Recent Publications (12 months)


# Year Title Links
1 2018 Blanc, C., Coluccia, F., LHaridon, F., Torres, M., Ortíz-Berrocal, M., Stahl, E., Reymond, P., Schreiber, L., Nawrath, C., Metraux, J.P. and Serrano, M. (2018). "The Cuticle Mutant eca2 Modifies Plant Defense Responses to Biotrophic and Necrotrophic Pathogens and Herbivory Insects". Mol Plant Microbe Interactions. 31(3):344-355   PUBMED: #29130376
2 2018 Chen, L.X., Méndez-García, C., Dombrowski, N., Servín-Garcidueñas, L.E., Eloe-Fadrosh, E.A., Fang, B.Z., Luo, Z.H., Tan, S., Zhi, X.Y., Hua, Z.S., Martínez-Romero, E., Woyke, T., Huang, L.N., Sánchez, J., Peláez, A., Ferrer, M., Baker, B.J. and Shu, W.S. (2018). "Metabolic Versatility of Small Archaea Micrarchaeota and Parvarchaeota". Isme Journal. 12(3):756-775   PUBMED: #29222443
3 2018 Chiozzotto, R., Ramirez, M., Talbi, C., Cominelli, E., Girard, L., Sparvoli, F. and Hernández, G. (2018). "Characterization Of the Symbiotic Nitrogen-fixing Common Bean low phytic acid (lpa1) Mutant Response to Water Stress". Genes. 9(2)    
4 2018 Conde-Alvárez, R., Palacios-Cháves, L., Gil-Ramírez, Y., Salvador-Bescos, M., Barcena-Varela, M., Aragón-Aranda, B., Martínez-Gómez, E., Zuniga-Ripa, A., de Miguel, M.J., Bartholomew, T.L., Hanniffy, S., Grillo, M.J., Vences-Guzmán, M.Á., Bengoechea, J.A., Arce-Gorvel, V., Gorvel, J.P., Moriyon, I. and Iriarte, M. (2018). "Identification of lptA, lpxE, and lpxO, Three Genes Involved in the Remodeling of Brucella Cell Envelope". Frontiers in Microbiology. 8:-2657    
5 2018 Kumar, K.M., Díaz, M.C., Hernández-Como, N., Hernández-Eligio, A., Torres-Torres, G., Godavarthi, S. and Gómez, L.M. (2018). "Green Synthesis of CE3+ Rich Ceo2 Nanoparticles and Its Antimicrobial Studies". Materials Letters. 214:15-19    
6 2018 Martínez-Romero, E., Rodríguez-Medina, N., Beltrán-Rojel, M., Toribio-Jimenez, J. and Garza-Ramos, U. (2018). "Klebsiella Variicola and Klebsiella Quasipneumoniae With Capacity to Adapt to Clinical and Plant Settings". Salud Publica Mexico. 60(1):29-40    
7 2018 Martínez-Romero, E., Rodríguez-Medina, N., Beltrán-Rojel, M., Silva-Sánchez, J., Barrios-Camacho, H., Pérez-Rueda, E. and Garza-Ramos, U. (2018). "Genome Misclassification Of Klebsiella Variicola and Klebsiella Quasipneumoniae Isolated from Plants, Animals and Humans". Salud Publica Mexico. 60(1):56-62    
8 2018 Mendoza-Hoffmann, F., Pérez-Oseguera, A., Cevallos, M.A., Zarco-Zavala, M., Ortega, R., Peña-Segura, C., Espinoza-Simon, E., Uribe-Carvajal, S. and García-Trejo, J.J. (2018). "The Biological Role of the Zeta Subunit as Unidirectional Inhibitor of the F1FO-ATPase of Paracoccus denitrificans". Cell Reports. 22(4):1067-1078   PUBMED: #29386127
9 2018 Seulveda-Cisterna, I., Lozano, L., Flores, A.F., de Ovando, I.V.S. and García-Angulo, V.A. (2018). "Transcriptomics Reveals A Cross-modulatory Effect between Riboflavin and Iron and Outlines Responses to Riboflavin Biosynthesis and Uptake in Vibrio Cholerae". Sci Rep. 8:-3149   PUBMED: #29453341
