. 2857167
1985CALDERON, J and Mora, J. (1985). "Glutamine cycling in Neurospora crassa". Journal Of General Microbiology. 131(12):3237-3242.
1983GONZALEZ, A, TENORIO, M, VACA, G and Mora, J. (1983). "Neurospora crassa mutant impaired in glutamine regulation". Journal Of Bacteriology. 155(1):1-7. 6134713
1983Hernández, G, Sánchez-Pescador, R., PALACIOS, R and Mora, J. (1983). "Nitrogen source regulates glutamate dehydrogenase NADP synthesis in Neurospora crassa". Journal Of Bacteriology. 154(1):524-528. 6300039
2011Higareda Almaraz, Juan Carlos, Enríquez Gasca, María del Rocío, Hérnandez, M, Resendis Antonio, Osbaldo and Encarnación, S. (2011). "Proteomic patterns of cervical cancer cell lines, a network perspective". Bmc Systems Biology. 5():96-96. [doi:10.1186/1752-0509-5-96]21696634
1987MORA, Y, Hernández, G and Mora, J. (1987). "Regulation of carbon and nitrogen flow by glutamate synthase in Neurospora crassa". Journal Of General Microbiology. 133(7):1667-1674. [doi:10.1099/00221287-133-7-1667]2959749
2014Garibay-Cerdenares, O.L., Hernández-Ramírez, V.I., Osorio-Trujillo, J.C., Hérnandez, M, Gallardo-Rincón, D., Cantú de León, D., Encarnación, S, Villegas-Pineda, J.C. and Talamas-Rohana, P.. (2014). "Proteomic identification of fucosylated haptoglobin alpha isoforms in ascitic fluids and its localization in ovarian carcinoma tissues from Mexican patients". Journal Of Ovarian Research. 7(1):27-27. [doi:10.1186/1757-2215-7-27]24576319
2013Rodríguez-Cruz, M., Coral-Vázquez, R.M., Hernández-Stengele, G., Sánchez, R., Salazar Bustamante, Emmanuel, Sánchez-Muñoz, F., Encarnación, S and Ramirez-Salcedo, J.. (2013). "Identification of Putative Ortholog Gene Blocks Involved in Gestant and Lactating Mammary Gland Development: A Rodent Cross- Species Microarray Transcriptomics Approach". INTERNATIONAL JOURNAL OF GENOMICS. 2013():624681-624681. [doi:10.1155/2013/624681]24288657
2012Sánchez, D.G., Otero, L.H., Hérnandez, M, Serra, A.L., Encarnación, S, Domenech, C.E. and Lisa, A.T.. (2012). "A pseudomonas Aeruginosa PA01 acetylcholinesterase is encoded by the PA4921 gene and belongs to the SGNH hydrolase family". Microbiological Research. 167(6):317-325. [doi:10.1016/j.micres.2011.11.005]22192836
2012Cancino-Rodezno, A., Lozano, L, Oppert, C., Castro, J.I., Lanz-Mendoza, H., Encarnación, S, Evans, A.E., Gill, S.S., Soberon, M., Jurat-Fuentes, J.L. and Bravo, A.. (2012). "Comparative proteomic analysis of Aedes Aegypti larval midgut after intoxication with Cry11Aa toxin from Bacillus thuringiensis". Plos One. 7(5):37034-. [doi:10.1371/journal.pone.0037034]22615881
2012Martínez-Gómez, K., Flores, N., Castañeda, H.M., Martínez-Batallar, AG, Hernández-Chávez, G., Ramírez, O.T., Gosset, G., Encarnación, S and Bolivar, F.. (2012). "New insights into Escherichia coli metabolism: carbon scavenging, acetate metabolism and carbon recycling responses during growth on glycerol". Microbial Cell Factories. 11():46-46. [doi:10.1186/1475-2859-11-46]22513097
2015Ingrid Gutierrez-Roman, Martha, Holguin-Melendez, Francisco, Dunn, MF, Guillen-Navarro, Karina and Huerta-Palacios, Graciela. (2015). "Antifungal activity of Serratia marcescens CFFSUR-B2 purified chitinolytic enzymes and prodigiosin against Mycosphaerella Fijiensis, causal agent of black Sigatoka in banana (Musa spp.)". Biocontrol. 60(4):565-572. [doi:10.1007/s10526-015-9655-6]
