Recent Publications (12 months)
Publications
| # | Year | Title | Links |
| 1 | 2017 | Alatorre-Fernández, P., Mayoral-Terán, C., Velázquez-Acosta, C., Franco-Rodriguez, C., Flores-Moreno, K., Cevallos, M.A., López-Vidal, Y. and Volkow-Fernandez, P. (2017). "A Polyclonal Outbreak Of Bloodstream Infections by Enterococcus faecium in Patients with Hematologic Malignancies". American Journal of Infection Control. 45(3):260-266 | PUBMED: #27852447 |
| 2 | 2017 | Balderas-Martinez, Y.I., Rinaldi, F., Contreras, G., Solano-Lira, H., Sánchez-Pérez, M., Collado-Vides, J., Selman, M. and Pardo, A. (2017). "Improving Biocuration Of microRNAs in Diseases: a Case Study in Idiopathic Pulmonary Fibrosis". Database-the Journal of Biological Databases and Curation. | PUBMED: #28605770 |
| 3 | 2017 | Bañuelos-Vazquez, L.A., Tejerizo, G.T. and Brom, S. (2017). "Regulation of Conjugative Transfer of Plasmids and Integrative Conjugative Elements". Plasmid. 91:82-89 | PUBMED: #28438469 |
| 4 | 2017 | Beardmore, R.E., Peña-Miller, R., Gori, F. and Iredell, J. (2017). "Antibiotic Cycling and Antibiotic Mixing: Which One Best Mitigates Antibiotic Resistance?". Mol Biol Evol. 34(4):802-817 | PUBMED: #28096304 |
| 5 | 2017 | Bustos, P., Santamaria, R.I., Pérez-Carrascal, O.M., Acosta, J.L., Lozano, L., Juárez, S., Martínez-Flores, I., Martínez-Romero, E., Romero, D., Dávila, G., Vinuesa, P., Miranda-Sánchez, F., Ormeño-Orrillo, E. and González, V. (2017). "Complete Genome Sequences Of Three Rhizobium gallicum Symbionts Associated With Common Bean (Phaseolus vulgaris)". Genome Announc. 5(11) | PUBMED: #28302777 |
| 6 | 2017 | Contreras-Moreira, B., Cantalapiedra, C.P., García-Pereira, M.J., Gordon, S.P., Vogel, J.P., Igartua, E., Casas, A.M. and Vinuesa, P. (2017). "Analysis of Plant Pan-genomes and Transcriptomes with GET_HOMOLOGUES-est, a Clustering Solution for Sequences of the Same Species". Front Plant Sci. 8:184 | PUBMED: #28261241 |
| 7 | 2017 | Cruz-Córdova, A., Rodea, G.E., Porta, H., Navarro-Ocaña, A., Eslava-Campos, C., Cevallos, M.A. and Xicohtencatl-Cortes, J. (2017). "Genome Sequence Of Enterotoxigenic Escherichia coli Strain FMU073332". Genome Announc. 5(8):e01600-16 | PUBMED: #28232434 |
| 8 | 2017 | Cubillas, C., Miranda-Sánchez, F., Elizalde, J.P., Vinuesa, P., Brom, S. and García-de los Santos, A. (2017). "A Comprehensive Phylogenetic Analysis of Copper Transporting P1b ATPases from Bacteria of the Rhizobiales Order Uncovers Multiplicity, Diversity and Novel Taxonomic Subtypes". Microbiologyopen. | PUBMED: #28217917 |
| 9 | 2017 | Cubillas, C., Miranda-Sánchez, F., González-Sánchez, A., Elizalde, J.P., Vinuesa, P., Brom, S. and (2017). "A Comprehensive Phylogenetic Analysis of Copper Transporting P-1b ATPases from Bacteria of the Rhizobiales Order Uncovers Multiplicity, Diversity and Novel Taxonomic Subtypes". Microbiologyopen. 6(4):-e452 | PUBMED: #28217917 |