10 2018 Solís-González, C.J., Domínguez-Malfavon, L., Vargas-Suárez, M., Gaytan, I., Cevallos, M.A., Lozano, L., Cruz-Gómez, MJ and Loza-Tavera, H. (2018). "Novel Metabolic Pathway For N-methylpyrrolidone Degradation in Alicycliphilus sp Strain BQ1". Appl Environ Microbiol. 84(1)   PUBMED: #29030443
11 2018 Toledo-Leyva, A., Villegas-Pineda, J.C., Encarnación, S., Gallardo-Rincón, D. and Talamas-Rohana, P. (2018). "Effect of Ovarian Cancer Ascites on SKOV-3 Cells Proteome: New Proteins Associated with Aggressive Phenotype in Epithelial Ovarian Cancer". Proteome Sci. 16   PUBMED: #29456457
12 2017 Aragón, W., Reina-Pinto, J.J. and Serrano, M. (2017). "The Intimate Talk between Plants and Microorganisms at the Leaf Surface". J Exp Bot. 68(19):5339-5350   PUBMED: #29136456
13 2017 Balderas-Martinez, Y.I., Rinaldi, F., Contreras, G., Solano-Lira, H., Sánchez-Pérez, M., Collado-Vides, J., Selman, M. and Pardo, A. (2017). "Improving Biocuration Of microRNAs in Diseases: a Case Study in Idiopathic Pulmonary Fibrosis". Database-the Journal of Biological Databases and Curation.   PUBMED: #28605770
14 2017 Bañuelos-Vazquez, L.A., Tejerizo, G.T. and Brom, S. (2017). "Regulation of Conjugative Transfer of Plasmids and Integrative Conjugative Elements". Plasmid. 91:82-89   PUBMED: #28438469
15 2017 Beardmore, R.E., Peña-Miller, R., Gori, F. and Iredell, J. (2017). "Antibiotic Cycling and Antibiotic Mixing: Which One Best Mitigates Antibiotic Resistance?". Mol Biol Evol. 34(4):802-817   PUBMED: #28096304
16 2017 Cruz-Dávalos, D.I., Llamas, B., Gaunitz, C., Fages, A., Gamba, C., Soubrier, J., Librado, P., Seguín-Orlando, A., Pruvost, M., Alfarhan, A.H., Alquraishi, S.A., Al-Rasheid, K.A.S., Scheu, A., Beneke, N., Ludwig, A., Cooper, A., Willerslev, E. and Orlando, L. (2017). "Experimental Conditions Improving in-solution Target Enrichment for Ancient DNA". Molecular Ecology Resources. 17(3):508-522   PUBMED: #27566552
17 2017 Cubillas, C., Miranda-Sánchez, F., González-Sánchez, A., Elizalde, J.P., Vinuesa, P., Brom, S. and (2017). "A Comprehensive Phylogenetic Analysis of Copper Transporting P-1b ATPases from Bacteria of the Rhizobiales Order Uncovers Multiplicity, Diversity and Novel Taxonomic Subtypes". Microbiologyopen. 6(4):-e452   PUBMED: #28217917
18 2017 Esposti, M.D. (2017). "A Journey across Genomes Uncovers the Origin of Ubiquinone in Cyanobacteria". Genome Biol. Evol.. 9(11):3039-3053   PUBMED: #29106540
19 2017 Esposti, M.D. and Martínez-Romero, E. (2017). "The Functional Microbiome of Arthropods". Plos One. 12(5)   PUBMED: #28475624
20 2017 Fernández-Retana, J., Zamudio-Meza, H., Rodríguez-Morales, M., Pedroza-Torres, A., Isla-Ortíz, D., Herrera, L., Jacobo-Herrera, N., Peralta-Zaragoza, O., López-Camarillo, C., Morales-González, F., de León, D.C. and Pérez-Plasencia, C. (2017). "Gene Signature Based on Degradome-related Genes Can Predict Distal Metastasis in Cervical Cancer Patients". Tumor Biology. 39(6)   PUBMED: #28639897
21 2017 Freyre-González, J.A. and Tauch, A. (2017). "Functional Architecture And Global Properties Of the Corynebacterium glutamicum Regulatory Network: Novel Insights from a Dataset with a High Genomic Coverage". Journal of Biotechnology. 257:199-210   PUBMED: #27829123