2012Ávila-Calderón, E.D., López-Merino, A.E., Jain, N., Peralta, H, López-Villegas, E.O., Sriranganathan, N., Boyle, S.M., Witonsky, S. and Contreras-RodrÍguez, A.. (2012). "Characterization of outer membrane vesicles from Brucella melitensis and protection induced in mice". CLINICAL & DEVELOPMENTAL IMMUNOLOGY. 2012():352493-352493. [doi:10.1155/2012/352493]22242036
2011Resendis Antonio, Osbaldo, Hérnandez, M, Salazar Bustamante, Emmanuel, Contreras-Martínez, S, Martínez-Batallar, AG, Pérez-Tejada Domínguez, Yolanda and Encarnación, S. (2011). "Systems biology of bacterial nitrogen fixation: High-throughput technology and its integrative description with constraint-based modeling". Bmc Systems Biology. 5():120-120. [doi:10.1186/1752-0509-5-120]21801415
2005Guillen-Navarro, K, Encarnación, S and Dunn, MF. (2005). "Biotin biosynthesis, transport and utilization in Rhizobia". Fems Microbiology Letters. 246(2):159-165. [doi:10.1016/j.femsle.2005.04.020]15899401
2010Meneses Moreno, Niurka, Mendonza-Hernández, G. and Encarnación, S. (2010). "The extracellular proteome of Rhizobium etli CE3 in exponential and stationary growth phase". Proteome Science. 8():51-51. [doi:10.1186/1477-5956-8-51]20942974
2017Vargas, MC, Mora, Yolanda, Díaz-Mendez, R, Martínez-Batallar, AG, Girard, L, Encarnación, S, Peralta, H and Mora, J. (2017). "Overproduction of Sinorhizobium meliloti argC (N-acetyl-gamma-glutamyl phosphate reductase) promotes growth delay and inefficient nodules". Fems Microbiology Letters. 364(23):fnx233-. [doi:10.1093/femsle/fnx233]29121239
1990CALDERON, J, MARTINEZ, LM and Mora, J. (1990). "Isolation and characterization of a Neurospora crassa mutant altered in the a polypeptide of glutamine synthetase". Journal Of Bacteriology. 172(9):4996-5000. [doi:10.1128/jb.172.9.4996-5000.1990]1975579
1982LARA, M, BLANCO, L, CAMPOMANES, M, CALVA, E, PALACIOS, R and Mora, J. (1982). "Physiology of ammonium assimilation in Neurospora crassa". Journal Of Bacteriology. 150(1):105-112. 6120927
1980Hummelt, Gisela and Mora, J. (1980). "Regulation and function of glutamate synthase in Neurospora crassa". BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS. 96(4):1688-1694. [doi:10.1016/0006-291X(80)91368-6]6449930
1997Dunn, MF, Araiza, G, Cevallos, MA and Mora, J. (1997). "Regulation of pyruvate carboxylase in Rhizobium etli". Fems Microbiology Letters. 157(2):301-306. [doi:10.1016/S0378-1097(97)00491-6]9435112
2018Taboada, H, Meneses N, Dunn, MF, Vargas, MC, Buchs N, Castro-Mondragón JA, Heller M and Encarnación, S. (2018). "Proteins in the periplasmic space and outer membrane vesicles of Rhizobium etli CE3 grown in minimal medium are largely distinct and change with growth phase.". MICROBIOLOGY-SGM. ():-. [doi:10.1099/mic.0.000720]30358529
2018Fernández-Coto, D.L., Gil, J., Hernández, A., Herrera-Goepfert, R., Castro-Romero, I., Hernández-Márquez, E., Arenas-Linares, A.S., Calderon-Sosa, V.T., Sanchez-Aleman, M.Á., Mendez-Tenorio, A., Encarnación, S and Ayala, G.. (2018). "Quantitative proteomics reveals proteins involved in the progression from non-cancerous lesions to gastric cancer". Journal Of Proteomics. 186():15-27. [doi:10.1016/j.jprot.2018.07.013]30048774
2018Aguilar, A, Mora Y, Dávalos, A, Girard, L, Mora, J and Peralta, H. (2018). "Analysis of genome sequence and symbiotic ability of rhizobial strains isolated from seeds of common bean (Phaseolus vulgaris).". Bmc Genomics. 19(1):645-645. [doi:10.1186/s12864-018-5023-0]30165827
