Recent Publications (12 months)


Publications

# Year Title Links
1 2017 Alatorre-Fernández, P., Mayoral-Terán, C., Velázquez-Acosta, C., Franco-Rodriguez, C., Flores-Moreno, K., Cevallos, M.A., López-Vidal, Y. and Volkow-Fernandez, P. (2017). "A Polyclonal Outbreak Of Bloodstream Infections by Enterococcus faecium in Patients with Hematologic Malignancies". American Journal of Infection Control. 45(3):260-266   PUBMED: #27852447
2 2017 Balderas-Martinez, Y.I., Rinaldi, F., Contreras, G., Solano-Lira, H., Sánchez-Pérez, M., Collado-Vides, J., Selman, M. and Pardo, A. (2017). "Improving Biocuration Of microRNAs in Diseases: a Case Study in Idiopathic Pulmonary Fibrosis". Database-the Journal of Biological Databases and Curation.   PUBMED: #28605770
3 2017 Bañuelos-Vazquez, L.A., Tejerizo, G.T. and Brom, S. (2017). "Regulation of Conjugative Transfer of Plasmids and Integrative Conjugative Elements". Plasmid. 91:82-89   PUBMED: #28438469
4 2017 Beardmore, R.E., Peña-Miller, R., Gori, F. and Iredell, J. (2017). "Antibiotic Cycling and Antibiotic Mixing: Which One Best Mitigates Antibiotic Resistance?". Mol Biol Evol. 34(4):802-817   PUBMED: #28096304
5 2017 Bustos, P., Santamaria, R.I., Pérez-Carrascal, O.M., Acosta, J.L., Lozano, L., Juárez, S., Martínez-Flores, I., Martínez-Romero, E., Romero, D., Dávila, G., Vinuesa, P., Miranda-Sánchez, F., Ormeño-Orrillo, E. and González, V. (2017). "Complete Genome Sequences Of Three Rhizobium gallicum Symbionts Associated With Common Bean (Phaseolus vulgaris)". Genome Announc. 5(11)   PUBMED: #28302777
6 2017 Contreras-Moreira, B., Cantalapiedra, C.P., García-Pereira, M.J., Gordon, S.P., Vogel, J.P., Igartua, E., Casas, A.M. and Vinuesa, P. (2017). "Analysis of Plant Pan-genomes and Transcriptomes with GET_HOMOLOGUES-est, a Clustering Solution for Sequences of the Same Species". Front Plant Sci. 8:184   PUBMED: #28261241
7 2017 Cruz-Córdova, A., Rodea, G.E., Porta, H., Navarro-Ocaña, A., Eslava-Campos, C., Cevallos, M.A. and Xicohtencatl-Cortes, J. (2017). "Genome Sequence Of Enterotoxigenic Escherichia coli Strain FMU073332". Genome Announc. 5(8):e01600-16   PUBMED: #28232434
8 2017 Cubillas, C., Miranda-Sánchez, F., González-Sánchez, A., Elizalde, J.P., Vinuesa, P., Brom, S. and (2017). "A Comprehensive Phylogenetic Analysis of Copper Transporting P-1b ATPases from Bacteria of the Rhizobiales Order Uncovers Multiplicity, Diversity and Novel Taxonomic Subtypes". Microbiologyopen. 6(4):-e452   PUBMED: #28217917
9 2017 de Lajudie, P. and Martínez-Romero, E. (2017). "International Committee on Systematics of Prokaryotes Subcommittee on the Taxonomy of Agrobacterium and Rhizobium Minutes of the Meeting". Int J Syst Evol Microbiol. 67(2):516-520    
10 2017 Esposti, M.D. and Martínez-Romero, E. (2017). "The Functional Microbiome of Arthropods". Plos One. 12(5)   PUBMED: #28475624
11 2017 Esposti, M.D. (2017). "The Long Story of Mitochondrial DNA and Respiratory Complex I". Frontiers in Bioscience-landmark. 22:722-731   PUBMED: #27814642
12 2017 Fang, H., Wu, Y.Y., Yang, H., Yoon, M., Jiménez-Barrón, L.T., Mittelman, D., Robison, R., Wang, K. and Lyon, G.J. (2017). "Whole Genome Sequencing of One Complex Pedigree Illustrates Challenges with Genomic Medicine". Bmc Medical Genomics. 10:10   PUBMED: #28228131
13 2017 Fernández-Retana, J., Zamudio-Meza, H., Rodríguez-Morales, M., Pedroza-Torres, A., Isla-Ortíz, D., Herrera, L., Jacobo-Herrera, N., Peralta-Zaragoza, O., López-Camarillo, C., Morales-González, F., de León, D.C. and Pérez-Plasencia, C. (2017). "Gene Signature Based on Degradome-related Genes Can Predict Distal Metastasis in Cervical Cancer Patients". Tumor Biology. 39(6)   PUBMED: #28639897