22 2017 Gil Valdes, J., Ramírez-Torres, A., Chiappe, D., Luna-Peñaloza, J., Fernández-Reyes, F.C., Arcos-Encarnación, B., Contreras-Martínez, S. and Encarnación, S. (2017). "Lysine Acetylation Stoichiometry and Proteomics Analyses Reveal Pathways Regulated by Sirtuin 1 in Human Cells". J Biol Chem. 292(44):18129-18144   PUBMED: #28893905
23 2017 González-Sánchez, A., Cubillas, C., Miranda, F., Dávalos, A. and García-de los Santos, A. (2017). "The ropAe Gene Encode a Porin-like Protein Involved in Copper Transit in Rhizobium etli CFN42". Microbiologyopen.   PUBMED: #29280343
24 2017 Grana-Miraglia, L., Lozano, L., Velázquez, C., Volkow-Fernández, P., Pérez-Oseguera, A., Cevallos, M.A. and Castillo-Ramírez, S. (2017). "Rapid Gene Turnover as a Significant Source of Genetic Variation in a Recently Seeded Population of a Healthcare-associated Pathogen". Frontiers in Microbiology. 8:-1817   PUBMED: #28979253
25 2017 Hernández-Vargas, M.J., Gil Valdes, J., Lozano, L., Pedraza-Escalona, M., Ortíz, E., Encarnación, S., Alagon, A. and Corzo, G. (2017). "Proteomic And Transcriptomic Analysis Of Saliva Components from the Hematophagous Reduviid Triatoma Pallidipennis". Journal of Proteomics. 162:30-39   PUBMED: #28442446
26 2017 Iñiguez-Rabago, L.P., Ramirez, M., Barbazuk, W.B. and Hernández, G. (2017). "Identification and Analysis Of Alternative Splicing Events in Phaseolus vulgaris and Glycine max". BMC Genomics. 18:-650   PUBMED: #28830361
27 2017 Ledezma-Tejeida, D., Ishida, C. and Collado-Vides, J. (2017). "Genome-wide Mapping Of Transcriptional Regulation and Metabolism Describes Information-processing Units in Escherichia coli". Frontiers in Microbiology. 8   PUBMED: #28824593
28 2017 Link, V., Aguilar-Gomez, D., Ramírez-Suastegui, C., Hurst, L.D. and Cortéz, D. (2017). "Male Mutation Bias is the Main Force Shaping Chromosomal Substitution Rates in Monotreme Mammals". Genome Biol. Evol.. 9(9):2198-2210   PUBMED: #28922870
29 2017 López-Lara, I.M. and Geiger, O. (2017). "Bacterial Lipid Diversity". Bba-mol Cell Biol L. 1862(11):1287-1299   PUBMED: #27760387
30 2017 Marin, R., Cortéz, D., Lamanna, F., Pradeepa, M.M., Leushkin, E., Julien, P., Liechti, A., Halbert, J., Bruning, T., Mossinger, K., Trefzer, T., Conrad, C., Kerver, H.N., Wade, J., Tschopp, P. and Kaessmann, H. (2017). "Convergent Origination Of a Drosophila-like Dosage Compensation Mechanism in a Reptile Lineage". Genome Res. 27(12):1974-1987   PUBMED: #29133310
31 2017 Martinez-Flores, W.A., Palma-Garcia, J.M., Caballero-Ortega, H., Del Viento-Camacho, A., López-Escamilla, E., Martínez-Hernández, F., Vinuesa, P., Correa, D. and Maravilla, P. (2017). "Genotyping Toxoplasma Gondii with the B1 Gene in Naturally Infected Sheep from an Endemic Region in the Pacific Coast of Mexico". Vector-borne and Zoonotic Diseases. 17(7):495-502   PUBMED: #28530509
