Alberto Santos Zavaleta

Computational Genomics Support staff

UNAM

Academic history

Links

Scopus

Telephone: (777) 3132063
Email: asantos@ccg.unam.mx

Publications

YearPublicationPMID
2017Keseler IM, Mackie A, Santos-Zavaleta A, Billington R, Bonavides-Martínez C, Caspi R, Fulcher C, Gama-Castro S, Kothari A, Krummenacker M, Latendresse M, Muñiz-Rascado L, Ong Q, Paley S, Peralta-Gil M, Subhraveti P, Velázquez-Ramírez DA, Weaver D, Collado-Vides J, Paulsen I, Karp PD (2017) The EcoCyc database: reflecting new knowledge about Escherichia coli K-12 Nucleic Acids Research 45(D1):543-550 [doi:10.1093/nar/gkw1003]27899573
2016Gama-Castro, S., Salgado, H., Santos-Zavaleta, A., Ledezma-Tejeida, D., Muñiz-Rascado, L., García-Sotelo, J.S., Alquicira-Hernández, K., Martínez-Flores, I., Pannier, L., Castro-Mondragón, J.A., Medina-Rivera, A., Solano-Lira, H., Bonavides-Martínez, C., Pérez-Rueda, E., Alquicira-Hernández, S., Porrón-Sotelo, L., López-Fuentes, A., Hernández-Koutoucheva, A., Del Moral-Chavez, V., Rinaldi, F., Collado-Vides, J. (2016) RegulonDB version 9.0: High-level integration of gene regulation, coexpression, motif clustering and beyond Nucleic Acids Research 44(D1):133-143 [doi:10.1093/nar/gkv1156]26527724
2014Gama Castro, MA. DEL SOCORRO, Rinaldi, F., López Fuentes, Alejandra Cristina, Balderas MartÍnez, Yalbi Itzel, Clematide, S., Ellendorff, T.R., Santos Zavaleta, Alberto, Marques-Madeira, H., Collado Vides, Pedro Julio (2014) Assisted curation of regulatory interactions and growth conditions of OxyR in E. coli K-12 DATABASE-THE JOURNAL OF BIOLOGICAL DATABASES AND CURATION 2014():bau049- [doi:10.1093/database/bau049]24903516
2013Salgado Osorio, Heladia, Peralta Gil, Martín, Gama Castro, MA. DEL SOCORRO, Santos Zavaleta, Alberto, Muñíz Rascado, Luis José, Garcia Sotelo, Jair Santiago, Weiss, V., Solano Lira, Hilda, Martínez Flores, Irma, Medina Rivera, Alejandra Eugenia, Salgado Osorio, Gerardo, Alquicira Hernández, Shirley, Alquicira Hernández, Kevin, López Fuentes, Alejandra Cristina, Porrón Sotelo, Liliana, Huerta Moreno, Araceli, Bonavides Martínez, César Augusto, Balderas MartÍnez, Yalbi Itzel, Pannier, Lucia, Olvera, M., Labastida, A., Jiménez-Jacinto, V., Vega-Alvarado, L., del Moral Chávez, Victor Manuel, Hernández Álvarez, Alfredo José, Morett, E., Collado Vides, Pedro Julio (2013) RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more Nucleic Acids Research 41(D1):203-213 [doi:10.1093/nar/gks1201]23203884
2013Keseler, I.M., Mackie, A., Peralta Gil, Martín, Santos Zavaleta, Alberto, Gama Castro, MA. DEL SOCORRO, Bonavides Martínez, César Augusto, Fulcher, C., Huerta Moreno, Araceli, Kothari, A., Krummenacker, M., Latendresse, M., Muñíz Rascado, Luis José, Ong, Q., Paley, S., Schroder, I., Shearer, A.G., Subhraveti, P., Travers, M., Weerasinghe, D., Weiss, V., Collado Vides, Pedro Julio, Gunsalus, R.P., Paulsen, I., Karp, P.D. (2013) EcoCyc: fusing model organism databases with systems biology Nucleic Acids Research 41(D1):605-612 [doi:10.1093/nar/gks1027]23143106