14 2017 Freyre-González, J.A. and Tauch, A. (2017). "Functional Architecture And Global Properties Of the Corynebacterium glutamicum Regulatory Network: Novel Insights from a Dataset with a High Genomic Coverage". Journal of Biotechnology. 257:199-210   PUBMED: #27829123
15 2017 Gamez-Reyes, A., Becerra-Lobato, N., Ramírez-Trujillo, J.A., Martínez-Romero, E., Dunn, M.F. and Hernández-Lucas, I (2017). "The Rhizobium Leucaenae Cfn 299 pSym Plasmid Contains Genes Expressed in Free Life and Symbiosis, as well as Two Replication Systems". Annals of Microbiology. 67(3):263-273    
16 2017 García-Gómez, E., Jaso-Vera, M.E., Juárez-Verdayes, M.A., Alcántar-Curiel, M.D., Betanzos-Cabrera, G., Peralta, H., Rodríguez-Martínez, S., Cancino-Díaz, M.E., Jan-Roblero, J. and Cancino-Díaz, J.C. (2017). "The 95 Delta G Mutation in the 5untranslated Region of the Nora Gene Increases Efflux Activity in Staphylococcus Epidermidis Isolates". Microbial Pathogenesis. 103:139-148   PUBMED: #28017900
17 2017 Gil Valdes, J., Ramírez-Torres, A. and Encarnación, S. (2017). "Lysine Acetylation and Cancer: a Proteomics Perspective". Journal of Proteomics. 150:297-309   PUBMED: #27746255
18 2017 Grana-Miraglia, L., Lozano, L., Velázquez, C., Volkow-Fernández, P., Pérez-Oseguera, A., Cevallos, M.A. and Castillo-Ramírez, S. (2017). "Rapid Gene Turnover as a Significant Source of Genetic Variation in a Recently Seeded Population of a Healthcare-associated Pathogen". Frontiers in Microbiology. 8:-1817   PUBMED: #28979253
19 2017 Hernández-Vargas, M.J., Gil Valdes, J., Lozano, L., Pedraza-Escalona, M., Ortíz, E., Encarnación, S., Alagon, A. and Corzo, G. (2017). "Proteomic And Transcriptomic Analysis Of Saliva Components from the Hematophagous Reduviid Triatoma Pallidipennis". Journal of Proteomics. 162:30-39   PUBMED: #28442446
20 2017 Iñiguez-Rabago, L.P., Ramirez, M., Barbazuk, W.B. and Hernández, G. (2017). "Identification and Analysis Of Alternative Splicing Events in Phaseolus vulgaris and Glycine max". BMC Genomics. 18:-650   PUBMED: #28830361
21 2017 Iñiguez-Rabago, L.P. and Hernández, G. (2017). "The Evolutionary Relationship between Alternative Splicing and Gene Duplication". Frontiers in Genetics. 8    
22 2017 Keseler, I.M., Mackie, A., Santos-Zavaleta, A., Billington, R., Bonavides-Martínez, C., Caspi, R., Fulcher, C., Gama-Castro, S., Kothari, A., Krummenacker, M., Latendresse, M., Muñíz-Rascado, L., Ong, Q., Paley, S., Peralta-Gil, M., Subhraveti, P., Velázquez-Ramírez, D.A., Weaver, D., Collado-Vides, J., Paulsen, I. and Karp, P.D. (2017). "The EcoCyc Database: Reflecting New Knowledge About Escherichia coli K-12". Nucl Acid Res. 45(D1):D543-D550   PUBMED: #27899573
23 2017 Ledezma-Tejeida, D., Ishida, C. and Collado-Vides, J. (2017). "Genome-wide Mapping Of Transcriptional Regulation and Metabolism Describes Information-processing Units in Escherichia coli". Frontiers in Microbiology. 8   PUBMED: #28824593
24 2017 Link, V., Aguilar-Gomez, D., Ramírez-Suastegui, C., Hurst, L.D. and Cortéz, D. (2017). "Male Mutation Bias is the Main Force Shaping Chromosomal Substitution Rates in Monotreme Mammals". Genome Biol. Evol.. 9(9):2198-2210   PUBMED: #28922870
25 2017 Martinez-Flores, W.A., Palma-Garcia, J.M., Caballero-Ortega, H., Del Viento-Camacho, A., López-Escamilla, E., Martínez-Hernández, F., Vinuesa, P., Correa, D. and Maravilla, P. (2017). "Genotyping Toxoplasma Gondii with the B1 Gene in Naturally Infected Sheep from an Endemic Region in the Pacific Coast of Mexico". Vector-borne and Zoonotic Diseases. 17(7):495-502   PUBMED: #28530509
26 2017 Méndez-Cruz, C.F., Gama-Castro, S., Mejia-Almonte, C., Castillo-Villalba, M.P., Muñíz-Rascado, L. and Collado-Vides, J. (2017). "First Steps In Automatic Summarization of Transcription Factor Properties for RegulonDB: Classification of Sentences about Structural Domains and Regulated Processes". Database-the Journal of Biological Databases and Curation.    
