Alberto Santos Zavaleta

Genómica Computacional Técnico por honorarios

UNAM

Semblanza

Ligas

Scopus

Teléfono: (777) 3132063
Correo: asantos@ccg.unam.mx

Publicaciones

AñoPublicaciónPMID
2019Santos-Zavaleta, A, Salgado, H, Gama-Castro, S, Sánchez-Pérez, M., Gómez-Romero, L., Ledezma-Tejeida, D., García-Sotelo, J.S., Alquicira-Hernández, K, Muñíz-Rascado, L, Peña-Loredo, P., Ishida-Gutiérrez, C., Velázquez-Ramírez, D.A., Del Moral-Chávez, V, Bonavides-Martínez, C, Méndez-Cruz, CF, Galagan, J. and Collado-Vides, J. (2019). "RegulonDB v 10.5: tackling challenges to unify classic and high throughput knowledge of gene regulation in E. coli K-12". Nucleic Acids Research. 47(D1):212-220. [doi:10.1093/nar/gky1077]30395280
2018Santos-Zavaleta, A, Sanchez-Perez, Mishael, Salgado, H, Velazquez-Ramirez, David A., Gama-Castro, S, Tierrafria, Victor H., Busby, Stephen J. W., Aquino, Patricia, Fang, Xin, Palsson, Bernhard O., Galagan, James E. and Collado-Vides, J. (2018). "A unified resource for transcriptional regulation in Escherichia coli K-12 incorporating high-throughput-generated binding data into RegulonDB version 10.0". BMC BIOL. 16(1):91-91. [doi:10.1186/s12915-018-0555-y]30115066
2017Keseler IM, Mackie A, Santos-Zavaleta, A, Billington R, Bonavides-Martínez, C, Caspi R, Fulcher C, Gama-Castro, S, Kothari A, Krummenacker M, Latendresse M, Muñíz-Rascado, L, Ong Q, Paley S, Peralta-Gil M, Subhraveti P, Velázquez-Ramírez DA, Weaver D, Collado-Vides, J, Paulsen I and Karp PD. (2017). "The EcoCyc database: Reflecting new knowledge about Escherichia coli K-12". Nucleic Acids Research. 45(D1):543-550. [doi:10.1093/nar/gkw1003]27899573
2016Gama-Castro, S, Salgado, H, Santos-Zavaleta, A, Ledezma-Tejeida, D., Muñíz-Rascado, L, García-Sotelo, J.S., Alquicira-Hernández, K, Martínez-Flores, I, Pannier, L., Castro-Mondragón, J.A., Medina-Rivera, A., Solano-Lira, H., Bonavides-Martínez, C, Pérez-Rueda, E., Alquicira-Hernández, S, Porrón-Sotelo, L., López-Fuentes, A, Hernández-Koutoucheva, A., Del Moral-Chávez, V, Rinaldi, F. and Collado-Vides, J. (2016). "RegulonDB version 9.0: High-level integration of gene regulation, coexpression, motif clustering and beyond". Nucleic Acids Research. 44(D1):133-143. [doi:10.1093/nar/gkv1156]26527724
2014Gama-Castro, S, Rinaldi, F., López-Fuentes, A, Balderas MartÍnez, Yalbi Itzel, Clematide, S., Ellendorff, T.R., Santos-Zavaleta, A, Marques-Madeira, H. and Collado-Vides, J. (2014). "Assisted curation of regulatory interactions and growth conditions of OxyR in E. Colik-12". DATABASE-THE JOURNAL OF BIOLOGICAL DATABASES AND CURATION. 2014():bau049-. [doi:10.1093/database/bau049]24903516
2013Weiss, V., Medina-Rivera, A, Huerta, AM, Santos-Zavaleta, A, Salgado, H, Morett, E. and Collado-Vides, J. (2013). "Evidence classification of high-throughput protocols and confidence integration in RegulonDB". DATABASE-THE JOURNAL OF BIOLOGICAL DATABASES AND CURATION. 2013():bas059-. [doi:10.1093/database/bas059]23327937
2013Salgado, H, Peralta Gil, Martín, Gama-Castro, S, Santos-Zavaleta, A, Muñíz-Rascado, L, Garcia Sotelo, Jair Santiago, Weiss, V., Solano Lira, Hilda, Martínez-Flores, I, Medina Rivera, Alejandra Eugenia, Salgado Osorio, Gerardo, Alquicira-Hernández, S, Alquicira-Hernández, K, López-Fuentes, A, Porrón Sotelo, Liliana, Huerta Moreno, Araceli, Bonavides-Martínez, C, Balderas MartÍnez, Yalbi Itzel, Pannier, Lucia, Olvera, M., Labastida, A., Jiménez-Jacinto, V., Vega-Alvarado, L., Del Moral-Chávez, V, Hérnandez-Álvarez, A, Morett, E. and Collado-Vides, J. (2013). "RegulonDB v8.0: Omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more". Nucleic Acids Research. 41(D1):203-213. [doi:10.1093/nar/gks1201]23203884