| 10 | 2017 | de Lajudie, P. and Martínez-Romero, E. (2017). "International Committee on Systematics of Prokaryotes Subcommittee on the Taxonomy of Agrobacterium and Rhizobium Minutes of the Meeting". Int J Syst Evol Microbiol. 67(2):516-520 | |
| 11 | 2017 | Esposti, M.D. (2017). "The Long Story of Mitochondrial DNA and Respiratory Complex I". Frontiers in Bioscience-landmark. 22:722-731 | PUBMED: #27814642 |
| 12 | 2017 | Esposti, M.D. and Martínez-Romero, E. (2017). "The Functional Microbiome of Arthropods". Plos One. 12(5) | PUBMED: #28475624 |
| 13 | 2017 | Fang, H., Wu, Y.Y., Yang, H., Yoon, M., Jiménez-Barrón, L.T., Mittelman, D., Robison, R., Wang, K. and Lyon, G.J. (2017). "Whole Genome Sequencing of One Complex Pedigree Illustrates Challenges with Genomic Medicine". Bmc Medical Genomics. 10:10 | PUBMED: #28228131 |
| 14 | 2017 | Freyre-González, J.A. and Tauch, A. (2017). "Functional Architecture And Global Properties Of the Corynebacterium glutamicum Regulatory Network: Novel Insights from a Dataset with a High Genomic Coverage". Journal of Biotechnology. 257:199-210 | PUBMED: #27829123 |
| 15 | 2017 | Gamez-Reyes, A., Becerra-Lobato, N., Ramírez-Trujillo, J.A., Martínez-Romero, E., Dunn, M.F. and Hernández-Lucas, I (2017). "The Rhizobium Leucaenae Cfn 299 pSym Plasmid Contains Genes Expressed in Free Life and Symbiosis, as well as Two Replication Systems". Annals of Microbiology. 67(3):263-273 | |
| 16 | 2017 | García-Gómez, E., Jaso-Vera, M.E., Juárez-Verdayes, M.A., Alcántar-Curiel, M.D., Betanzos-Cabrera, G., Peralta, H., Rodríguez-Martínez, S., Cancino-Díaz, M.E., Jan-Roblero, J. and Cancino-Díaz, J.C. (2017). "The 95 Delta G Mutation in the 5untranslated Region of the Nora Gene Increases Efflux Activity in Staphylococcus Epidermidis Isolates". Microbial Pathogenesis. 103:139-148 | PUBMED: #28017900 |
| 17 | 2017 | Gil Valdes, J., Ramírez-Torres, A. and Encarnación, S. (2017). "Lysine Acetylation and Cancer: a Proteomics Perspective". Journal of Proteomics. 150:297-309 | PUBMED: #27746255 |
| 18 | 2017 | Hernández-Vargas, M.J., Gil Valdes, J., Lozano, L., Pedraza-Escalona, M., Ortíz, E., Encarnación, S., Alagon, A. and Corzo, G. (2017). "Proteomic And Transcriptomic Analysis Of Saliva Components from the Hematophagous Reduviid Triatoma Pallidipennis". Journal of Proteomics. 162:30-39 | PUBMED: #28442446 |
| 19 | 2017 | Iñiguez-Rabago, L.P. and Hernández, G. (2017). "The Evolutionary Relationship between Alternative Splicing and Gene Duplication". Frontiers in Genetics. 8 | |
| 20 | 2017 | Keseler, I.M., Mackie, A., Santos-Zavaleta, A., Billington, R., Bonavides-Martínez, C., Caspi, R., Fulcher, C., Gama-Castro, S., Kothari, A., Krummenacker, M., Latendresse, M., Muñíz-Rascado, L., Ong, Q., Paley, S., Peralta-Gil, M., Subhraveti, P., Velázquez-Ramírez, D.A., Weaver, D., Collado-Vides, J., Paulsen, I. and Karp, P.D. (2017). "The EcoCyc Database: Reflecting New Knowledge About Escherichia coli K-12". Nucl Acid Res. 45(D1):D543-D550 | PUBMED: #27899573 |