2011Santos Zavaleta, Alberto, Gama Castro, MA. DEL SOCORRO, Pérez Rueda, Ernesto (2011) A comparative genome analysis of the RpoS sigmulon shows a high diversity of responses and origins MICROBIOLOGY-SGM 157(5):1393-1401 [doi:10.1099/mic.0.042937-0]21310789
2011Keseler, I.M., Collado Vides, Pedro Julio, Santos Zavaleta, Alberto, Peralta Gil, Martín, Gama Castro, MA. DEL SOCORRO, Muñíz Rascado, Luis José, Bonavides Martínez, César Augusto, Paley, S., Krummenacker, M., Altman, T., Spaulding, A., Spaulding, A., Pacheco, J., Latendresse, M., Fulcher, C., Sarker, M., Shearer, A.G., Mackie, A., Paulsen, I., Gunsalus, R.P., Karp, P.D. (2011) EcoCyc: a comprehensive database of Escherichia coli biology Nucleic Acids Research 39(1):583-590 [doi:10.1093/nar/gkq1143]21097882
2011Gama Castro, MA. DEL SOCORRO, Salgado Osorio, Heladia, Peralta Gil, Martín, Santos Zavaleta, Alberto, Muñíz Rascado, Luis José, Solano Lira, Hilda, Jimenez-Jacinto, V., Weiss, V., Garcia Sotelo, Jair Santiago, López Fuentes, Alejandra Cristina, Porrón Sotelo, Liliana, Alquicira Hernández, Shirley, Medina Rivera, Alejandra Eugenia, Martínez Flores, Irma, Alquicira Hernández, Kevin, Martínez Adame, Ruth, Bonavides Martínez, César Augusto, Miranda-Ríos, J., Huerta Moreno, Araceli, Mendoza-Vargas, A., Collado Torres, Leonardo, Taboada, B., Vega-Alvarado, L., Olvera, M., Olvera, L., Grande, R., Morett, E., Collado Vides, Pedro Julio (2011) RegulonDB version 7.0: transcriptional regulation of Escherichia coli K-12 integrated within genetic sensory response units (Gensor Units) Nucleic Acids Research 39(1):98-105 [doi:10.1093/nar/gkq1110]21051347
2009Keseler, Ingrid M., Bonavides-Martinez, Cesar, Collado-Vides, Julio, Gama-Castro, Socorro, Gunsalus, Robert P., Johnson, D. Aaron, Krummenacker, Markus, Nolan, Laura M., Paley, Suzanne, Paulsen, Ian T., Peralta-Gil, Martin, Santos-Zavaleta, Alberto, Glennon Shearer, Alexander, Karp, Peter D. (2009) EcoCyc: A comprehensive view of Escherichia coli biology Nucleic Acids Research 37(SUPPL. 1):464-470 [doi:10.1093/nar/gkn751]18974181
2009Collado-Vides, Julio, Salgado, Heladia, Morett, Enrique, Gama-Castro, Socorro, Jimenez-Jacinto, Veronica, Martinez-Flores, Irma, Medina-Rivera, Alejandra, Muniz-Rascado, Luis, Peralta-Gil, Martin, Santos-Zavaleta, Alberto (2009) Bioinformatics Resources for the Study of Gene Regulation in Bacteria Journal Of Bacteriology 191(1):23-31 [doi:10.1128/JB.01017-08]18978060
2008Gama Castro, MA. DEL SOCORRO, Jiménez Jacinto, Verónica, Peralta Gil, Martín, Santos Zavaleta, Alberto, Peñaloza Spinola, Mónica Ivonne, Contreras Moreira, Bruno, Segura Salazar, Juan, Muñíz Rascado, Luis José, Martínez Flores, Irma, Salgado Osorio, Heladia, Bonavides Martínez, César Augusto, Abreu Goodger, Cei Leander Gastón, Rodríguez Penagos, Carlos, Miranda-Ríos, J., Morett Sánchez, Juan Enrique, Merino, E., Huerta Moreno, Araceli, Treviño Quintanilla, Luis Gerardo, Collado Vides, Pedro Julio (2008) RegulonDB (version 6.0): gene regulation model of Escherichia coli K-12 beyond transcription, active (experimental) annotated promoters and Textpresso navigation Nucleic Acids Research 36(SI):120-124 [doi:10.1093/nar/gkm994]18158297