32 2017 Masforrol, Y., Gil Valdes, J., García, D., Noda, J., Ramos, Y., Betancourt, L., Guirola, O., González, S., Acevedo, B., Besada, V., Reyes, O. and González, L.J. (2017). "A Deeper Mining On the Protein Composition of VA-MENGOC-BC (r): an OMV-based Vaccine against N-meningitidis Serogroup B and C". Human Vaccines Anda Imminotheraéutics. 13(11):2548-2560   PUBMED: #29083947
33 2017 Méndez-Cruz, C.F., Gama-Castro, S., Mejia-Almonte, C., Castillo-Villalba, M.P., Muñíz-Rascado, L. and Collado-Vides, J. (2017). "First Steps In Automatic Summarization of Transcription Factor Properties for RegulonDB: Classification of Sentences about Structural Domains and Regulated Processes". Database-the Journal of Biological Databases and Curation.   PUBMED: #29220462
34 2017 Ochoa-Sanchez, L.E. and Vinuesa, P. (2017). "Evolutionary Genetic Analysis Uncovers Multiple Species With Distinct Habitat Preferences and Antibiotic Resistance Phenotypes in the Stenotrophomonas maltophilia Complex". Frontiers in Microbiology. 8:-1548   PUBMED: #28861062
35 2017 Ortíz-Berrocal, M., Lozano, L., Sánchez-Flores, A., Nava, N., Hernández, G. and Reddy, P.M. (2017). "Expression In Rice of an Autoactive Variant of Medicago truncatula Dmi3, the Ca+2/calmodulin-dependent Protein Kinase from the Common Symbiotic Pathway Modifies Root Transcriptome and Improves Mycorrhizal Colonization". Plant Biotechnology Reports. 11(5):271-287    
36 2017 Osorio, A., Camarena, L., Cevallos, M.A. and Poggio, S. (2017). "A New Essential Cell Division Protein in Caulobacter Crescentus". J Bacteriol. 199(8)   PUBMED: #28167520
37 2017 Pannier, L., Merino, E., Marchal. K. and Collado-Vides, J. (2017). "Effect of Genomic Distance on Coexpression of Coregulated Genes in e. coli". Plos One. 12(4)   PUBMED: #28419102
38 2017 Patiño-López, G. and Encarnación, S. (2017). "Clinical Proteomics in Mexico: where do We Stand?". Boletín Médico del Hospital Infantil de México. 74(3):173-174   PUBMED: #29382483
39 2017 Pérez-Morales, D., Banda, M.M., Chau, N.Y.E., Salgado, H., Martínez-Flores, I., Ibarra, J.A., Ilyas, B., Coombes, B.K. and Bustamante, V.H. (2017). "The Transcriptional Regulator Ssrb is Involved in a Molecular Switch Controlling Virulence Lifestyles of Salmonella". Plos Pathogens. 13(7):-e1006497   PUBMED: #28704543
40 2017 Pérez-Oseguera, A., Castro-Jaimes, S., Salgado-Camargo, A.D., Silva-Sánchez, J., Garza-González, E., Castillo-Ramírez, S. and Cevallos, M.A. (2017). "Complete Genome Sequence Of a blaOXA-58-producing Acinetobacter Baumannii Strain Isolated from a Mexican Hospital". Genome Announc. 5(36)   PUBMED: #28883144
41 2017 Romero-Gutiérrez, T., Peguero-Sánchez, E., Cevallos, M.A., Batista, C.V.F., Ortíz, E. and Possani, L.D. (2017). "A Deeper Examination of Thorellius Atrox Scorpion Venom Components with Omic Techonologies". Toxins. 9(12):-399   PUBMED: #29231872
42 2017 Ruíz-Valdiviezo, V.M., Rogel, M.A., Guerrero, G., Rincón-Molina, C.I., García-Pérez, L.G., Villalobos-Maldonado, J.J., López-López, A., Martínez-Romero, E. and Rincón-Rosales, R. (2017). "Complete Genome Sequence Of A Novel Nonnodulating Rhizobium Species Isolated from Agave Americana L. Rhizosphere". Genome Announc. 5(46)   PUBMED: #29146860