| 21 | 2017 | Ledezma-Tejeida, D., Ishida, C. and Collado-Vides, J. (2017). "Genome-wide Mapping Of Transcriptional Regulation and Metabolism Describes Information-processing Units in Escherichia coli". Frontiers in Microbiology. 8 | PUBMED: #28824593 |
| 22 | 2017 | Martinez-Flores, W.A., Palma-Garcia, J.M., Caballero-Ortega, H., Del Viento-Camacho, A., López-Escamilla, E., Martínez-Hernández, F., Vinuesa, P., Correa, D. and Maravilla, P. (2017). "Genotyping Toxoplasma Gondii with the B1 Gene in Naturally Infected Sheep from an Endemic Region in the Pacific Coast of Mexico". Vector-borne and Zoonotic Diseases. 17(7):495-502 | PUBMED: #28530509 |
| 23 | 2017 | Meneses, N., Taboada, H., Dunn, M.F., Vargas, M.C., Buchs, N., Heller, M. and Encarnación, S. (2017). "The Naringenin-induced Exoproteome of Rhizobium etli CE3". Arch Microbiol. 1-19 | PUBMED: #28255691 |
| 24 | 2017 | Montes-Grajales, D., Fennix-Agudelo, M. and Miranda-Castro, W. (2017). "Occurrence of Personal Care Products as Emerging Chemicals of Concern in Water Resources: a Review". Science of the Total Environment. 595:601-614 | PUBMED: #28399499 |
| 25 | 2017 | Ochoa-Sanchez, L.E. and Vinuesa, P. (2017). "Evolutionary Genetic Analysis Uncovers Multiple Species With Distinct Habitat Preferences and Antibiotic Resistance Phenotypes in the Stenotrophomonas maltophilia Complex". Frontiers in Microbiology. 8:-1548 | PUBMED: #28861062 |
| 26 | 2017 | Osorio, A., Camarena, L., Cevallos, M.A. and Poggio, S. (2017). "A New Essential Cell Division Protein in Caulobacter Crescentus". J Bacteriol. 199(8) | PUBMED: #28167520 |
| 27 | 2017 | Pannier, L., Merino, E., Marchal. K. and Collado-Vides, J. (2017). "Effect of Genomic Distance on Coexpression of Coregulated Genes in e. coli". Plos One. 12(4) | PUBMED: #28419102 |
| 28 | 2017 | Pérez-Morales, D., Banda, M.M., Chau, N.Y.E., Salgado, H., Martínez-Flores, I., Ibarra, J.A., Ilyas, B., Coombes, B.K. and Bustamante, V.H. (2017). "The Transcriptional Regulator Ssrb is Involved in a Molecular Switch Controlling Virulence Lifestyles of Salmonella". Plos Pathogens. 13(7):-e1006497 | PUBMED: #28704543 |
| 29 | 2017 | Rinaldi, F., Lithgow, O., Gama-Castro, S., Solano-Lira, H., López-Fuentes, A., Muñíz-Rascado, L., Ishida, C., Méndez-Cruz, C.F. and Collado-Vides, J. (2017). "Strategies towards Digital And Semi-automated Curation In RegulonDB". Database-the Journal of Biological Databases and Curation. | PUBMED: #28365731 |
| 30 | 2017 | Santillán, O., Ramírez-Romero, M.Á. and Dávila, G. (2017). "CAPRRESI: Chimera Assembly By Plasmid Recovery and Restriction Enzyme Site Insertion". Jove-journal of Visualized Experiments. (124)-e55526 | PUBMED: #28671650 |
| 31 | 2017 | Torres-Tejerizo, G., Wibberg, D., Winkler, A., Ormeño-Orrillo, E., Martínez-Romero, E., Niehaus, K., Puhler, A., Kalinowski, J., Lagares, A., Schlüter, A. and Pistorio, M. (2017). "Genome Sequence Of The Symbiotic Type Strain Rhizobium tibeticum CCBAU85039T". Genome Announc. 5(4):e01513-e01516 | PUBMED: #28126941 |