27 2017 Meneses, N., Taboada, H., Dunn, M.F., Vargas, M.C., Buchs, N., Heller, M. and Encarnación, S. (2017). "The Naringenin-induced Exoproteome of Rhizobium etli CE3". Arch Microbiol. 1-19   PUBMED: #28255691
28 2017 Montes-Grajales, D., Fennix-Agudelo, M. and Miranda-Castro, W. (2017). "Occurrence of Personal Care Products as Emerging Chemicals of Concern in Water Resources: a Review". Science of the Total Environment. 595:601-614   PUBMED: #28399499
29 2017 Ochoa-Sanchez, L.E. and Vinuesa, P. (2017). "Evolutionary Genetic Analysis Uncovers Multiple Species With Distinct Habitat Preferences and Antibiotic Resistance Phenotypes in the Stenotrophomonas maltophilia Complex". Frontiers in Microbiology. 8:-1548   PUBMED: #28861062
30 2017 Osorio, A., Camarena, L., Cevallos, M.A. and Poggio, S. (2017). "A New Essential Cell Division Protein in Caulobacter Crescentus". J Bacteriol. 199(8)   PUBMED: #28167520
31 2017 Pannier, L., Merino, E., Marchal. K. and Collado-Vides, J. (2017). "Effect of Genomic Distance on Coexpression of Coregulated Genes in e. coli". Plos One. 12(4)   PUBMED: #28419102
32 2017 Pérez-Morales, D., Banda, M.M., Chau, N.Y.E., Salgado, H., Martínez-Flores, I., Ibarra, J.A., Ilyas, B., Coombes, B.K. and Bustamante, V.H. (2017). "The Transcriptional Regulator Ssrb is Involved in a Molecular Switch Controlling Virulence Lifestyles of Salmonella". Plos Pathogens. 13(7):-e1006497   PUBMED: #28704543
33 2017 Rinaldi, F., Lithgow, O., Gama-Castro, S., Solano-Lira, H., López-Fuentes, A., Muñíz-Rascado, L., Ishida, C., Méndez-Cruz, C.F. and Collado-Vides, J. (2017). "Strategies towards Digital And Semi-automated Curation In RegulonDB". Database-the Journal of Biological Databases and Curation.   PUBMED: #28365731
34 2017 Santillán, O., Ramírez-Romero, M.Á. and Dávila, G. (2017). "CAPRRESI: Chimera Assembly By Plasmid Recovery and Restriction Enzyme Site Insertion". Jove-journal of Visualized Experiments. (124)-e55526   PUBMED: #28671650
35 2017 Saucedo-Mora, M.A., Castaneda-Tamez, P., Cazares, A., Pérez-Velázquez, J., Hense, B.A., Cazares, D., Figueroa, W., Carballo, M., Guarneros, G., Pérez-Eretza, B., Cruz, N., Nishiyama, Y., Maeda, T., Belmont-Díaz, J.A., Wood, T.K. and García-Contreras, R. (2017). "Selection Of Functional Quorum Sensing Systems by Lysogenic Bacteriophages in Pseudomonas Aeruginosa". Frontiers in Microbiology. 8:-1669   PUBMED: #28912771
36 2017 Sigala, J.C., Suárez, B.P., Lara, A.R., Le Borgne, S., Bustos, P., Santamaria, R.I., González, V. and Martínez, A. (2017). "Genomic and Physiological Characterization Of a Laboratory-isolated Acinetobacter Schindleri ACE Strain that Quickly and Efficiently Catabolizes Acetate". Microbiology-sgm. 163(7):1052-1064   PUBMED: #28671531
37 2017 Torres-Tejerizo, G., Wibberg, D., Winkler, A., Ormeño-Orrillo, E., Martínez-Romero, E., Niehaus, K., Puhler, A., Kalinowski, J., Lagares, A., Schlüter, A. and Pistorio, M. (2017). "Genome Sequence Of The Symbiotic Type Strain Rhizobium tibeticum CCBAU85039T". Genome Announc. 5(4):e01513-e01516   PUBMED: #28126941