2013Keseler, I.M., Mackie, A., Peralta Gil, Martín, Santos-Zavaleta, A, Gama-Castro, S, Bonavides-Martínez, C, Fulcher, C., Huerta Moreno, Araceli, Kothari, A., Krummenacker, M., Latendresse, M., Muñíz-Rascado, L, Ong, Q., Paley, S., Schroder, I., Shearer, A.G., Subhraveti, P., Travers, M., Weerasinghe, D., Weiss, V., Collado-Vides, J, Gunsalus, R.P., Paulsen, I. and Karp, P.D.. (2013). "EcoCyc: Fusing model organism databases with systems biology". Nucleic Acids Research. 41(D1):605-612. [doi:10.1093/nar/gks1027]23143106
2011Santos-Zavaleta, A, Gama-Castro, S and Pérez Rueda, Ernesto. (2011). "A comparative genome analysis of the RpoS sigmulon shows a high diversity of responses and origins". MICROBIOLOGY-SGM. 157(5):1393-1401. [doi:10.1099/mic.0.042937-0]21310789
2011Gama-Castro, S, Salgado, H, Peralta Gil, Martín, Santos-Zavaleta, A, Muñíz-Rascado, L, Solano Lira, Hilda, Jimenez-Jacinto, V., Weiss, V., Garcia Sotelo, Jair Santiago, López-Fuentes, A, Porrón Sotelo, Liliana, Alquicira-Hernández, S, Medina Rivera, Alejandra Eugenia, Martínez-Flores, I, Alquicira-Hernández, K, Martínez Adame, Ruth, Bonavides-Martínez, C, Miranda-Ríos, J., Huerta Moreno, Araceli, Mendoza-Vargas, A., Collado Torres, Leonardo, Taboada, B., Vega-Alvarado, L., Olvera, M., Olvera, L., Grande, R., Morett, E. and Collado-Vides, J. (2011). "RegulonDB version 7.0: Transcriptional regulation of Escherichia coli K-12 integrated within genetic sensory response units (Gensor Units)". Nucleic Acids Research. 39(SUPPL. 1):98-105. [doi:10.1093/nar/gkq1110]21051347
2011Keseler, I.M., Collado-Vides, J, Santos-Zavaleta, A, Peralta Gil, Martín, Gama-Castro, S, Muñíz-Rascado, L, Bonavides-Martínez, C, Paley, S., Krummenacker, M., Altman, T., Spaulding, A., Spaulding, A., Pacheco, J., Latendresse, M., Fulcher, C., Sarker, M., Shearer, A.G., Mackie, A., Paulsen, I., Gunsalus, R.P. and Karp, P.D.. (2011). "EcoCyc: A comprehensive database of Escherichia coli biology". Nucleic Acids Research. 39(SUPPL. 1):583-590. [doi:10.1093/nar/gkq1143]21097882
2009Keseler, Ingrid M., Bonavides-Martinez, Cesar, Collado-Vides, J, Gama-Castro, S, Gunsalus, Robert P., Johnson, D. Aaron, Krummenacker, Markus, Nolan, Laura M., Paley, Suzanne, Paulsen, Ian T., Peralta-Gil, Martin, Santos-Zavaleta, A, Glennon Shearer, Alexander and Karp, Peter D.. (2009). "EcoCyc: A comprehensive view of Escherichia coli biology". Nucleic Acids Research. 37(SUPPL. 1):464-470. [doi:10.1093/nar/gkn751]18974181
2009Collado-Vides, J, Salgado, H, Morett, Enrique, Gama-Castro, S, Jimenez-Jacinto, Veronica, Martínez-Flores, I, Medina-Rivera, Alejandra, Muñíz-Rascado, L, Peralta-Gil, Martin and Santos-Zavaleta, A. (2009). "Bioinformatics resources for the study of gene regulation in bacteria". Journal Of Bacteriology. 91(1):23-31. [doi:10.1128/JB.01017-08]18978060