| 32 | 2017 | Vences-Guzmán, M.Á., Goetting-Minesky, M.P., Guan, Z.Q., Castillo-Ramírez, S., Cordoba-Castro, L.A., López-Lara, I.M., Geiger, O., Sohlenkamp, C. and Fenno, J.C. (2017). "1,2-Diacylglycerol Choline Phosphotransferase Catalyzes the Final Step In the Unique Treponema denticola Phosphatidylcholine Biosynthesis Pathway". Mol Microbiol. 103(5):896-912 | PUBMED: #28009086 |
| 33 | 2017 | Vicens, A., Andrade-López, K., Cortéz, D., Gutiérrez, R.M. and Treviño, L.G. (2017). "Premammalian Origin Of the Sperm-Specific Slo3 Channel". FEBS Open BIO. 3:382-390 | PUBMED: #28286733 |
| 34 | 2017 | Wu, Z.Q., Sloan, D.B., Brown, C.W., Rosenblueth, M., Palmer, J.D. and Ong, H.C. (2017). "Mitochondrial Retroprocessing Promoted Functional Transfers of rpl5 to the Nucleus in Grasses". Mol Biol Evol. 34(9):2340-2354 | PUBMED: #28541477 |
| 35 | 2016 | Alfonso-Gordillo, G., Cristiani-Urbina, E., Flores-Ortiz, C.M., Peralta, H., Cancino-Díaz, J.C., Cruz-Maya, J.A. and Jan-Roblero, J. (2016). "Stenotrophomonas maltophilia Isolated From Gasoline-contaminated Soil is Capable of Degrading Methyl Tert-butyl Ether". Electronic Journal of Biotechnology. 23(12):20 | |
| 36 | 2016 | Alvarado-Delgado, A., OrtÍz, G.P., Tello-LÓpez, A.T., Encarnación, S., Conde, R., Martínez-Batallar, Á.G., Moran-Francia, K. and Lanz-Mendoza, H. (2016). "Infection With Plasmodium Berghei Ookinetes Alters Protein Expression In The Brain of Anopheles albimanus Mosquitoes". Parasites and Vectors. 9 | PUBMED: #27724938 |
| 37 | 2016 | Becker, N.S., Margos, G., Blum, H., Krebs, S., Graf, A., Lane, R.S., Castillo-Ramírez, S., Sing, A. and Fingerle, V. (2016). "Recurrent Evolution of Host And Vector Association In Bacteria of the Borrelia burgdorferi sensu lato Species Complex". BMC Genomics. 17 | PUBMED: #27632983 |
| 38 | 2016 | Jiménez-Cortes, J.G., Canales-Lazcano, J., Lara-Reyes, N., Rosenblueth, M., Martínez-Romero, E. and Contreras-Garduno, J. (2016). "Microbiota From Rhabditis Regina may Alter Nematode Entomopathogenicity". Parasitology Research. 115(11):4153-4165 | PUBMED: #27492201 |
| 39 | 2016 | Joseph, S.J., Cox, D., Wolff, B., Morrison, S.S., Kozak-Muiznieks, N.A., Frace, M., Didelot, X., Castillo-Ramírez, S., Winchell, J., Read, T.D. and Dean, D. (2016). "Dynamics of Genome Change Among Legionella Species". Sci Rep. 6 | PUBMED: #27633769 |
| 40 | 2016 | Martínez-Flores, I., Pérez-Morales, D., Sánchez-Pérez, M., Paredes, C.C., Collado-Vides, J., Salgado, H. and Bustamante, V.H. (2016). "In Silico Clustering Of Salmonella Global Gene Expression Data Reveals Novel Genes Co-regulated With the SPI-1 Virulence Genes through Hild". Sci Rep. 6 | PUBMED: #27886269 |
| 41 | 2016 | Méndez-Cruz, C.F., Medina-Urrea, A. and Sierra, G. (2016). "Unsupervised Morphological Segmentation Based on Affixality Measurements". Pattern Recognitian Letters. 84:127-133 | PUBMED: #26698293 |