2007Karp, P.D., Keseler, I.M., Shearer, A., Latendresse, M., Krummenacker, M., Paley, S.M., Paulsen, I., Collado Vides, Pedro Julio, Gama Castro, MA. DEL SOCORRO, Peralta Gil, Martín, Santos Zavaleta, Alberto, Peñaloza Spinola, Mónica Ivonne, Bonavides Martínez, César Augusto, Ingraham, J. (2007) Multidimensional annotation of the Escherichia coli K-12 genome Nucleic Acids Research 35(22):7577-7590 [doi:10.1093/nar/gkm740]17940092
2006Salgado Osorio, Heladia, Santos Zavaleta, Alberto, Gama Castro, MA. DEL SOCORRO, Peralta Gil, Martín, Peñaloza Spinola, Mónica Ivonne, Martínez Antonio, Agustino, Karp, P.D., Collado Vides, Pedro Julio (2006) The comprehensive updated regulatory network of Escherichia coli K-12 Bmc Bioinformatics 7():5-5 [doi:10.1186/1471-2105-7-5]16398937
2006Salgado Osorio, Heladia, Gama Castro, MA. DEL SOCORRO, Peralta Gil, Martín, Díaz Peredo, Edgar Ulises, Sánchez Solano, Erika Fabiola, Santos Zavaleta, Alberto, Martínez Flores, Irma, Jiménez Jacinto, Verónica, Bonavides Martínez, César Augusto, Segura Salazar, Juan, Martínez Antonio, Agustino, Collado Vides, Pedro Julio (2006) RegulonDB (version 5.0): Escherichia coli K-12 transcriptional regulatory network, operon organization, and growth conditions Nucleic Acids Research 34(SI):394-397 [doi:10.1093/nar/gkj156]16381895
2004Salgado Osorio, Heladia, Gama Castro, MA. DEL SOCORRO, Martínez Antonio, Agustino, Díaz Peredo, Edgar Ulises, Sánchez Solano, Erika Fabiola, Peralta Gil, Martín, García Alonso, Delfino, Jiménez Jacinto, Verónica, Santos Zavaleta, Alberto, Bonavides Martínez, César Augusto, Collado Vides, Pedro Julio (2004) RegulonDB (version 4.0): transcriptional regulation, operon organization and growth conditions in Escherichia coli K-12 Nucleic Acids Research 32(SI):303-306 [doi:10.1093/nar/gkh140]14681419
2001Hershberg, R., Bejerano, G., Santos-Zavaleta, A, Margalit, H. (2001) PromEC: An updated database of Escherichia coli mRNA promoters with experimentally identified transcriptional start sites Nucleic Acids Research 29(1):277-277 [doi:10.1093/nar/29.1.277]11125111
2001Salgado, H, Santos-Zavaleta, A, Gama-Castro, S, Millen-Zarate, D, Diaz-Peredo, E, Sanchez-Solano, F, Pérez-Rueda, E, Bonavides-Martinez, C, Collado-Vides, J (2001) RegulonDB (version 3.2): transcriptional regulation and operon organization in Escherichia coli K-12 Nucleic Acids Research 29(1):72-74 [doi:10.1093/nar/29.1.72]11125053
2000Salgado, H, Santos-Zavaleta, A, Gama-Castro, S, Millan-Zarate, D, Blattner, FR, Collado-Vides, J (2000) RegulonDB (version 3.0): transcriptional regulation and operon organization in Escherichia coli K-12 Nucleic Acids Research 28(1):65-67 [doi:10.1093/nar/28.1.65]10592182
2013Weiss, V., Medina-Rivera, A, Huerta, AM, Santos-Zavaleta, A, Salgado, H, Morett, E., Collado-Vides, J (2013) Evidence classification of high-throughput protocols and confidence integration in RegulonDB DATABASE-THE JOURNAL OF BIOLOGICAL DATABASES AND CURATION 2013():bas059- [doi:10.1093/database/bas059]23327937