2008Gama-Castro, S, Jiménez Jacinto, Verónica, Peralta Gil, Martín, Santos-Zavaleta, A, Peñaloza Spinola, Mónica Ivonne, Contreras Moreira, Bruno, Segura Salazar, Juan, Muñíz-Rascado, L, Martínez-Flores, I, Salgado, H, Bonavides-Martínez, C, Abreu Goodger, Cei Leander Gastón, Rodríguez Penagos, Carlos, Miranda-Ríos, J., Morett Sánchez, Juan Enrique, Merino, E., Huerta Moreno, Araceli, Treviño Quintanilla, Luis Gerardo and Collado-Vides, J. (2008). "RegulonDB (version 6.0): Gene regulation model of Escherichia coli K-12 beyond transcription, active (experimental) annotated promoters and Textpresso navigation". Nucleic Acids Research. 36(SUPPL. 1):120-124. [doi:10.1093/nar/gkm994]18158297
2007Karp, P.D., Keseler, I.M., Shearer, A., Latendresse, M., Krummenacker, M., Paley, S.M., Paulsen, I., Collado-Vides, J, Gama-Castro, S, Peralta Gil, Martín, Santos-Zavaleta, A, Peñaloza Spinola, Mónica Ivonne, Bonavides-Martínez, C and Ingraham, J.. (2007). "Multidimensional annotation of the Escherichia coli K-12 genome". Nucleic Acids Research. 35(22):7577-7590. [doi:10.1093/nar/gkm740]17940092
2006Peñaloza Spinola, Mónica Ivonne, Peralta Gil, Martín, Gama-Castro, S, Contreras Moreira, Bruno, Santos-Zavaleta, A, Martínez-Flores, I and Collado-Vides, J. (2006). "RegulonDB: Going beyond transcriptional regulation". Proceedings Of The Fifth International Conference On Bioinformatics Of Genome Regulation And Structure, Vol 3. ():322-322.
2006Salgado, H, Santos-Zavaleta, A, Gama-Castro, S, Peralta Gil, Martín, Peñaloza Spinola, Mónica Ivonne, Martínez Antonio, Agustino, Karp, P.D. and Collado-Vides, J. (2006). "The comprehensive updated regulatory network of Escherichia coli K-12". Bmc Bioinformatics. 7():5-5. [doi:10.1186/1471-2105-7-5]16398937
2006Salgado, H, Gama-Castro, S, Peralta Gil, Martín, Díaz Peredo, Edgar Ulises, Sánchez Solano, Erika Fabiola, Santos-Zavaleta, A, Martínez-Flores, I, Jiménez Jacinto, Verónica, Bonavides-Martínez, C, Segura Salazar, Juan, Martínez Antonio, Agustino and Collado-Vides, J. (2006). "RegulonDB (version 5.0): Escherichia coli K-12 transcriptional regulatory network, operon organization, and growth conditions.". Nucleic Acids Research. 34(Database issue):394-397. [doi:10.1093/nar/gkj156]16381895
2004Salgado, H, Gama-Castro, S, Martínez Antonio, Agustino, Díaz Peredo, Edgar Ulises, Sánchez Solano, Erika Fabiola, Peralta Gil, Martín, García-Alonso, D, Jiménez Jacinto, Verónica, Santos-Zavaleta, A, Bonavides-Martínez, C and Collado-Vides, J. (2004). "RegulonDB (version 4.0): Transcriptional regulation, operon organization and growth conditions in Escherichia coli K-12". Nucleic Acids Research. 32(DATABASE ISS.):303-306. [doi:10.1093/nar/gkh140]14681419
2001Hershberg, R., Bejerano, G., Santos-Zavaleta, A and Margalit, H.. (2001). "PromEC: An updated database of Escherichia coli mRNA promoters with experimentally identified transcriptional start sites". Nucleic Acids Research. 29(1):277-277. [doi:10.1093/nar/29.1.277]11125111
2001Salgado, H, Santos-Zavaleta, A, Gama-Castro, S, Millen-Zarate, D, Diaz-Peredo, E, Sanchez-Solano, F, Pérez-Rueda, E, Bonavides-Martínez, C and Collado-Vides, J. (2001). "RegulonDB (version 3.2): Transcriptional regulation and operon organization in Escherichia coli K-12". Nucleic Acids Research. 29(1):72-74. [doi:10.1093/nar/29.1.72]11125053
2000Salgado, H, Santos-Zavaleta, A, Gama-Castro, S, Millan-Zarate, D, Blattner, FR and Collado-Vides, J. (2000). "RegulonDB (version 3.0): Transcriptional regulation and operon organization in Escherichia coli K-12". Nucleic Acids Research. 28(1):65-67. [doi:10.1093/nar/28.1.65]10592182