| 42 | 2016 | Peralta, H., Aguilar, A., Díaz-Mendez, R., Mora, Y., Martínez-Batallar, Á.G., Salazar, E., Vargas, M.C., Martínez-Romero, E., Encarnación, S., Girard, L. and Mora, J. (2016). "Genomic Studies Of Nitrogen-fixing Rhizobial Strains from Phaseolus vulgaris Seeds and Nodules". BMC Genomics. 17 | PUBMED: #27601031 |
| 43 | 2016 | Ramirez, M., Iñiguez-Rabago, L.P., Guerrero, G., Sparvoli, F. and Hernández, G. (2016). "Rhizobium etli Bacteroids Engineered For Vitreoscilla Hemoglobin Expression Alleviate Oxidative Stress In Common Bean Nodules that Reprogramme Global Gene Expression". Plant Biotechnology Reports. 10(6):463-474 | |
| 44 | 2016 | Ramírez-Puebla, T., Ormeño-Orrillo, E., Vera-Ponce de León, A., Lozano, L., Sánchez-Flores, A., Rosenblueth, M. and Martínez-Romero, E. (2016). "Genomes Of Candidatus Wolbachia Bourtzisii Wdaca And Candidatus Wolbachia pipientis Wdacb From The Cochineal Insect Dactylopius Coccus (Hemiptera: DACTYLOPIIDAE)". G3-genes Genomes Genetics. 6(10):3343-3349 | PUBMED: #27543297 |
| 45 | 2016 | Reyes-Pérez, A., Vargas, M.C., Hernández, M., Aguirre-von-Wobeser, E., Pérez-Rueda, E. and Encarnación, S. (2016). "Transcriptomic Analysis of the Process of Biofilm Formation in Rhizobium etli CFN42". Arch Microbiol. 198(9):847-860 | PUBMED: #27226009 |
| 46 | 2016 | Sahonero-Canavesi, D.X., Zavaleta-Pastor, M., Martínez-Aguilar, L., López-Lara, I.M. and Geiger, O. (2016). "Defining Substrate Specificities for Lipase and Phospholipase Candidates". Journal of Visualized Experiments. (117) | PUBMED: #27911408 |
| 47 | 2016 | Tejerizo, G.T., Rogel, M.A., Ormeño-Orrillo, E., Althabegoiti, M.J., Nilsson, J.F., Niehaus, K., Schluter, A., Puhler, A., Del Papa, M.F., Lagares, A., Martínez-Romero, E. and Pistorio, M. (2016). "Rhizobium Favelukesii sp nov., Isolated From The Root Nodules Of Alfalfa (Medicago sativa L)". Int J Syst Evol Microbiol. 66:4451-4457 | PUBMED: #27499008 |
| 48 | 2016 | Utrilla, J., Vargas-Tah, A., Trujillo-Martínez, B., Gosset, G. and Martínez, A. (2016). "Production Of D-lactate from Sugarcane Bagasse and Corn Stover Hydrolysates Using Metabolic Engineered Escherichia coli Strains". Bioresource Technology. 220:208-214 | PUBMED: #27573474 |
| 49 | 2016 | Wang, Q.H., Abdul, S.S., Almeida, L., Ananiadou, S., Balderas-Martinez, Y.I., Batista-Navarro, R., Campos, D., Chilton, L., Chou, H.J., Contreras, G., Cooper, L., Dai, H.J., Ferrell, B., Fluck, J., Gama-Castro, S., George, N., Gkoutos, G., Irin, A.K., Jensen, L.J., Jiménez, S., Jue, T.R., Keseler, I., Madan, S., Matos, S., McQuilton, P., Milacic, M., Mort, M., Natarajan, J., Pafilis, E., Pereira, E., Rao, S., Rinaldi, F., Rothfels, K., Salgado, D., Silva, R.M., Singh, O., Stefancsik, R., Su, C.H., Subramani, S., Tadepally, H.D., Tsaprouni, L., Vasilevsky, N., Wang, X.D., Chatr-Aryamontri, A., Laulederkind, S.J.F., Matis-Mitchell, S., McEntyre, J., Orchard, S., Pundir, S., Rodríguez-Esteban, R., Van Auken, K., Lu, Z.Y., Schaeffer, M., Wu, C.H., Hirschman, L. and Arighi, C.N. (2016). "Overview Of the Interactive Task in BioCreative V". Database-the Journal of Biological Databases and Curation. | PUBMED: #27589961 |