2018Toledo-Leyva, Alfredo, Cesar Villegas-Pineda, Julio, Encarnación, S, Gallardo-Rincon, Dolores and Talamas-Rohana, Patricia. (2018). "Effect of ovarian cancer ascites on SKOV-3 cells proteome: new proteins associated with aggressive phenotype in epithelial ovarian cancer". Proteome Science. 16():3-3. [doi:10.1186/s12953-018-0133-9]29456457
2004Batista, C.V.F., Del Pozo, L., Zamudio, F.Z., Contreras-Martínez, S, Becerril, B., Wanke, E. and Possani, L.D.. (2004). "Proteomics of the venom from the Amazonian scorpion Tityus Cambridgei and the role of prolines on mass spectrometry analysis of toxins". JOURNAL OF CHROMATOGRAPHY B-ANALYTICAL TECHNOLOGIES IN THE BIOMEDICAL AND LIFE SCIENCES. 803(1):55-66. [doi:10.1016/j.jchromb.2003.09.002]15025998
2016Diener C, Muñoz-Gonzalez F, Encarnación, S and Resendis-Antonio O. (2016). "The space of enzyme regulation in HeLa cells can be inferred from its intracellular metabolome". SCIENTIFIC REPORTS. 6():28415-28415. [doi:10.1038/srep28415]27335086
2005Guillen-Navarro, K, Araiza, G, García-de los Santos, A, Mora, Y and Dunn, MF. (2005). "The Rhizobium etli bioMNY operon is involved in biotin transport". Fems Microbiology Letters. 250(2):209-219. [doi:10.1016/j.femsle.2005.07.020]16099603
2005Guerrero, G, Peralta, H, Aguilar, A, Díaz-Mendez, R, Villalobos, MA, Medrano-Soto, A and Mora, J. (2005). "Evolutionary, structural and functional relationships revealed by comparative analysis of syntenic genes in Rhizobiales". Bmc Evolutionary Biology. 5():55-55. [doi:10.1186/1471-2148-5-55]16229745
2016Aguilar, A, Peralta, H, Mora Y, Díaz-Mendez, R, Vargas, MC, Girard, L and Mora, J. (2016). "Genomic comparison of Agrobacterium Pusense strains isolated from bean nodules". Frontiers in Microbiology. 7(OCT):1720-1720. [doi:10.3389/fmicb.2016.01720]27833604
2009Laura Ramos-Vega, Ana, Davila-Martinez, Yadira, Sohlenkamp, C, Contreras-Martínez, S, Encarnación, S, Geiger, O and López-Lara, IM. (2009). "SMb20651 is another acyl carrier protein from Sinorhizobium meliloti". MICROBIOLOGY-SGM. 155(1):257-267. [doi:10.1099/mic.0.022079-0]19118366
2009Dunn, MF, Ramirez-Trujillo, J. A. and Hernandez-Lucas, I.. (2009). "Major roles of isocitrate lyase and malate synthase in bacterial and fungal pathogenesis". MICROBIOLOGY-SGM. 155(10):3166-3175. [doi:10.1099/mic.0.030858-0]19684068
2010Davila-Martinez, Yadira, Laura Ramos-Vega, Ana, Contreras-Martínez, S, Encarnación, S, Geiger, O and López-Lara, IM. (2010). "SMc01553 is the sixth acyl carrier protein in Sinorhizobium meliloti 1021". MICROBIOLOGY-SGM. 156(1):230-239. [doi:10.1099/mic.0.033480-0]19797355
2016Santillán O, Ramírez-Romero MA, Lozano, L, Checa A, Encarnación, S and Dávila G. (2016). "Region 4 of Rhizobium etli primary sigma factor (SigA) confers transcriptional laxity in Escherichia coli". Frontiers in Microbiology. 7(JUL):1078-1078. [doi:10.3389/fmicb.2016.01078]27468278
2010Resendis-Antonio, Osbaldo, Checa, Alberto and Encarnación, S. (2010). "Modeling Core Metabolism in Cancer Cells: Surveying the Topology Underlying the Warburg Effect". Plos One. 5(8):e12383-. [doi:10.1371/journal.pone.0012383]20811631
1970Rosas-Pérez, T and Dunn, MF. (1970). "The Symbiome of Llaveia Cochineals (Hemiptera: Coccoidea: Monophlebidae) Includes a Gammaproteobacterial Cosymbiont Sodalis TME1 and the Known Candidatus Walczuchella monophlebidarum". Insect Physiology and Ecology. ():115-134. [doi:10.5772/66442]