43 2017 Salleh, F.M., Ramos-Madriga, J., Peñaloza, F., Liu, S., Sinding, M.-H.S., Patel, R.P., Martins, R., Lenz, D., Roos, C., Shamsir, M.S., Azman, M.S., Lim, B.K., Rossiter, S.J., Wilting, A. and Gilbert, M.T.P. (2017). "An Expanded Mammal Mitogenome Dataset from Southeast Asia". Gigascience. 6(8):1-8   PUBMED: #28873965
44 2017 Sandoval-Calderón, M., Guan, Z.Q. and Sohlenkamp, C. (2017). "Knowns and Unknowns of Membrane Lipid Synthesis in Streptomycetes". Biochimie. 141:21-29   PUBMED: #28522365
45 2017 Santamaria, R.I., Bustos, P., Pérez-Carrascal O.M, Miranda-Sánchez, F., Vinuesa, P., Martínez-Flores, I., Juárez, S., Lozano, L., Martínez-Romero, E., Cevallos, M.A., Ormeño-Orrillo, E. and González, V. (2017). "Complete Genome Sequences Of Eight Rhizobium Symbionts Associated With Common Bean (Phaseolus vulgaris)". Genome Announc. 5(30)   PUBMED: #28751391
46 2017 Santillán, O., Ramírez-Romero, M.Á. and Dávila, G. (2017). "CAPRRESI: Chimera Assembly By Plasmid Recovery and Restriction Enzyme Site Insertion". Jove-journal of Visualized Experiments. (124)-e55526   PUBMED: #28671650
47 2017 Saucedo-Mora, M.A., Castaneda-Tamez, P., Cazares, A., Pérez-Velázquez, J., Hense, B.A., Cazares, D., Figueroa, W., Carballo, M., Guarneros, G., Pérez-Eretza, B., Cruz, N., Nishiyama, Y., Maeda, T., Belmont-Díaz, J.A., Wood, T.K. and García-Contreras, R. (2017). "Selection Of Functional Quorum Sensing Systems by Lysogenic Bacteriophages in Pseudomonas Aeruginosa". Frontiers in Microbiology. 8:-1669   PUBMED: #28912771
48 2017 Sigala, J.C., Suárez, B.P., Lara, A.R., Le Borgne, S., Bustos, P., Santamaria, R.I., González, V. and Martínez, A. (2017). "Genomic and Physiological Characterization Of a Laboratory-isolated Acinetobacter Schindleri ACE Strain that Quickly and Efficiently Catabolizes Acetate". Microbiology-sgm. 163(7):1052-1064   PUBMED: #28671531
49 2017 Silva, C., Betancor, L., García, C., Astocondor, L., Hinostroza, N., Bisio, J., Rivera, J., Perezgasga, L., Escanda, V.P., Yim, L., Jacobs, J., García-del Portillo, F., Chabalgoity, J.A. and Puente, J.L. (2017). "Characterization Of Salmonella enterica Isolates Causing Bacteremia in Lima, Peru, Using Multiple Typing Methods". Plos One. 12(12):-e0189946   PUBMED: #29267322
50 2017 Vargas, M.C., Mora, Y., Díaz-Mendez, R., Martínez-Batallar, Á.G., Girard, L., Encarnación, S., Peralta, H. and Mora, J. (2017). "Overproduction Of Sinorhizobium meliloti argC (N-acetyl-gamma-glutamyl Phosphate Reductase) Promotes Growth Delay and Inefficient Nodules". FEMS Microbiol Lett. 364(23):-fnx233   PUBMED: #29121239
51 2017 Vera-Ponce de León, A., Ormeno-Orrillo, E., Ramírez-Puebla, T., Rosenblueth, M., Esposti, M.D., Martínez, J. and Martínez-Romero, E. (2017). "Candidatus Dactylopiibacterium Carminicum, A Nitrogen-fixing Symbiont Of Dactylopius Cochineal Insects (Hemiptera: COCCOIDEA: DACTYLOPIIDAE)". Genome Biol. Evol.. 9(9):2237-2250    
52 2017 Wu, Z.Q., Sloan, D.B., Brown, C.W., Rosenblueth, M., Palmer, J.D. and Ong, H.C. (2017). "Mitochondrial Retroprocessing Promoted Functional Transfers of rpl5 to the Nucleus in Grasses". Mol Biol Evol. 34(9):2340-2354   PUBMED: #28541477