38 2017 Vences-Guzmán, M.Á., Goetting-Minesky, M.P., Guan, Z.Q., Castillo-Ramírez, S., Cordoba-Castro, L.A., López-Lara, I.M., Geiger, O., Sohlenkamp, C. and Fenno, J.C. (2017). "1,2-Diacylglycerol Choline Phosphotransferase Catalyzes the Final Step In the Unique Treponema denticola Phosphatidylcholine Biosynthesis Pathway". Mol Microbiol. 103(5):896-912   PUBMED: #28009086
39 2017 Vera-Ponce de León, A., Ormeno-Orrillo, E., Ramírez-Puebla, T., Rosenblueth, M., Esposti, M.D., Martínez, J. and Martínez-Romero, E. (2017). "Candidatus Dactylopiibacterium Carminicum, A Nitrogen-fixing Symbiont Of Dactylopius Cochineal Insects (Hemiptera: COCCOIDEA: DACTYLOPIIDAE)". Genome Biol. Evol.. 9(9):2237-2250    
40 2017 Vicens, A., Andrade-López, K., Cortéz, D., Gutiérrez, R.M. and Treviño, L.G. (2017). "Premammalian Origin Of the Sperm-Specific Slo3 Channel". FEBS Open BIO. 3:382-390   PUBMED: #28286733
41 2017 Wu, Z.Q., Sloan, D.B., Brown, C.W., Rosenblueth, M., Palmer, J.D. and Ong, H.C. (2017). "Mitochondrial Retroprocessing Promoted Functional Transfers of rpl5 to the Nucleus in Grasses". Mol Biol Evol. 34(9):2340-2354   PUBMED: #28541477
42 2016 Jiménez-Cortes, J.G., Canales-Lazcano, J., Lara-Reyes, N., Rosenblueth, M., Martínez-Romero, E. and Contreras-Garduno, J. (2016). "Microbiota From Rhabditis Regina may Alter Nematode Entomopathogenicity". Parasitology Research. 115(11):4153-4165   PUBMED: #27492201
43 2016 Martínez-Flores, I., Pérez-Morales, D., Sánchez-Pérez, M., Paredes, C.C., Collado-Vides, J., Salgado, H. and Bustamante, V.H. (2016). "In Silico Clustering Of Salmonella Global Gene Expression Data Reveals Novel Genes Co-regulated With the SPI-1 Virulence Genes through Hild". Sci Rep. 6   PUBMED: #27886269
44 2016 Méndez-Cruz, C.F., Medina-Urrea, A. and Sierra, G. (2016). "Unsupervised Morphological Segmentation Based on Affixality Measurements". Pattern Recognitian Letters. 84:127-133   PUBMED: #26698293
45 2016 Ramirez, M., Iñiguez-Rabago, L.P., Guerrero, G., Sparvoli, F. and Hernández, G. (2016). "Rhizobium etli Bacteroids Engineered For Vitreoscilla Hemoglobin Expression Alleviate Oxidative Stress In Common Bean Nodules that Reprogramme Global Gene Expression". Plant Biotechnology Reports. 10(6):463-474    
46 2016 Reyes-Pérez, A., Vargas, M.C., Hernández, M., Aguirre-von-Wobeser, E., Pérez-Rueda, E. and Encarnación, S. (2016). "Transcriptomic Analysis of the Process of Biofilm Formation in Rhizobium etli CFN42". Arch Microbiol. 198(9):847-860   PUBMED: #27226009
47 2016 Sahonero-Canavesi, D.X., Zavaleta-Pastor, M., Martínez-Aguilar, L., López-Lara, I.M. and Geiger, O. (2016). "Defining Substrate Specificities for Lipase and Phospholipase Candidates". Journal of Visualized Experiments. (117)   PUBMED: #27911408
48 2016 Tejerizo, G.T., Rogel, M.A., Ormeño-Orrillo, E., Althabegoiti, M.J., Nilsson, J.F., Niehaus, K., Schluter, A., Puhler, A., Del Papa, M.F., Lagares, A., Martínez-Romero, E. and Pistorio, M. (2016). "Rhizobium Favelukesii sp nov., Isolated From The Root Nodules Of Alfalfa (Medicago sativa L)". Int J Syst Evol Microbiol. 66:4451-4457   PUBMED: #27499008
49 2016 Utrilla, J., Vargas-Tah, A., Trujillo-Martínez, B., Gosset, G. and Martínez, A. (2016). "Production Of D-lactate from Sugarcane Bagasse and Corn Stover Hydrolysates Using Metabolic Engineered Escherichia coli Strains". Bioresource Technology. 220:208-214   PUBMED: #27573474