Alejandra Cristina López Fuentes

Computational Genomics Support staff

Other

Academic history

Links

Scopus

Telephone: (777) 3132063
Email: aclopez@ccg.unam.mx

Publications

YearPublicationPMID
2016Gama-Castro, S, Salgado, H, Santos-Zavaleta, A, Ledezma-Tejeida, D., Muñíz-Rascado, L, García-Sotelo, J.S., Alquicira-Hernández, K, Martínez-Flores, I, Pannier, L., Castro-Mondragón, J.A., Medina-Rivera, A., Solano-Lira, H., Bonavides-Martínez, C, Pérez-Rueda, E., Alquicira-Hernández, S, Porrón-Sotelo, L., López-Fuentes, A, Hernández-Koutoucheva, A., Del Moral-Chávez, V, Rinaldi, F. and Collado-Vides, J. (2016). "RegulonDB version 9.0: High-level integration of gene regulation, coexpression, motif clustering and beyond". Nucleic Acids Research. 44(D1):133-143. [doi:10.1093/nar/gkv1156]26527724
2014Gama-Castro, S, Rinaldi, F., López-Fuentes, A, Balderas MartÍnez, Yalbi Itzel, Clematide, S., Ellendorff, T.R., Santos-Zavaleta, A, Marques-Madeira, H. and Collado-Vides, J. (2014). "Assisted curation of regulatory interactions and growth conditions of OxyR in E. Colik-12". DATABASE-THE JOURNAL OF BIOLOGICAL DATABASES AND CURATION. 2014():bau049-. [doi:10.1093/database/bau049]24903516
2013Salgado, H, Peralta Gil, Martín, Gama-Castro, S, Santos-Zavaleta, A, Muñíz-Rascado, L, Garcia Sotelo, Jair Santiago, Weiss, V., Solano Lira, Hilda, Martínez-Flores, I, Medina Rivera, Alejandra Eugenia, Salgado Osorio, Gerardo, Alquicira-Hernández, S, Alquicira-Hernández, K, López-Fuentes, A, Porrón Sotelo, Liliana, Huerta Moreno, Araceli, Bonavides-Martínez, C, Balderas MartÍnez, Yalbi Itzel, Pannier, Lucia, Olvera, M., Labastida, A., Jiménez-Jacinto, V., Vega-Alvarado, L., Del Moral-Chávez, V, Hérnandez-Álvarez, A, Morett, E. and Collado-Vides, J. (2013). "RegulonDB v8.0: Omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more". Nucleic Acids Research. 41(D1):203-213. [doi:10.1093/nar/gks1201]23203884
2011Gama-Castro, S, Salgado, H, Peralta Gil, Martín, Santos-Zavaleta, A, Muñíz-Rascado, L, Solano Lira, Hilda, Jimenez-Jacinto, V., Weiss, V., Garcia Sotelo, Jair Santiago, López-Fuentes, A, Porrón Sotelo, Liliana, Alquicira-Hernández, S, Medina Rivera, Alejandra Eugenia, Martínez-Flores, I, Alquicira-Hernández, K, Martínez Adame, Ruth, Bonavides-Martínez, C, Miranda-Ríos, J., Huerta Moreno, Araceli, Mendoza-Vargas, A., Collado Torres, Leonardo, Taboada, B., Vega-Alvarado, L., Olvera, M., Olvera, L., Grande, R., Morett, E. and Collado-Vides, J. (2011). "RegulonDB version 7.0: Transcriptional regulation of Escherichia coli K-12 integrated within genetic sensory response units (Gensor Units)". Nucleic Acids Research. 39(SUPPL. 1):98-105. [doi:10.1093/nar/gkq1110]21051347
2011Salgado, H, Martínez-Flores, I, López-Fuentes, A, Garcia Sotelo, Jair Santiago, Porrón Sotelo, Liliana, Muñíz-Rascado, L and Collado-Vides, J. (2011). "Extracting regulatory networks of/Escherichia coli/from RegulonDB". Bacterial Molecular Networks: Methods and Protocols. ():-.
2010Salgado, H, López-Fuentes, A, Martínez-Flores, I, Garcia Sotelo, Jair Santiago, Porrón Sotelo, Liliana, Solano Lira, Hilda, Muñíz-Rascado, L and Collado-Vides, J. (2010). "Extracting regulatory networks of Escherichia coli from RegulonDB". Bacterial Molecular Networks: Methods and Protocols. ():-.
2010Martínez-Flores, I, Jiménez-Jacinto, V., López-Fuentes, A and Collado-Vides, J. (2010). "Expanding BioPAX format by integrating Gene Regulation". EMBnet.journal. 16():39-43.
2017Rinaldi F, Lithgow O, Gama-Castro, S, Solano H, López-Fuentes, A, Muñíz-Rascado, L, Ishida-Gutiérrez C, Méndez-Cruz, CF and Collado-Vides, J. (2017). "Strategies towards digital and semi-automated curation in RegulonDB". DATABASE-THE JOURNAL OF BIOLOGICAL DATABASES AND CURATION. 2017(1):bax012-. [doi:10.1093/database/bax012]28365731
2013Moreno, A., Isern, D. and López-Fuentes, A. (2013). "Ontology-based information extraction of regulatory networks from scientific articles with case studies for Escherichia coli". EXPERT SYSTEMS WITH APPLICATIONS. 40(8):3266-3281. [doi:10.1016/j.eswa.2012.12.090]
2012Salgado, H, Martínez-Flores, I, López-Fuentes, A, Garcia Sotelo, Jair Santiago, Porrón Sotelo, Liliana, Muñíz-Rascado, L and Collado-Vides, J. (2012). "Extracting regulatory networks of Escherichia coli from RegulonDB". Methods in Molecular Biology. 804():179-195. [doi:10.1007/978-1-61779-361-5_10]22144154